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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 464 |
| AccII | CGCG | 1 cut(s) | 28 |
| AciI | CCGC | 3 cut(s) | 28, 415, 629 |
| AclWI | GGATC | 2 cut(s) | 281, 511 |
| AcsI | RAATTY | 2 cut(s) | 119, 696 |
| AcuI | CTGAAG | 1 cut(s) | 296 |
| AfaI | GTAC | 3 cut(s) | 152, 234, 308 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 27, 160, 301 |
| AflII | CTTAAG | 1 cut(s) | 347 |
| AflIII | ACRYGT | 2 cut(s) | 280, 456 |
| AgsI | TTSAA | 5 cut(s) | 119, 319, 448, 549, 664 |
| AjiI | CACGTC | 1 cut(s) | 476 |
| AluBI | AGCT | 2 cut(s) | 52, 616 |
| AluI | AGCT | 2 cut(s) | 52, 616 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| AlwI | GGATC | 2 cut(s) | 281, 511 |
| AoxI | GGCC | 2 cut(s) | 29, 677 |
| ApeKI | GCWGC | 3 cut(s) | 9, 49, 68 |
| ApoI | RAATTY | 2 cut(s) | 119, 696 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AspS9I | GGNCC | 1 cut(s) | 678 |
| AsuHPI | GGTGA | 2 cut(s) | 26, 259 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 134, 167 |
| BbsI | GAAGAC | 2 cut(s) | 326, 530 |
| BbvI | GCAGC | 3 cut(s) | 21, 55, 61 |
| BccI | CCATC | 1 cut(s) | 71 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 46, 80 |
| BciVI | GTATCC | 1 cut(s) | 334 |
| BclI | TGATCA | 1 cut(s) | 618 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfaI | CTAG | 2 cut(s) | 291, 560 |
| BfmI | CTRYAG | 1 cut(s) | 47 |
| BfrI | CTTAAG | 1 cut(s) | 347 |
| BfuI | GTATCC | 1 cut(s) | 334 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 4 cut(s) | 10, 29, 50, 69 |
| BlpI | GCTNAGC | 1 cut(s) | 53 |
| BlsI | GCNGC | 4 cut(s) | 11, 30, 51, 70 |
| BmgBI | CACGTC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 678 |
| BpiI | GAAGAC | 2 cut(s) | 326, 530 |
| BpmI | CTGGAG | 2 cut(s) | 4, 599 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 53 |
| BpuEI | CTTGAG | 1 cut(s) | 167 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaBI | GATNNNNATC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 1 cut(s) | 702 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 27, 160, 301 |
| Bse1I | ACTGG | 1 cut(s) | 568 |
| Bse8I | GATNNNNATC | 1 cut(s) | 89 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 702 |
| BseJI | GATNNNNATC | 1 cut(s) | 89 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 27, 160, 301 |
| BseMII | CTCAG | 3 cut(s) | 67, 150, 630 |
| BseNI | ACTGG | 1 cut(s) | 568 |
| BseXI | GCAGC | 3 cut(s) | 21, 55, 61 |
| BseYI | CCCAGC | 1 cut(s) | 300 |
| Bsh1236I | CGCG | 1 cut(s) | 28 |
| BshFI | GGCC | 2 cut(s) | 31, 679 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BslFI | GGGAC | 1 cut(s) | 366 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 27, 160, 301 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmBI | CGTCTC | 1 cut(s) | 482 |
| BsmFI | GGGAC | 1 cut(s) | 366 |
| BsnI | GGCC | 2 cut(s) | 31, 679 |
| Bsp143I | GATC | 4 cut(s) | 84, 286, 516, 618 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 53 |
| BspACI | CCGC | 3 cut(s) | 28, 415, 629 |
| BspANI | GGCC | 2 cut(s) | 31, 679 |
| BspCNI | CTCAG | 3 cut(s) | 66, 149, 631 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BspFNI | CGCG | 1 cut(s) | 28 |
| BspHI | TCATGA | 1 cut(s) | 370 |
| BspMAI | CTGCAG | 1 cut(s) | 51 |
| BspPI | GGATC | 2 cut(s) | 281, 511 |
| BspTI | CTTAAG | 1 cut(s) | 347 |
| BsrI | ACTGG | 1 cut(s) | 568 |
| BssECI | CCNNGG | 1 cut(s) | 702 |
| BssMI | GATC | 4 cut(s) | 84, 286, 516, 618 |
| Bst4CI | ACNGT | 3 cut(s) | 158, 336, 397 |
| BstAFI | CTTAAG | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 2 cut(s) | 26, 419 |
| BstDEI | CTNAG | 3 cut(s) | 53, 136, 639 |
| BstFNI | CGCG | 1 cut(s) | 28 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 4 cut(s) | 87, 289, 519, 621 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 4 cut(s) | 84, 286, 516, 618 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 74, 188 |
| BstNSI | RCATGY | 3 cut(s) | 258, 284, 460 |
| BstSFI | CTRYAG | 1 cut(s) | 47 |
| BstUI | CGCG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 3 cut(s) | 21, 55, 61 |
| BstV2I | GAAGAC | 2 cut(s) | 326, 530 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuI | GTATCC | 1 cut(s) | 334 |
| BsuRI | GGCC | 2 cut(s) | 31, 679 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| BtgZI | GCGATG | 1 cut(s) | 49 |
| BtrI | CACGTC | 1 cut(s) | 476 |
| BtsIMutI | CAGTG | 1 cut(s) | 407 |
| Cac8I | GCNNGC | 2 cut(s) | 26, 419 |
| CciI | TCATGA | 1 cut(s) | 370 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr13I | GGNCC | 1 cut(s) | 678 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| Csp6I | GTAC | 3 cut(s) | 151, 233, 307 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 469, 504 |
| CviAII | CATG | 4 cut(s) | 255, 281, 371, 457 |
| CviJI | RGCY | 9 cut(s) | 31, 52, 294, 563, 577, 616, 638, 679, 707 |
| CviKI_1 | RGCY | 9 cut(s) | 31, 52, 294, 563, 577, 616, 638, 679, 707 |
| CviQI | GTAC | 3 cut(s) | 151, 233, 307 |
| DdeI | CTNAG | 3 cut(s) | 53, 136, 639 |
| DpnI | GATC | 4 cut(s) | 86, 288, 518, 620 |
| DpnII | GATC | 4 cut(s) | 84, 286, 516, 618 |
| Eco32I | GATATC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 1 cut(s) | 296 |
| EcoRV | GATATC | 1 cut(s) | 91 |
| Esp3I | CGTCTC | 1 cut(s) | 482 |
| FaeI | CATG | 4 cut(s) | 258, 284, 374, 460 |
| FaqI | GGGAC | 1 cut(s) | 366 |
| FatI | CATG | 4 cut(s) | 254, 280, 370, 456 |
| FbaI | TGATCA | 1 cut(s) | 618 |
| Fnu4HI | GCNGC | 4 cut(s) | 10, 29, 50, 69 |
| Fsp4HI | GCNGC | 4 cut(s) | 10, 29, 50, 69 |
| FspBI | CTAG | 2 cut(s) | 291, 560 |
| FspI | TGCGCA | 1 cut(s) | 464 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 4 cut(s) | 10, 29, 50, 69 |
| GsaI | CCCAGC | 1 cut(s) | 304 |
| GsuI | CTGGAG | 2 cut(s) | 4, 599 |
| HaeIII | GGCC | 2 cut(s) | 31, 679 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1II | CATG | 4 cut(s) | 258, 284, 374, 460 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HinfI | GANTC | 3 cut(s) | 134, 526, 597 |
| HphI | GGTGA | 2 cut(s) | 26, 259 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 169, 703 |
| Hpy188III | TCNNGA | 4 cut(s) | 94, 371, 520, 661 |
| HpyAV | CCTTC | 1 cut(s) | 320 |
| HpyCH4III | ACNGT | 3 cut(s) | 158, 336, 397 |
| HpyCH4IV | ACGT | 2 cut(s) | 355, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 9, 49, 77 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 74, 188 |
| HpyF3I | CTNAG | 3 cut(s) | 53, 136, 639 |
| HpySE526I | ACGT | 2 cut(s) | 355, 475 |
| Hsp92II | CATG | 4 cut(s) | 258, 284, 374, 460 |
| HspAI | GCGC | 1 cut(s) | 463 |
| Ksp22I | TGATCA | 1 cut(s) | 618 |
| Kzo9I | GATC | 4 cut(s) | 84, 286, 516, 618 |
| LmnI | GCTCC | 1 cut(s) | 387 |
| LpnPI | CCDG | 7 cut(s) | 34, 95, 286, 533, 563, 581, 661 |
| Lsp1109I | GCAGC | 3 cut(s) | 21, 55, 61 |
| MaeI | CTAG | 2 cut(s) | 291, 560 |
| MaeII | ACGT | 2 cut(s) | 355, 475 |
| MalI | GATC | 4 cut(s) | 86, 288, 518, 620 |
| MboI | GATC | 4 cut(s) | 84, 286, 516, 618 |
| MboII | GAAGA | 3 cut(s) | 331, 518, 535 |
| MluCI | AATT | 5 cut(s) | 119, 481, 696, 709, 721 |
| MlyI | GAGTC | 2 cut(s) | 128, 520 |
| MmeI | TCCRAC | 1 cut(s) | 131 |
| MnlI | CCTC | 5 cut(s) | 28, 42, 267, 646, 697 |
| MseI | TTAA | 5 cut(s) | 240, 263, 348, 609, 724 |
| MspCI | CTTAAG | 1 cut(s) | 347 |
| MvnI | CGCG | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 74, 188 |
| NdeII | GATC | 4 cut(s) | 84, 286, 516, 618 |
| NlaIII | CATG | 4 cut(s) | 258, 284, 374, 460 |
| NsbI | TGCGCA | 1 cut(s) | 464 |
| NspI | RCATGY | 3 cut(s) | 258, 284, 460 |
| PagI | TCATGA | 1 cut(s) | 370 |
| PciI | ACATGT | 2 cut(s) | 280, 456 |
| PfeI | GAWTC | 1 cut(s) | 597 |
| PkrI | GCNGC | 4 cut(s) | 11, 30, 51, 70 |
| PleI | GAGTC | 2 cut(s) | 128, 520 |
| PpsI | GAGTC | 2 cut(s) | 128, 520 |
| PscI | ACATGT | 2 cut(s) | 280, 456 |
| PspFI | CCCAGC | 1 cut(s) | 300 |
| PspPI | GGNCC | 1 cut(s) | 678 |
| PstI | CTGCAG | 1 cut(s) | 51 |
| RsaI | GTAC | 3 cut(s) | 152, 234, 308 |
| RsaNI | GTAC | 3 cut(s) | 151, 233, 307 |
| SaqAI | TTAA | 5 cut(s) | 240, 263, 348, 609, 724 |
| SatI | GCNGC | 4 cut(s) | 10, 29, 50, 69 |
| Sau3AI | GATC | 4 cut(s) | 84, 286, 516, 618 |
| Sau96I | GGNCC | 1 cut(s) | 678 |
| SchI | GAGTC | 2 cut(s) | 128, 520 |
| SfcI | CTRYAG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 2 cut(s) | 146, 347 |
| SmoI | CTYRAG | 2 cut(s) | 146, 347 |
| Sse9I | AATT | 5 cut(s) | 119, 481, 696, 709, 721 |
| SsiI | CCGC | 3 cut(s) | 28, 415, 629 |
| SspI | AATATT | 1 cut(s) | 197 |
| SspMI | CTAG | 2 cut(s) | 291, 560 |
| TaaI | ACNGT | 3 cut(s) | 158, 336, 397 |
| TaiI | ACGT | 2 cut(s) | 358, 478 |
| TaqI | TCGA | 2 cut(s) | 87, 112 |
| TasI | AATT | 5 cut(s) | 119, 481, 696, 709, 721 |
| TauI | GCSGC | 1 cut(s) | 31 |
| TfiI | GAWTC | 1 cut(s) | 597 |
| Tru1I | TTAA | 5 cut(s) | 240, 263, 348, 609, 724 |
| Tru9I | TTAA | 5 cut(s) | 240, 263, 348, 609, 724 |
| TscAI | CASTG | 1 cut(s) | 407 |
| TseI | GCWGC | 3 cut(s) | 9, 49, 68 |
| TspDTI | ATGAA | 2 cut(s) | 359, 423 |
| TspGWI | ACGGA | 1 cut(s) | 509 |
| TspRI | CASTG | 1 cut(s) | 407 |
| Vha464I | CTTAAG | 1 cut(s) | 347 |
| XapI | RAATTY | 2 cut(s) | 119, 696 |
| XceI | RCATGY | 3 cut(s) | 258, 284, 460 |
| XspI | CTAG | 2 cut(s) | 291, 560 |