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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 574 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 127 |
| AciI | CCGC | 2 cut(s) | 151, 299 |
| AclWI | GGATC | 3 cut(s) | 17, 399, 497 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcuI | CTGAAG | 2 cut(s) | 32, 104 |
| AcvI | CACGTG | 2 cut(s) | 515, 533 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgsI | TTSAA | 4 cut(s) | 55, 184, 205, 400 |
| AjiI | CACGTC | 3 cut(s) | 212, 497, 545 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 117, 149 |
| Alw26I | GTCTC | 2 cut(s) | 218, 416 |
| AlwI | GGATC | 3 cut(s) | 17, 399, 497 |
| AoxI | GGCC | 1 cut(s) | 413 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| AspS9I | GGNCC | 1 cut(s) | 414 |
| AsuHPI | GGTGA | 1 cut(s) | 563 |
| AsuNHI | GCTAGC | 1 cut(s) | 295 |
| BanI | GGYRCC | 1 cut(s) | 574 |
| BbrPI | CACGTG | 2 cut(s) | 515, 533 |
| BbsI | GAAGAC | 1 cut(s) | 62 |
| BccI | CCATC | 1 cut(s) | 548 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BcoDI | GTCTC | 2 cut(s) | 218, 416 |
| BfaI | CTAG | 3 cut(s) | 27, 296, 411 |
| BmgBI | CACGTC | 3 cut(s) | 212, 497, 545 |
| BmgT120I | GGNCC | 1 cut(s) | 414 |
| BmiI | GGNNCC | 1 cut(s) | 576 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BmtI | GCTAGC | 1 cut(s) | 299 |
| BpiI | GAAGAC | 1 cut(s) | 62 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 1 cut(s) | 458 |
| BsaAI | YACGTR | 2 cut(s) | 515, 533 |
| BsaJI | CCNNGG | 1 cut(s) | 121 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| Bse1I | ACTGG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 1 cut(s) | 121 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| BseMII | CTCAG | 2 cut(s) | 366, 411 |
| BseNI | ACTGG | 1 cut(s) | 132 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 415 |
| BshNI | GGYRCC | 1 cut(s) | 574 |
| BslFI | GGGAC | 2 cut(s) | 102, 555 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| BsmAI | GTCTC | 2 cut(s) | 218, 416 |
| BsmBI | CGTCTC | 1 cut(s) | 218 |
| BsmFI | GGGAC | 2 cut(s) | 102, 555 |
| BsnI | GGCC | 1 cut(s) | 415 |
| Bsp143I | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| BspACI | CCGC | 2 cut(s) | 151, 299 |
| BspANI | GGCC | 1 cut(s) | 415 |
| BspCNI | CTCAG | 2 cut(s) | 367, 412 |
| BspLI | GGNNCC | 1 cut(s) | 576 |
| BspOI | GCTAGC | 1 cut(s) | 299 |
| BspPI | GGATC | 3 cut(s) | 17, 399, 497 |
| BspT107I | GGYRCC | 1 cut(s) | 574 |
| BsrI | ACTGG | 1 cut(s) | 132 |
| BssECI | CCNNGG | 1 cut(s) | 121 |
| BssMI | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| BssT1I | CCWWGG | 1 cut(s) | 121 |
| BstBAI | YACGTR | 2 cut(s) | 515, 533 |
| BstC8I | GCNNGC | 2 cut(s) | 155, 297 |
| BstDEI | CTNAG | 4 cut(s) | 8, 375, 420, 579 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstKTI | GATC | 5 cut(s) | 25, 255, 357, 394, 505 |
| BstMAI | GTCTC | 2 cut(s) | 218, 416 |
| BstMBI | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstV2I | GAAGAC | 1 cut(s) | 62 |
| BstX2I | RGATCY | 1 cut(s) | 391 |
| BstYI | RGATCY | 1 cut(s) | 391 |
| BsuRI | GGCC | 1 cut(s) | 415 |
| BtrI | CACGTC | 3 cut(s) | 212, 497, 545 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 2 cut(s) | 143, 417 |
| Cac8I | GCNNGC | 2 cut(s) | 155, 297 |
| Cfr13I | GGNCC | 1 cut(s) | 414 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 205, 240 |
| CviAII | CATG | 2 cut(s) | 193, 320 |
| CviJI | RGCY | 7 cut(s) | 30, 131, 313, 360, 374, 415, 443 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 131, 313, 360, 374, 415, 443 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DdeI | CTNAG | 4 cut(s) | 8, 375, 420, 579 |
| DpnI | GATC | 5 cut(s) | 24, 254, 356, 393, 504 |
| DpnII | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| Eco130I | CCWWGG | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 104 |
| Eco72I | CACGTG | 2 cut(s) | 515, 533 |
| EcoT14I | CCWWGG | 1 cut(s) | 121 |
| ErhI | CCWWGG | 1 cut(s) | 121 |
| Esp3I | CGTCTC | 1 cut(s) | 218 |
| FaeI | CATG | 2 cut(s) | 196, 323 |
| FaiI | YATR | 8 cut(s) | 18, 34, 165, 194, 251, 293, 321, 450 |
| FaqI | GGGAC | 2 cut(s) | 102, 555 |
| FatI | CATG | 2 cut(s) | 192, 319 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 3 cut(s) | 27, 296, 411 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeIII | GGCC | 1 cut(s) | 415 |
| Hin1II | CATG | 2 cut(s) | 196, 323 |
| HinfI | GANTC | 2 cut(s) | 147, 333 |
| HphI | GGTGA | 1 cut(s) | 563 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 397, 437 |
| HpyAV | CCTTC | 4 cut(s) | 56, 79, 199, 222 |
| HpyCH4IV | ACGT | 6 cut(s) | 91, 211, 496, 514, 532, 544 |
| HpyCH4V | TGCA | 4 cut(s) | 367, 482, 527, 568 |
| HpyF3I | CTNAG | 4 cut(s) | 8, 375, 420, 579 |
| HpySE526I | ACGT | 6 cut(s) | 91, 211, 496, 514, 532, 544 |
| Hsp92II | CATG | 2 cut(s) | 196, 323 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| LmnI | GCTCC | 2 cut(s) | 123, 316 |
| LpnPI | CCDG | 4 cut(s) | 22, 95, 113, 299 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeI | CTAG | 3 cut(s) | 27, 296, 411 |
| MaeII | ACGT | 6 cut(s) | 91, 211, 496, 514, 532, 544 |
| MalI | GATC | 5 cut(s) | 24, 254, 356, 393, 504 |
| MboI | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| MboII | GAAGA | 2 cut(s) | 67, 254 |
| MflI | RGATCY | 1 cut(s) | 391 |
| MluCI | AATT | 3 cut(s) | 68, 217, 432 |
| MnlI | CCTC | 5 cut(s) | 3, 372, 382, 433, 542 |
| MseI | TTAA | 2 cut(s) | 345, 589 |
| NdeII | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| NheI | GCTAGC | 1 cut(s) | 295 |
| NlaIII | CATG | 2 cut(s) | 196, 323 |
| NlaIV | GGNNCC | 1 cut(s) | 576 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PfeI | GAWTC | 2 cut(s) | 147, 333 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 127 |
| PmaCI | CACGTG | 2 cut(s) | 515, 533 |
| PmlI | CACGTG | 2 cut(s) | 515, 533 |
| Ppu21I | YACGTR | 2 cut(s) | 515, 533 |
| PscI | ACATGT | 1 cut(s) | 192 |
| PspCI | CACGTG | 2 cut(s) | 515, 533 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 1 cut(s) | 576 |
| PspPI | GGNCC | 1 cut(s) | 414 |
| PsuI | RGATCY | 1 cut(s) | 391 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| SaqAI | TTAA | 2 cut(s) | 345, 589 |
| Sau3AI | GATC | 5 cut(s) | 22, 252, 354, 391, 502 |
| Sau96I | GGNCC | 1 cut(s) | 414 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 3 cut(s) | 68, 217, 432 |
| SsiI | CCGC | 2 cut(s) | 151, 299 |
| SspMI | CTAG | 3 cut(s) | 27, 296, 411 |
| StyI | CCWWGG | 1 cut(s) | 121 |
| TaiI | ACGT | 6 cut(s) | 94, 214, 499, 517, 535, 547 |
| TasI | AATT | 3 cut(s) | 68, 217, 432 |
| TfiI | GAWTC | 2 cut(s) | 147, 333 |
| Tru1I | TTAA | 2 cut(s) | 345, 589 |
| Tru9I | TTAA | 2 cut(s) | 345, 589 |
| TscAI | CASTG | 2 cut(s) | 143, 424 |
| TspRI | CASTG | 2 cut(s) | 143, 424 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 127 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XspI | CTAG | 3 cut(s) | 27, 296, 411 |