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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 3 cut(s) | 480, 643, 780 |
| AccB1I | GGYRCC | 1 cut(s) | 406 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 909 |
| AccII | CGCG | 4 cut(s) | 499, 549, 799, 849 |
| AclWI | GGATC | 9 cut(s) | 160, 518, 556, 582, 818, 856, 882, 910, 1112 |
| AcoI | YGGCCR | 1 cut(s) | 1011 |
| AcsI | RAATTY | 1 cut(s) | 931 |
| AcuI | CTGAAG | 1 cut(s) | 1127 |
| AcvI | CACGTG | 1 cut(s) | 349 |
| AcyI | GRCGYC | 2 cut(s) | 12, 285 |
| AfaI | GTAC | 1 cut(s) | 974 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 130, 571, 654, 871, 909, 982, 1132, 1233 |
| AflII | CTTAAG | 1 cut(s) | 1178 |
| AgeI | ACCGGT | 1 cut(s) | 314 |
| AgsI | TTSAA | 3 cut(s) | 677, 961, 1150 |
| AleI | CACNNNNGTG | 1 cut(s) | 1007 |
| AluBI | AGCT | 5 cut(s) | 341, 395, 469, 625, 769 |
| AluI | AGCT | 5 cut(s) | 341, 395, 469, 625, 769 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 3 cut(s) | 244, 447, 747 |
| Alw44I | GTGCAC | 1 cut(s) | 344 |
| AlwI | GGATC | 9 cut(s) | 160, 518, 556, 582, 818, 856, 882, 910, 1112 |
| AoxI | GGCC | 4 cut(s) | 43, 656, 702, 1011 |
| ApaLI | GTGCAC | 1 cut(s) | 344 |
| ApoI | RAATTY | 1 cut(s) | 931 |
| AsiGI | ACCGGT | 1 cut(s) | 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1140 |
| AspLEI | GCGC | 8 cut(s) | 145, 481, 501, 551, 644, 781, 801, 851 |
| AspS9I | GGNCC | 4 cut(s) | 44, 121, 263, 703 |
| AsuC2I | CCSGG | 2 cut(s) | 572, 872 |
| AsuHPI | GGTGA | 2 cut(s) | 233, 398 |
| AsuNHI | GCTAGC | 1 cut(s) | 164 |
| AvaII | GGWCC | 2 cut(s) | 121, 263 |
| BaeGI | GKGCMC | 2 cut(s) | 348, 411 |
| BalI | TGGCCA | 1 cut(s) | 1013 |
| BanI | GGYRCC | 1 cut(s) | 406 |
| BanII | GRGCYC | 2 cut(s) | 495, 795 |
| BbrPI | CACGTG | 1 cut(s) | 349 |
| BbsI | GAAGAC | 1 cut(s) | 1157 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BccI | CCATC | 4 cut(s) | 35, 627, 1040, 1055 |
| BceAI | ACGGC | 2 cut(s) | 125, 207 |
| BclI | TGATCA | 1 cut(s) | 214 |
| BcnI | CCSGG | 2 cut(s) | 572, 872 |
| BcoDI | GTCTC | 3 cut(s) | 244, 447, 747 |
| BfaI | CTAG | 3 cut(s) | 165, 273, 1122 |
| BfmI | CTRYAG | 4 cut(s) | 457, 557, 734, 857 |
| BfrI | CTTAAG | 1 cut(s) | 1178 |
| Bme1390I | CCNGG | 2 cut(s) | 572, 872 |
| Bme18I | GGWCC | 2 cut(s) | 121, 263 |
| BmgT120I | GGNCC | 4 cut(s) | 44, 121, 263, 703 |
| BmiI | GGNNCC | 2 cut(s) | 265, 408 |
| BmrFI | CCNGG | 2 cut(s) | 572, 872 |
| BmsI | GCATC | 7 cut(s) | 379, 587, 603, 653, 887, 903, 1162 |
| BmtI | GCTAGC | 1 cut(s) | 168 |
| BpiI | GAAGAC | 1 cut(s) | 1157 |
| BpmI | CTGGAG | 4 cut(s) | 429, 517, 729, 817 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 1 cut(s) | 256 |
| BpuMI | CCSGG | 2 cut(s) | 572, 872 |
| BsaAI | YACGTR | 1 cut(s) | 349 |
| BsaHI | GRCGYC | 2 cut(s) | 12, 285 |
| BsaWI | WCCGGW | 2 cut(s) | 260, 314 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 130, 571, 654, 871, 909, 982, 1132, 1233 |
| Bse118I | RCCGGY | 3 cut(s) | 314, 513, 813 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseGI | GGATG | 4 cut(s) | 483, 644, 783, 1177 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 130, 571, 654, 871, 909, 982, 1132, 1233 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseMII | CTCAG | 1 cut(s) | 1094 |
| BseRI | GAGGAG | 1 cut(s) | 153 |
| BseSI | GKGCMC | 2 cut(s) | 348, 411 |
| BseYI | CCCAGC | 1 cut(s) | 1131 |
| BsgI | GTGCAG | 1 cut(s) | 654 |
| Bsh1236I | CGCG | 4 cut(s) | 499, 549, 799, 849 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshFI | GGCC | 4 cut(s) | 45, 658, 704, 1013 |
| BshNI | GGYRCC | 1 cut(s) | 406 |
| BshTI | ACCGGT | 1 cut(s) | 314 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 6 cut(s) | 261, 315, 514, 572, 814, 872 |
| BslFI | GGGAC | 2 cut(s) | 249, 1197 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 130, 571, 654, 871, 909, 982, 1132, 1233 |
| BsmAI | GTCTC | 3 cut(s) | 244, 447, 747 |
| BsmFI | GGGAC | 2 cut(s) | 249, 1197 |
| BsnI | GGCC | 4 cut(s) | 45, 658, 704, 1013 |
| Bsp1286I | GDGCHC | 4 cut(s) | 348, 411, 495, 795 |
| BspANI | GGCC | 4 cut(s) | 45, 658, 704, 1013 |
| BspCNI | CTCAG | 1 cut(s) | 1095 |
| BspFNI | CGCG | 4 cut(s) | 499, 549, 799, 849 |
| BspHI | TCATGA | 1 cut(s) | 1201 |
| BspLI | GGNNCC | 2 cut(s) | 265, 408 |
| BspMAI | CTGCAG | 2 cut(s) | 461, 861 |
| BspOI | GCTAGC | 1 cut(s) | 168 |
| BspPI | GGATC | 9 cut(s) | 160, 518, 556, 582, 818, 856, 882, 910, 1112 |
| BspT107I | GGYRCC | 1 cut(s) | 406 |
| BspTI | CTTAAG | 1 cut(s) | 1178 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BsrFI | RCCGGY | 3 cut(s) | 314, 513, 813 |
| BssAI | RCCGGY | 3 cut(s) | 314, 513, 813 |
| BssNI | GRCGYC | 2 cut(s) | 12, 285 |
| Bst4CI | ACNGT | 6 cut(s) | 103, 206, 441, 980, 1167, 1228 |
| BstACI | GRCGYC | 2 cut(s) | 12, 285 |
| BstAFI | CTTAAG | 1 cut(s) | 1178 |
| BstBAI | YACGTR | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 5 cut(s) | 86, 166, 627, 656, 1250 |
| BstDEI | CTNAG | 3 cut(s) | 27, 948, 1103 |
| BstF5I | GGATG | 4 cut(s) | 483, 644, 783, 1177 |
| BstFNI | CGCG | 4 cut(s) | 499, 549, 799, 849 |
| BstHHI | GCGC | 8 cut(s) | 145, 481, 501, 551, 644, 781, 801, 851 |
| BstMAI | GTCTC | 3 cut(s) | 244, 447, 747 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstNSI | RCATGY | 1 cut(s) | 88 |
| BstSCI | CCNGG | 2 cut(s) | 570, 870 |
| BstSFI | CTRYAG | 4 cut(s) | 457, 557, 734, 857 |
| BstSLI | GKGCMC | 2 cut(s) | 348, 411 |
| BstUI | CGCG | 4 cut(s) | 499, 549, 799, 849 |
| BstV2I | GAAGAC | 1 cut(s) | 1157 |
| BstX2I | RGATCY | 4 cut(s) | 523, 561, 823, 861 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1009 |
| BstYI | RGATCY | 4 cut(s) | 523, 561, 823, 861 |
| BsuRI | GGCC | 4 cut(s) | 45, 658, 704, 1013 |
| BtsCI | GGATG | 4 cut(s) | 483, 644, 783, 1177 |
| BtsI | GCAGTG | 3 cut(s) | 471, 771, 1023 |
| BtsIMutI | CAGTG | 6 cut(s) | 162, 471, 771, 1023, 1044, 1238 |
| Cac8I | GCNNGC | 5 cut(s) | 86, 166, 627, 656, 1250 |
| CciI | TCATGA | 1 cut(s) | 1201 |
| CfoI | GCGC | 8 cut(s) | 145, 481, 501, 551, 644, 781, 801, 851 |
| Cfr10I | RCCGGY | 3 cut(s) | 314, 513, 813 |
| Cfr13I | GGNCC | 4 cut(s) | 44, 121, 263, 703 |
| CseI | GACGC | 1 cut(s) | 274 |
| Csp6I | GTAC | 1 cut(s) | 973 |
| CspAI | ACCGGT | 1 cut(s) | 314 |
| CviAII | CATG | 3 cut(s) | 85, 909, 1202 |
| CviQI | GTAC | 1 cut(s) | 973 |
| DdeI | CTNAG | 3 cut(s) | 27, 948, 1103 |
| EaeI | YGGCCR | 1 cut(s) | 1011 |
| Eco24I | GRGCYC | 2 cut(s) | 495, 795 |
| Eco47I | GGWCC | 2 cut(s) | 121, 263 |
| Eco57I | CTGAAG | 1 cut(s) | 1127 |
| Eco72I | CACGTG | 1 cut(s) | 349 |
| EcoRI | GAATTC | 1 cut(s) | 931 |
| EcoT38I | GRGCYC | 2 cut(s) | 495, 795 |
| FaeI | CATG | 3 cut(s) | 88, 912, 1205 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 941, 973 |
| FaqI | GGGAC | 2 cut(s) | 249, 1197 |
| FatI | CATG | 3 cut(s) | 84, 908, 1201 |
| FauI | CCCGC | 7 cut(s) | 190, 504, 554, 599, 804, 854, 899 |
| FbaI | TGATCA | 1 cut(s) | 214 |
| FokI | GGATG | 4 cut(s) | 470, 631, 770, 1184 |
| FriOI | GRGCYC | 2 cut(s) | 495, 795 |
| FspBI | CTAG | 3 cut(s) | 165, 273, 1122 |
| FspI | TGCGCA | 3 cut(s) | 480, 643, 780 |
| GlaI | GCGC | 8 cut(s) | 144, 480, 500, 550, 643, 780, 800, 850 |
| GsaI | CCCAGC | 1 cut(s) | 1135 |
| GsuI | CTGGAG | 4 cut(s) | 429, 517, 729, 817 |
| HaeIII | GGCC | 4 cut(s) | 45, 658, 704, 1013 |
| HapII | CCGG | 6 cut(s) | 261, 315, 514, 572, 814, 872 |
| HgaI | GACGC | 1 cut(s) | 274 |
| HhaI | GCGC | 8 cut(s) | 145, 481, 501, 551, 644, 781, 801, 851 |
| Hin1I | GRCGYC | 2 cut(s) | 12, 285 |
| Hin1II | CATG | 3 cut(s) | 88, 912, 1205 |
| Hin6I | GCGC | 8 cut(s) | 143, 479, 499, 549, 642, 779, 799, 849 |
| HinP1I | GCGC | 8 cut(s) | 143, 479, 499, 549, 642, 779, 799, 849 |
| HpaII | CCGG | 6 cut(s) | 261, 315, 514, 572, 814, 872 |
| HphI | GGTGA | 2 cut(s) | 233, 398 |
| Hpy166II | GTNNAC | 1 cut(s) | 346 |
| Hpy188I | TCNGA | 7 cut(s) | 121, 178, 189, 338, 991, 1072, 1104 |
| Hpy188III | TCNNGA | 6 cut(s) | 509, 534, 677, 809, 834, 1202 |
| Hpy8I | GTNNAC | 1 cut(s) | 346 |
| Hpy99I | CGWCG | 2 cut(s) | 58, 613 |
| HpyAV | CCTTC | 4 cut(s) | 512, 812, 946, 1151 |
| HpyCH4III | ACNGT | 6 cut(s) | 103, 206, 441, 980, 1167, 1228 |
| HpyCH4IV | ACGT | 2 cut(s) | 53, 348 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 948, 1103 |
| HpySE526I | ACGT | 2 cut(s) | 53, 348 |
| Hsp92I | GRCGYC | 2 cut(s) | 12, 285 |
| Hsp92II | CATG | 3 cut(s) | 88, 912, 1205 |
| HspAI | GCGC | 8 cut(s) | 143, 479, 499, 549, 642, 779, 799, 849 |
| Ksp22I | TGATCA | 1 cut(s) | 214 |
| LmnI | GCTCC | 3 cut(s) | 140, 338, 1218 |
| LweI | GCATC | 7 cut(s) | 379, 587, 603, 653, 887, 903, 1162 |
| MaeI | CTAG | 3 cut(s) | 165, 273, 1122 |
| MaeII | ACGT | 2 cut(s) | 53, 348 |
| MaeIII | GTNAC | 3 cut(s) | 239, 277, 310 |
| MboII | GAAGA | 2 cut(s) | 702, 1162 |
| MflI | RGATCY | 4 cut(s) | 523, 561, 823, 861 |
| MhlI | GDGCHC | 4 cut(s) | 348, 411, 495, 795 |
| MlsI | TGGCCA | 1 cut(s) | 1013 |
| MluCI | AATT | 4 cut(s) | 183, 931, 1220, 1261 |
| MluNI | TGGCCA | 1 cut(s) | 1013 |
| MmeI | TCCRAC | 5 cut(s) | 74, 115, 201, 322, 943 |
| Mox20I | TGGCCA | 1 cut(s) | 1013 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1140 |
| MscI | TGGCCA | 1 cut(s) | 1013 |
| MseI | TTAA | 3 cut(s) | 371, 1094, 1179 |
| MslI | CAYNNNNRTG | 2 cut(s) | 101, 1007 |
| Msp20I | TGGCCA | 1 cut(s) | 1013 |
| MspA1I | CMGCKG | 1 cut(s) | 395 |
| MspCI | CTTAAG | 1 cut(s) | 1178 |
| MspI | CCGG | 6 cut(s) | 261, 315, 514, 572, 814, 872 |
| MspR9I | CCNGG | 2 cut(s) | 572, 872 |
| MvnI | CGCG | 4 cut(s) | 499, 549, 799, 849 |
| NciI | CCSGG | 2 cut(s) | 572, 872 |
| NheI | GCTAGC | 1 cut(s) | 164 |
| NlaIII | CATG | 3 cut(s) | 88, 912, 1205 |
| NlaIV | GGNNCC | 2 cut(s) | 265, 408 |
| NmeAIII | GCCGAG | 1 cut(s) | 680 |
| NmuCI | GTSAC | 2 cut(s) | 239, 310 |
| NsbI | TGCGCA | 3 cut(s) | 480, 643, 780 |
| NspI | RCATGY | 1 cut(s) | 88 |
| OliI | CACNNNNGTG | 1 cut(s) | 1007 |
| PaeI | GCATGC | 1 cut(s) | 88 |
| PagI | TCATGA | 1 cut(s) | 1201 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1140 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 909 |
| PinAI | ACCGGT | 1 cut(s) | 314 |
| PmaCI | CACGTG | 1 cut(s) | 349 |
| PmlI | CACGTG | 1 cut(s) | 349 |
| Ppu21I | YACGTR | 1 cut(s) | 349 |
| PspCI | CACGTG | 1 cut(s) | 349 |
| PspFI | CCCAGC | 1 cut(s) | 1131 |
| PspN4I | GGNNCC | 2 cut(s) | 265, 408 |
| PspPI | GGNCC | 4 cut(s) | 44, 121, 263, 703 |
| PstI | CTGCAG | 2 cut(s) | 461, 861 |
| PsuI | RGATCY | 4 cut(s) | 523, 561, 823, 861 |
| PvuII | CAGCTG | 1 cut(s) | 395 |
| RsaI | GTAC | 1 cut(s) | 974 |
| RsaNI | GTAC | 1 cut(s) | 973 |
| RseI | CAYNNNNRTG | 2 cut(s) | 101, 1007 |
| SaqAI | TTAA | 3 cut(s) | 371, 1094, 1179 |
| Sau96I | GGNCC | 4 cut(s) | 44, 121, 263, 703 |
| ScrFI | CCNGG | 2 cut(s) | 572, 872 |
| SduI | GDGCHC | 4 cut(s) | 348, 411, 495, 795 |
| SfaNI | GCATC | 7 cut(s) | 379, 587, 603, 653, 887, 903, 1162 |
| SfcI | CTRYAG | 4 cut(s) | 457, 557, 734, 857 |
| SinI | GGWCC | 2 cut(s) | 121, 263 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 101, 1007 |
| SmlI | CTYRAG | 2 cut(s) | 235, 1178 |
| SmoI | CTYRAG | 2 cut(s) | 235, 1178 |
| SphI | GCATGC | 1 cut(s) | 88 |
| Sse9I | AATT | 4 cut(s) | 183, 931, 1220, 1261 |
| SspMI | CTAG | 3 cut(s) | 165, 273, 1122 |
| StyD4I | CCNGG | 2 cut(s) | 570, 870 |
| TaaI | ACNGT | 6 cut(s) | 103, 206, 441, 980, 1167, 1228 |
| TaiI | ACGT | 2 cut(s) | 56, 351 |
| TaqI | TCGA | 5 cut(s) | 56, 586, 886, 924, 935 |
| TasI | AATT | 4 cut(s) | 183, 931, 1220, 1261 |
| Tru1I | TTAA | 3 cut(s) | 371, 1094, 1179 |
| Tru9I | TTAA | 3 cut(s) | 371, 1094, 1179 |
| TscAI | CASTG | 6 cut(s) | 162, 478, 778, 1030, 1051, 1238 |
| TseFI | GTSAC | 2 cut(s) | 239, 310 |
| Tsp45I | GTSAC | 2 cut(s) | 239, 310 |
| TspDTI | ATGAA | 3 cut(s) | 85, 1190, 1254 |
| TspRI | CASTG | 6 cut(s) | 162, 478, 778, 1030, 1051, 1238 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 909 |
| Vha464I | CTTAAG | 1 cut(s) | 1178 |
| VneI | GTGCAC | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 2 cut(s) | 121, 263 |
| XapI | RAATTY | 1 cut(s) | 931 |
| XceI | RCATGY | 1 cut(s) | 88 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 131 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1140 |
| XspI | CTAG | 3 cut(s) | 165, 273, 1122 |