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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1031 |
| Acc16I | TGCGCA | 1 cut(s) | 127 |
| AccI | GTMKAC | 1 cut(s) | 390 |
| AccII | CGCG | 3 cut(s) | 238, 372, 494 |
| AciI | CCGC | 7 cut(s) | 78, 107, 157, 201, 236, 370, 835 |
| AclWI | GGATC | 5 cut(s) | 94, 344, 425, 476, 701 |
| AcoI | YGGCCR | 1 cut(s) | 354 |
| AcsI | RAATTY | 2 cut(s) | 19, 83 |
| AcuI | CTGAAG | 1 cut(s) | 716 |
| AfaI | GTAC | 2 cut(s) | 572, 728 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 274, 468, 580, 721, 811 |
| AflIII | ACRYGT | 1 cut(s) | 876 |
| AgeI | ACCGGT | 1 cut(s) | 502 |
| AgsI | TTSAA | 3 cut(s) | 454, 528, 868 |
| AjiI | CACGTC | 1 cut(s) | 896 |
| AjnI | CCWGG | 1 cut(s) | 805 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 801, 833 |
| AluBI | AGCT | 2 cut(s) | 13, 971 |
| AluI | AGCT | 2 cut(s) | 13, 971 |
| Alw26I | GTCTC | 1 cut(s) | 902 |
| AlwI | GGATC | 5 cut(s) | 94, 344, 425, 476, 701 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 110 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| AoxI | GGCC | 5 cut(s) | 158, 241, 276, 311, 354 |
| ApeKI | GCWGC | 3 cut(s) | 13, 110, 128 |
| ApoI | RAATTY | 2 cut(s) | 19, 83 |
| AsiGI | ACCGGT | 1 cut(s) | 502 |
| AspLEI | GCGC | 3 cut(s) | 128, 494, 885 |
| AspS9I | GGNCC | 2 cut(s) | 242, 422 |
| AsuC2I | CCSGG | 2 cut(s) | 275, 333 |
| AsuHPI | GGTGA | 2 cut(s) | 492, 679 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| AvaII | GGWCC | 1 cut(s) | 422 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 554, 587 |
| BanII | GRGCYC | 1 cut(s) | 154 |
| BauI | CACGAG | 1 cut(s) | 288 |
| BbsI | GAAGAC | 1 cut(s) | 703 |
| BbvCI | CCTCAGC | 1 cut(s) | 315 |
| BbvI | GCAGC | 2 cut(s) | 97, 140 |
| BccI | CCATC | 4 cut(s) | 59, 511, 517, 582 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 72, 172, 206 |
| BciT130I | CCWGG | 1 cut(s) | 807 |
| BcnI | CCSGG | 2 cut(s) | 275, 333 |
| BcoDI | GTCTC | 1 cut(s) | 902 |
| BfaI | CTAG | 2 cut(s) | 711, 980 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 608 |
| BisI | GCNGC | 6 cut(s) | 14, 78, 108, 111, 129, 158 |
| BlsI | GCNGC | 6 cut(s) | 15, 79, 109, 112, 130, 159 |
| Bme1390I | CCNGG | 3 cut(s) | 275, 333, 807 |
| Bme18I | GGWCC | 1 cut(s) | 422 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BmgBI | CACGTC | 1 cut(s) | 896 |
| BmgT120I | GGNCC | 2 cut(s) | 242, 422 |
| BmiI | GGNNCC | 4 cut(s) | 76, 244, 424, 507 |
| BmrFI | CCNGG | 3 cut(s) | 275, 333, 807 |
| BmsI | GCATC | 4 cut(s) | 216, 247, 667, 751 |
| BpiI | GAAGAC | 1 cut(s) | 703 |
| Bpu10I | CCTNAGC | 1 cut(s) | 315 |
| BpuEI | CTTGAG | 1 cut(s) | 587 |
| BpuMI | CCSGG | 2 cut(s) | 275, 333 |
| BsaJI | CCNNGG | 1 cut(s) | 805 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 274, 468, 580, 721, 811 |
| Bse118I | RCCGGY | 1 cut(s) | 502 |
| Bse1I | ACTGG | 3 cut(s) | 314, 816, 988 |
| Bse3DI | GCAATG | 1 cut(s) | 76 |
| BseBI | CCWGG | 1 cut(s) | 807 |
| BseDI | CCNNGG | 1 cut(s) | 805 |
| BseGI | GGATG | 2 cut(s) | 360, 766 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 274, 468, 580, 721, 811 |
| BseMI | GCAATG | 1 cut(s) | 76 |
| BseMII | CTCAG | 3 cut(s) | 329, 528, 570 |
| BseNI | ACTGG | 3 cut(s) | 314, 816, 988 |
| BseXI | GCAGC | 2 cut(s) | 97, 140 |
| BseYI | CCCAGC | 3 cut(s) | 103, 153, 720 |
| Bsh1236I | CGCG | 3 cut(s) | 238, 372, 494 |
| BshFI | GGCC | 5 cut(s) | 160, 243, 278, 313, 356 |
| BshTI | ACCGGT | 1 cut(s) | 502 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiSI | CCGG | 4 cut(s) | 275, 333, 353, 503 |
| BslFI | GGGAC | 2 cut(s) | 180, 408 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 274, 468, 580, 721, 811 |
| BsmAI | GTCTC | 1 cut(s) | 902 |
| BsmBI | CGTCTC | 1 cut(s) | 902 |
| BsmFI | GGGAC | 2 cut(s) | 180, 408 |
| BsnI | GGCC | 5 cut(s) | 160, 243, 278, 313, 356 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| Bsp1286I | GDGCHC | 1 cut(s) | 154 |
| Bsp143I | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| BspACI | CCGC | 7 cut(s) | 78, 107, 157, 201, 236, 370, 835 |
| BspANI | GGCC | 5 cut(s) | 160, 243, 278, 313, 356 |
| BspCNI | CTCAG | 3 cut(s) | 328, 529, 569 |
| BspFNI | CGCG | 3 cut(s) | 238, 372, 494 |
| BspLI | GGNNCC | 4 cut(s) | 76, 244, 424, 507 |
| BspPI | GGATC | 5 cut(s) | 94, 344, 425, 476, 701 |
| BsrDI | GCAATG | 1 cut(s) | 76 |
| BsrFI | RCCGGY | 1 cut(s) | 502 |
| BsrI | ACTGG | 3 cut(s) | 314, 816, 988 |
| BssAI | RCCGGY | 1 cut(s) | 502 |
| BssECI | CCNNGG | 1 cut(s) | 805 |
| BssMI | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| BssSI | CACGAG | 1 cut(s) | 288 |
| Bst2BI | CACGAG | 1 cut(s) | 288 |
| Bst2UI | CCWGG | 1 cut(s) | 807 |
| Bst4CI | ACNGT | 1 cut(s) | 756 |
| BstC8I | GCNNGC | 5 cut(s) | 91, 177, 205, 262, 839 |
| BstDEI | CTNAG | 4 cut(s) | 315, 537, 556, 692 |
| BstEII | GGTNACC | 1 cut(s) | 498 |
| BstF5I | GGATG | 2 cut(s) | 360, 766 |
| BstFNI | CGCG | 3 cut(s) | 238, 372, 494 |
| BstHHI | GCGC | 3 cut(s) | 128, 494, 885 |
| BstKTI | GATC | 7 cut(s) | 102, 352, 420, 484, 489, 709, 939 |
| BstMAI | GTCTC | 1 cut(s) | 902 |
| BstMBI | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 185, 249, 270, 608 |
| BstNI | CCWGG | 1 cut(s) | 807 |
| BstNSI | RCATGY | 1 cut(s) | 880 |
| BstPI | GGTNACC | 1 cut(s) | 498 |
| BstSCI | CCNGG | 3 cut(s) | 273, 331, 805 |
| BstUI | CGCG | 3 cut(s) | 238, 372, 494 |
| BstV1I | GCAGC | 2 cut(s) | 97, 140 |
| BstV2I | GAAGAC | 1 cut(s) | 703 |
| BstX2I | RGATCY | 1 cut(s) | 99 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 309 |
| BstYI | RGATCY | 1 cut(s) | 99 |
| BsuRI | GGCC | 5 cut(s) | 160, 243, 278, 313, 356 |
| BtgZI | GCGATG | 1 cut(s) | 108 |
| BtrI | CACGTC | 1 cut(s) | 896 |
| BtsCI | GGATG | 2 cut(s) | 360, 766 |
| BtsI | GCAGTG | 2 cut(s) | 170, 621 |
| BtsIMutI | CAGTG | 4 cut(s) | 170, 621, 752, 827 |
| Cac8I | GCNNGC | 5 cut(s) | 91, 177, 205, 262, 839 |
| CaiI | CAGNNNCTG | 1 cut(s) | 110 |
| CfoI | GCGC | 3 cut(s) | 128, 494, 885 |
| Cfr10I | RCCGGY | 1 cut(s) | 502 |
| Cfr13I | GGNCC | 2 cut(s) | 242, 422 |
| CseI | GACGC | 2 cut(s) | 182, 202 |
| Csp6I | GTAC | 2 cut(s) | 571, 727 |
| CspAI | ACCGGT | 1 cut(s) | 502 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 889, 924 |
| CviAII | CATG | 1 cut(s) | 877 |
| CviQI | GTAC | 2 cut(s) | 571, 727 |
| DdeI | CTNAG | 4 cut(s) | 315, 537, 556, 692 |
| DpnI | GATC | 7 cut(s) | 101, 351, 419, 483, 488, 708, 938 |
| DpnII | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| EaeI | YGGCCR | 1 cut(s) | 354 |
| Eco24I | GRGCYC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 1 cut(s) | 422 |
| Eco57I | CTGAAG | 1 cut(s) | 716 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| Eco91I | GGTNACC | 1 cut(s) | 498 |
| EcoO65I | GGTNACC | 1 cut(s) | 498 |
| EcoRII | CCWGG | 1 cut(s) | 805 |
| EcoT38I | GRGCYC | 1 cut(s) | 154 |
| Esp3I | CGTCTC | 1 cut(s) | 902 |
| FaeI | CATG | 1 cut(s) | 880 |
| FaiI | YATR | 9 cut(s) | 270, 593, 702, 849, 878, 935, 977, 1005, 1031 |
| FaqI | GGGAC | 2 cut(s) | 180, 408 |
| FatI | CATG | 1 cut(s) | 876 |
| FauI | CCCGC | 3 cut(s) | 208, 243, 377 |
| FblI | GTMKAC | 1 cut(s) | 390 |
| Fnu4HI | GCNGC | 6 cut(s) | 14, 78, 108, 111, 129, 158 |
| FokI | GGATG | 2 cut(s) | 347, 773 |
| FriOI | GRGCYC | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 6 cut(s) | 14, 78, 108, 111, 129, 158 |
| FspBI | CTAG | 2 cut(s) | 711, 980 |
| FspI | TGCGCA | 1 cut(s) | 127 |
| GlaI | GCGC | 3 cut(s) | 127, 493, 884 |
| GluI | GCNGC | 6 cut(s) | 14, 78, 108, 111, 129, 158 |
| GsaI | CCCAGC | 3 cut(s) | 107, 157, 724 |
| HaeIII | GGCC | 5 cut(s) | 160, 243, 278, 313, 356 |
| HapII | CCGG | 4 cut(s) | 275, 333, 353, 503 |
| HgaI | GACGC | 2 cut(s) | 182, 202 |
| HhaI | GCGC | 3 cut(s) | 128, 494, 885 |
| Hin1II | CATG | 1 cut(s) | 880 |
| Hin6I | GCGC | 3 cut(s) | 126, 492, 883 |
| HinP1I | GCGC | 3 cut(s) | 126, 492, 883 |
| HincII | GTYRAC | 1 cut(s) | 391 |
| HindII | GTYRAC | 1 cut(s) | 391 |
| HinfI | GANTC | 6 cut(s) | 119, 384, 524, 554, 831, 946 |
| HpaII | CCGG | 4 cut(s) | 275, 333, 353, 503 |
| HphI | GGTGA | 2 cut(s) | 492, 679 |
| Hpy166II | GTNNAC | 1 cut(s) | 391 |
| Hpy188I | TCNGA | 6 cut(s) | 463, 486, 514, 559, 589, 743 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 791 |
| Hpy8I | GTNNAC | 1 cut(s) | 391 |
| Hpy99I | CGWCG | 2 cut(s) | 392, 395 |
| HpyAV | CCTTC | 2 cut(s) | 554, 740 |
| HpyCH4III | ACNGT | 1 cut(s) | 756 |
| HpyCH4IV | ACGT | 2 cut(s) | 775, 895 |
| HpyCH4V | TGCA | 3 cut(s) | 89, 147, 207 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 185, 249, 270, 608 |
| HpyF3I | CTNAG | 4 cut(s) | 315, 537, 556, 692 |
| HpySE526I | ACGT | 2 cut(s) | 775, 895 |
| Hsp92II | CATG | 1 cut(s) | 880 |
| HspAI | GCGC | 3 cut(s) | 126, 492, 883 |
| Kzo9I | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| LmnI | GCTCC | 3 cut(s) | 10, 74, 807 |
| Lsp1109I | GCAGC | 2 cut(s) | 97, 140 |
| LweI | GCATC | 4 cut(s) | 216, 247, 667, 751 |
| MaeI | CTAG | 2 cut(s) | 711, 980 |
| MaeII | ACGT | 2 cut(s) | 775, 895 |
| MaeIII | GTNAC | 1 cut(s) | 498 |
| MalI | GATC | 7 cut(s) | 101, 351, 419, 483, 488, 708, 938 |
| MboI | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| MboII | GAAGA | 3 cut(s) | 466, 708, 938 |
| MfeI | CAATTG | 1 cut(s) | 440 |
| MflI | RGATCY | 1 cut(s) | 99 |
| MhlI | GDGCHC | 1 cut(s) | 154 |
| MluCI | AATT | 7 cut(s) | 19, 83, 440, 616, 684, 901, 964 |
| MlyI | GAGTC | 3 cut(s) | 113, 548, 940 |
| MmeI | TCCRAC | 2 cut(s) | 486, 978 |
| MnlI | CCTC | 5 cut(s) | 21, 171, 308, 324, 905 |
| MseI | TTAA | 4 cut(s) | 281, 683, 768, 887 |
| MspA1I | CMGCKG | 2 cut(s) | 107, 157 |
| MspI | CCGG | 4 cut(s) | 275, 333, 353, 503 |
| MspR9I | CCNGG | 3 cut(s) | 275, 333, 807 |
| MunI | CAATTG | 1 cut(s) | 440 |
| MvaI | CCWGG | 1 cut(s) | 807 |
| MvnI | CGCG | 3 cut(s) | 238, 372, 494 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 185, 249, 270, 608 |
| NciI | CCSGG | 2 cut(s) | 275, 333 |
| NdeII | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| NlaIII | CATG | 1 cut(s) | 880 |
| NlaIV | GGNNCC | 4 cut(s) | 76, 244, 424, 507 |
| NmuCI | GTSAC | 1 cut(s) | 498 |
| NsbI | TGCGCA | 1 cut(s) | 127 |
| NspI | RCATGY | 1 cut(s) | 880 |
| PaeR7I | CTCGAG | 1 cut(s) | 57 |
| PciI | ACATGT | 1 cut(s) | 876 |
| PfeI | GAWTC | 3 cut(s) | 384, 524, 831 |
| PinAI | ACCGGT | 1 cut(s) | 502 |
| PkrI | GCNGC | 6 cut(s) | 15, 79, 109, 112, 130, 159 |
| PleI | GAGTC | 3 cut(s) | 113, 548, 940 |
| PpsI | GAGTC | 3 cut(s) | 113, 548, 940 |
| PscI | ACATGT | 1 cut(s) | 876 |
| PsiI | TTATAA | 1 cut(s) | 1031 |
| Psp6I | CCWGG | 1 cut(s) | 805 |
| PspEI | GGTNACC | 1 cut(s) | 498 |
| PspFI | CCCAGC | 3 cut(s) | 103, 153, 720 |
| PspGI | CCWGG | 1 cut(s) | 805 |
| PspN4I | GGNNCC | 4 cut(s) | 76, 244, 424, 507 |
| PspPI | GGNCC | 2 cut(s) | 242, 422 |
| PstNI | CAGNNNCTG | 1 cut(s) | 110 |
| PsuI | RGATCY | 1 cut(s) | 99 |
| RsaI | GTAC | 2 cut(s) | 572, 728 |
| RsaNI | GTAC | 2 cut(s) | 571, 727 |
| SalI | GTCGAC | 1 cut(s) | 389 |
| SaqAI | TTAA | 4 cut(s) | 281, 683, 768, 887 |
| SatI | GCNGC | 6 cut(s) | 14, 78, 108, 111, 129, 158 |
| Sau3AI | GATC | 7 cut(s) | 99, 349, 417, 481, 486, 706, 936 |
| Sau96I | GGNCC | 2 cut(s) | 242, 422 |
| SchI | GAGTC | 3 cut(s) | 113, 548, 940 |
| ScrFI | CCNGG | 3 cut(s) | 275, 333, 807 |
| SduI | GDGCHC | 1 cut(s) | 154 |
| SfaNI | GCATC | 4 cut(s) | 216, 247, 667, 751 |
| Sfr274I | CTCGAG | 1 cut(s) | 57 |
| SgrDI | CGTCGACG | 1 cut(s) | 389 |
| SinI | GGWCC | 1 cut(s) | 422 |
| SlaI | CTCGAG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 2 cut(s) | 57, 566 |
| SmoI | CTYRAG | 2 cut(s) | 57, 566 |
| Sse9I | AATT | 7 cut(s) | 19, 83, 440, 616, 684, 901, 964 |
| SsiI | CCGC | 7 cut(s) | 78, 107, 157, 201, 236, 370, 835 |
| SspMI | CTAG | 2 cut(s) | 711, 980 |
| StyD4I | CCNGG | 3 cut(s) | 273, 331, 805 |
| TaaI | ACNGT | 1 cut(s) | 756 |
| TaiI | ACGT | 2 cut(s) | 778, 898 |
| TaqI | TCGA | 4 cut(s) | 32, 58, 390, 532 |
| TaqII | GACCGA | 1 cut(s) | 410 |
| TasI | AATT | 7 cut(s) | 19, 83, 440, 616, 684, 901, 964 |
| TauI | GCSGC | 3 cut(s) | 80, 110, 160 |
| TfiI | GAWTC | 3 cut(s) | 384, 524, 831 |
| Tru1I | TTAA | 4 cut(s) | 281, 683, 768, 887 |
| Tru9I | TTAA | 4 cut(s) | 281, 683, 768, 887 |
| TscAI | CASTG | 4 cut(s) | 177, 628, 759, 827 |
| TseFI | GTSAC | 1 cut(s) | 498 |
| TseI | GCWGC | 3 cut(s) | 13, 110, 128 |
| Tsp45I | GTSAC | 1 cut(s) | 498 |
| TspDTI | ATGAA | 2 cut(s) | 50, 666 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| TspRI | CASTG | 4 cut(s) | 177, 628, 759, 827 |
| VpaK11BI | GGWCC | 1 cut(s) | 422 |
| XapI | RAATTY | 2 cut(s) | 19, 83 |
| XceI | RCATGY | 1 cut(s) | 880 |
| XhoI | CTCGAG | 1 cut(s) | 57 |
| XmiI | GTMKAC | 1 cut(s) | 390 |
| XspI | CTAG | 2 cut(s) | 711, 980 |