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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 253, 301, 886, 984 |
| AclWI | GGATC | 6 cut(s) | 2, 194, 349, 599, 824, 910 |
| AcsI | RAATTY | 5 cut(s) | 23, 227, 281, 319, 534 |
| AcuI | CTGAAG | 1 cut(s) | 1059 |
| AcvI | CACGTG | 2 cut(s) | 617, 635 |
| AdeI | CACNNNGTG | 2 cut(s) | 635, 707 |
| AfaI | GTAC | 3 cut(s) | 220, 800, 1044 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 240 |
| AflIII | ACRYGT | 2 cut(s) | 294, 311 |
| AgsI | TTSAA | 9 cut(s) | 53, 226, 286, 387, 448, 667, 722, 824, 1089 |
| AjiI | CACGTC | 2 cut(s) | 314, 599 |
| AluBI | AGCT | 2 cut(s) | 207, 454 |
| AluI | AGCT | 2 cut(s) | 207, 454 |
| AlwI | GGATC | 6 cut(s) | 2, 194, 349, 599, 824, 910 |
| Ama87I | CYCGRG | 1 cut(s) | 539 |
| AoxI | GGCC | 1 cut(s) | 515 |
| ApeKI | GCWGC | 1 cut(s) | 1024 |
| ApoI | RAATTY | 5 cut(s) | 23, 227, 281, 319, 534 |
| AspA2I | CCTAGG | 1 cut(s) | 889 |
| AspS9I | GGNCC | 1 cut(s) | 1004 |
| AsuHPI | GGTGA | 2 cut(s) | 172, 829 |
| AvaI | CYCGRG | 1 cut(s) | 539 |
| AvaII | GGWCC | 1 cut(s) | 1004 |
| AvrII | CCTAGG | 1 cut(s) | 889 |
| BaeGI | GKGCMC | 1 cut(s) | 897 |
| BbrPI | CACGTG | 2 cut(s) | 617, 635 |
| BbsI | GAAGAC | 1 cut(s) | 368 |
| BbvI | GCAGC | 1 cut(s) | 1036 |
| BccI | CCATC | 1 cut(s) | 122 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 884, 918 |
| BclI | TGATCA | 1 cut(s) | 456 |
| BfaI | CTAG | 5 cut(s) | 204, 398, 789, 890, 1008 |
| BisI | GCNGC | 2 cut(s) | 302, 1025 |
| BlnI | CCTAGG | 1 cut(s) | 889 |
| BlsI | GCNGC | 2 cut(s) | 303, 1026 |
| Bme18I | GGWCC | 1 cut(s) | 1004 |
| BmeT110I | CYCGRG | 1 cut(s) | 539 |
| BmgBI | CACGTC | 2 cut(s) | 314, 599 |
| BmgT120I | GGNCC | 1 cut(s) | 1004 |
| BpiI | GAAGAC | 1 cut(s) | 368 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| BsaAI | YACGTR | 2 cut(s) | 617, 635 |
| BsaJI | CCNNGG | 2 cut(s) | 540, 889 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 240 |
| Bse1I | ACTGG | 1 cut(s) | 406 |
| Bse3DI | GCAATG | 1 cut(s) | 1028 |
| BseDI | CCNNGG | 2 cut(s) | 540, 889 |
| BseGI | GGATG | 2 cut(s) | 650, 943 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BseMI | GCAATG | 1 cut(s) | 1028 |
| BseMII | CTCAG | 2 cut(s) | 54, 176 |
| BseNI | ACTGG | 1 cut(s) | 406 |
| BseSI | GKGCMC | 1 cut(s) | 897 |
| BseXI | GCAGC | 1 cut(s) | 1036 |
| BshFI | GGCC | 1 cut(s) | 517 |
| BsiHKCI | CYCGRG | 1 cut(s) | 539 |
| BslFI | GGGAC | 2 cut(s) | 538, 869 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BsmFI | GGGAC | 2 cut(s) | 538, 869 |
| BsnI | GGCC | 1 cut(s) | 517 |
| BsoBI | CYCGRG | 1 cut(s) | 539 |
| Bsp1286I | GDGCHC | 1 cut(s) | 897 |
| Bsp143I | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| BspACI | CCGC | 4 cut(s) | 253, 301, 886, 984 |
| BspANI | GGCC | 1 cut(s) | 517 |
| BspCNI | CTCAG | 2 cut(s) | 53, 177 |
| BspPI | GGATC | 6 cut(s) | 2, 194, 349, 599, 824, 910 |
| BsrDI | GCAATG | 1 cut(s) | 1028 |
| BsrI | ACTGG | 1 cut(s) | 406 |
| BssECI | CCNNGG | 2 cut(s) | 540, 889 |
| BssMI | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| BssT1I | CCWWGG | 1 cut(s) | 889 |
| Bst4CI | ACNGT | 6 cut(s) | 62, 150, 235, 274, 686, 707 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1030 |
| BstBAI | YACGTR | 2 cut(s) | 617, 635 |
| BstC8I | GCNNGC | 2 cut(s) | 1112, 1116 |
| BstDEI | CTNAG | 3 cut(s) | 40, 185, 477 |
| BstF5I | GGATG | 2 cut(s) | 650, 943 |
| BstKTI | GATC | 7 cut(s) | 10, 202, 357, 459, 607, 819, 918 |
| BstMBI | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 1030 |
| BstNSI | RCATGY | 1 cut(s) | 298 |
| BstSLI | GKGCMC | 1 cut(s) | 897 |
| BstV1I | GCAGC | 1 cut(s) | 1036 |
| BstV2I | GAAGAC | 1 cut(s) | 368 |
| BsuRI | GGCC | 1 cut(s) | 517 |
| BtrI | CACGTC | 2 cut(s) | 314, 599 |
| BtsCI | GGATG | 2 cut(s) | 650, 943 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 5 cut(s) | 105, 126, 245, 703, 858 |
| Cac8I | GCNNGC | 2 cut(s) | 1112, 1116 |
| Cfr13I | GGNCC | 1 cut(s) | 1004 |
| Csp6I | GTAC | 3 cut(s) | 219, 799, 1043 |
| CviAII | CATG | 5 cut(s) | 295, 373, 692, 881, 910 |
| CviQI | GTAC | 3 cut(s) | 219, 799, 1043 |
| DdeI | CTNAG | 3 cut(s) | 40, 185, 477 |
| DpnI | GATC | 7 cut(s) | 9, 201, 356, 458, 606, 818, 917 |
| DpnII | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| DraI | TTTAAA | 1 cut(s) | 927 |
| DraIII | CACNNNGTG | 2 cut(s) | 635, 707 |
| EciI | GGCGGA | 1 cut(s) | 973 |
| Eco130I | CCWWGG | 1 cut(s) | 889 |
| Eco147I | AGGCCT | 1 cut(s) | 517 |
| Eco47I | GGWCC | 1 cut(s) | 1004 |
| Eco57I | CTGAAG | 1 cut(s) | 1059 |
| Eco72I | CACGTG | 2 cut(s) | 617, 635 |
| Eco88I | CYCGRG | 1 cut(s) | 539 |
| EcoRI | GAATTC | 1 cut(s) | 281 |
| EcoT14I | CCWWGG | 1 cut(s) | 889 |
| ErhI | CCWWGG | 1 cut(s) | 889 |
| FaeI | CATG | 5 cut(s) | 298, 376, 695, 884, 913 |
| FaqI | GGGAC | 2 cut(s) | 538, 869 |
| FatI | CATG | 5 cut(s) | 294, 372, 691, 880, 909 |
| FauNDI | CATATG | 1 cut(s) | 829 |
| FbaI | TGATCA | 1 cut(s) | 456 |
| Fnu4HI | GCNGC | 2 cut(s) | 302, 1025 |
| FokI | GGATG | 2 cut(s) | 657, 930 |
| Fsp4HI | GCNGC | 2 cut(s) | 302, 1025 |
| FspBI | CTAG | 5 cut(s) | 204, 398, 789, 890, 1008 |
| GluI | GCNGC | 2 cut(s) | 302, 1025 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 1 cut(s) | 517 |
| Hin1II | CATG | 5 cut(s) | 298, 376, 695, 884, 913 |
| HinfI | GANTC | 5 cut(s) | 38, 435, 781, 824, 863 |
| HphI | GGTGA | 2 cut(s) | 172, 829 |
| Hpy188I | TCNGA | 6 cut(s) | 43, 73, 154, 186, 816, 1039 |
| Hpy188III | TCNNGA | 3 cut(s) | 358, 539, 905 |
| HpyAV | CCTTC | 6 cut(s) | 38, 232, 454, 747, 958, 1044 |
| HpyCH4III | ACNGT | 6 cut(s) | 62, 150, 235, 274, 686, 707 |
| HpyCH4IV | ACGT | 4 cut(s) | 313, 598, 616, 634 |
| HpyCH4V | TGCA | 6 cut(s) | 86, 469, 584, 629, 1024, 1110 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 1030 |
| HpyF3I | CTNAG | 3 cut(s) | 40, 185, 477 |
| HpySE526I | ACGT | 4 cut(s) | 313, 598, 616, 634 |
| Hsp92II | CATG | 5 cut(s) | 298, 376, 695, 884, 913 |
| Ksp22I | TGATCA | 1 cut(s) | 456 |
| Kzo9I | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| LmnI | GCTCC | 1 cut(s) | 652 |
| LpnPI | CCDG | 8 cut(s) | 33, 371, 401, 419, 531, 856, 913, 1059 |
| Lsp1109I | GCAGC | 1 cut(s) | 1036 |
| MaeI | CTAG | 5 cut(s) | 204, 398, 789, 890, 1008 |
| MaeII | ACGT | 4 cut(s) | 313, 598, 616, 634 |
| MaeIII | GTNAC | 2 cut(s) | 835, 905 |
| MalI | GATC | 7 cut(s) | 9, 201, 356, 458, 606, 818, 917 |
| MboI | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| MboII | GAAGA | 1 cut(s) | 373 |
| MhlI | GDGCHC | 1 cut(s) | 897 |
| MluCI | AATT | 8 cut(s) | 23, 227, 281, 319, 534, 547, 717, 763 |
| MlyI | GAGTC | 3 cut(s) | 32, 790, 857 |
| MmeI | TCCRAC | 3 cut(s) | 35, 44, 574 |
| MnlI | CCTC | 9 cut(s) | 180, 474, 484, 535, 748, 812, 1068, 1072, 1084 |
| MseI | TTAA | 2 cut(s) | 176, 926 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 1030 |
| NdeI | CATATG | 1 cut(s) | 829 |
| NdeII | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| NlaIII | CATG | 5 cut(s) | 298, 376, 695, 884, 913 |
| NmuCI | GTSAC | 2 cut(s) | 835, 905 |
| NspI | RCATGY | 1 cut(s) | 298 |
| PceI | AGGCCT | 1 cut(s) | 517 |
| PciI | ACATGT | 1 cut(s) | 294 |
| PfeI | GAWTC | 2 cut(s) | 435, 824 |
| PkrI | GCNGC | 2 cut(s) | 303, 1026 |
| PleI | GAGTC | 3 cut(s) | 32, 789, 857 |
| PmaCI | CACGTG | 2 cut(s) | 617, 635 |
| PmlI | CACGTG | 2 cut(s) | 617, 635 |
| PpsI | GAGTC | 3 cut(s) | 32, 789, 857 |
| Ppu21I | YACGTR | 2 cut(s) | 617, 635 |
| PscI | ACATGT | 1 cut(s) | 294 |
| PspCI | CACGTG | 2 cut(s) | 617, 635 |
| PspPI | GGNCC | 1 cut(s) | 1004 |
| RsaI | GTAC | 3 cut(s) | 220, 800, 1044 |
| RsaNI | GTAC | 3 cut(s) | 219, 799, 1043 |
| SaqAI | TTAA | 2 cut(s) | 176, 926 |
| SatI | GCNGC | 2 cut(s) | 302, 1025 |
| Sau3AI | GATC | 7 cut(s) | 7, 199, 354, 456, 604, 816, 915 |
| Sau96I | GGNCC | 1 cut(s) | 1004 |
| SchI | GAGTC | 3 cut(s) | 32, 790, 857 |
| SduI | GDGCHC | 1 cut(s) | 897 |
| SinI | GGWCC | 1 cut(s) | 1004 |
| Sse9I | AATT | 8 cut(s) | 23, 227, 281, 319, 534, 547, 717, 763 |
| SseBI | AGGCCT | 1 cut(s) | 517 |
| SsiI | CCGC | 4 cut(s) | 253, 301, 886, 984 |
| SspMI | CTAG | 5 cut(s) | 204, 398, 789, 890, 1008 |
| StuI | AGGCCT | 1 cut(s) | 517 |
| StyI | CCWWGG | 1 cut(s) | 889 |
| TaaI | ACNGT | 6 cut(s) | 62, 150, 235, 274, 686, 707 |
| TaiI | ACGT | 4 cut(s) | 316, 601, 619, 637 |
| TaqI | TCGA | 2 cut(s) | 16, 955 |
| TaqII | GACCGA | 1 cut(s) | 992 |
| TasI | AATT | 8 cut(s) | 23, 227, 281, 319, 534, 547, 717, 763 |
| TauI | GCSGC | 1 cut(s) | 304 |
| TfiI | GAWTC | 2 cut(s) | 435, 824 |
| Tru1I | TTAA | 2 cut(s) | 176, 926 |
| Tru9I | TTAA | 2 cut(s) | 176, 926 |
| TscAI | CASTG | 5 cut(s) | 112, 133, 245, 710, 865 |
| TseFI | GTSAC | 2 cut(s) | 835, 905 |
| TseI | GCWGC | 1 cut(s) | 1024 |
| Tsp45I | GTSAC | 2 cut(s) | 835, 905 |
| TspDTI | ATGAA | 5 cut(s) | 159, 261, 294, 759, 861 |
| TspGWI | ACGGA | 1 cut(s) | 954 |
| TspRI | CASTG | 5 cut(s) | 112, 133, 245, 710, 865 |
| VpaK11BI | GGWCC | 1 cut(s) | 1004 |
| XapI | RAATTY | 5 cut(s) | 23, 227, 281, 319, 534 |
| XceI | RCATGY | 1 cut(s) | 298 |
| XmaJI | CCTAGG | 1 cut(s) | 889 |
| XspI | CTAG | 5 cut(s) | 204, 398, 789, 890, 1008 |