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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 583 |
| AciI | CCGC | 3 cut(s) | 207, 812, 824 |
| AclWI | GGATC | 2 cut(s) | 361, 542 |
| AcoI | YGGCCR | 3 cut(s) | 37, 233, 654 |
| AcsI | RAATTY | 1 cut(s) | 382 |
| AcuI | CTGAAG | 1 cut(s) | 557 |
| AfaI | GTAC | 2 cut(s) | 415, 569 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 83, 133, 152, 346, 423, 562, 652, 663 |
| AflII | CTTAAG | 1 cut(s) | 608 |
| AflIII | ACRYGT | 2 cut(s) | 170, 717 |
| AgsI | TTSAA | 2 cut(s) | 580, 709 |
| AjiI | CACGTC | 2 cut(s) | 173, 737 |
| Alw26I | GTCTC | 2 cut(s) | 272, 743 |
| AlwI | GGATC | 2 cut(s) | 361, 542 |
| AoxI | GGCC | 4 cut(s) | 37, 233, 654, 696 |
| ApeKI | GCWGC | 1 cut(s) | 269 |
| ApoI | RAATTY | 1 cut(s) | 382 |
| AspLEI | GCGC | 4 cut(s) | 139, 197, 269, 726 |
| AspS9I | GGNCC | 2 cut(s) | 349, 696 |
| AsuHPI | GGTGA | 5 cut(s) | 155, 180, 221, 520, 801 |
| AvaII | GGWCC | 1 cut(s) | 349 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 397, 430 |
| BanI | GGYRCC | 1 cut(s) | 583 |
| BbvI | GCAGC | 1 cut(s) | 256 |
| BccI | CCATC | 3 cut(s) | 168, 244, 354 |
| BceAI | ACGGC | 2 cut(s) | 52, 641 |
| BciVI | GTATCC | 1 cut(s) | 246 |
| BcoDI | GTCTC | 2 cut(s) | 272, 743 |
| BfaI | CTAG | 4 cut(s) | 114, 552, 821, 829 |
| BfoI | RGCGCY | 2 cut(s) | 140, 270 |
| BfrI | CTTAAG | 1 cut(s) | 608 |
| BfuI | GTATCC | 1 cut(s) | 246 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 449 |
| BglII | AGATCT | 1 cut(s) | 287 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| Bme18I | GGWCC | 1 cut(s) | 349 |
| BmgBI | CACGTC | 2 cut(s) | 173, 737 |
| BmgT120I | GGNCC | 2 cut(s) | 349, 696 |
| BmiI | GGNNCC | 3 cut(s) | 88, 350, 585 |
| BmsI | GCATC | 4 cut(s) | 165, 191, 218, 592 |
| BpuEI | CTTGAG | 2 cut(s) | 296, 430 |
| BsaBI | GATNNNNATC | 1 cut(s) | 257 |
| BsaI | GGTCTC | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 132 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 83, 133, 152, 346, 423, 562, 652, 663 |
| Bse118I | RCCGGY | 4 cut(s) | 152, 178, 215, 231 |
| Bse1I | ACTGG | 1 cut(s) | 268 |
| Bse8I | GATNNNNATC | 1 cut(s) | 257 |
| BseDI | CCNNGG | 2 cut(s) | 82, 132 |
| BseGI | GGATG | 6 cut(s) | 68, 156, 182, 209, 365, 607 |
| BseJI | GATNNNNATC | 1 cut(s) | 257 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 83, 133, 152, 346, 423, 562, 652, 663 |
| BseMII | CTCAG | 3 cut(s) | 105, 413, 754 |
| BseNI | ACTGG | 1 cut(s) | 268 |
| BseX3I | CGGCCG | 1 cut(s) | 37 |
| BseXI | GCAGC | 1 cut(s) | 256 |
| Bsh1285I | CGRYCG | 1 cut(s) | 40 |
| BshFI | GGCC | 4 cut(s) | 39, 235, 656, 698 |
| BshNI | GGYRCC | 1 cut(s) | 583 |
| BsiEI | CGRYCG | 1 cut(s) | 40 |
| BsiSI | CCGG | 5 cut(s) | 106, 153, 179, 216, 232 |
| BslFI | GGGAC | 1 cut(s) | 627 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 83, 133, 152, 346, 423, 562, 652, 663 |
| BsmAI | GTCTC | 2 cut(s) | 272, 743 |
| BsmBI | CGTCTC | 1 cut(s) | 743 |
| BsmFI | GGGAC | 1 cut(s) | 627 |
| BsnI | GGCC | 4 cut(s) | 39, 235, 656, 698 |
| Bso31I | GGTCTC | 1 cut(s) | 272 |
| Bsp143I | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| BspACI | CCGC | 3 cut(s) | 207, 812, 824 |
| BspANI | GGCC | 4 cut(s) | 39, 235, 656, 698 |
| BspCNI | CTCAG | 3 cut(s) | 104, 412, 753 |
| BspLI | GGNNCC | 3 cut(s) | 88, 350, 585 |
| BspPI | GGATC | 2 cut(s) | 361, 542 |
| BspT107I | GGYRCC | 1 cut(s) | 583 |
| BspTI | CTTAAG | 1 cut(s) | 608 |
| BspTNI | GGTCTC | 1 cut(s) | 272 |
| BsrFI | RCCGGY | 4 cut(s) | 152, 178, 215, 231 |
| BsrI | ACTGG | 1 cut(s) | 268 |
| BssAI | RCCGGY | 4 cut(s) | 152, 178, 215, 231 |
| BssECI | CCNNGG | 2 cut(s) | 82, 132 |
| BssMI | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| BssT1I | CCWWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 1 cut(s) | 597 |
| BstAFI | CTTAAG | 1 cut(s) | 608 |
| BstC8I | GCNNGC | 3 cut(s) | 154, 180, 680 |
| BstDEI | CTNAG | 4 cut(s) | 91, 399, 533, 740 |
| BstF5I | GGATG | 6 cut(s) | 68, 156, 182, 209, 365, 607 |
| BstH2I | RGCGCY | 2 cut(s) | 140, 270 |
| BstHHI | GCGC | 4 cut(s) | 139, 197, 269, 726 |
| BstKTI | GATC | 6 cut(s) | 17, 261, 290, 369, 550, 780 |
| BstMAI | GTCTC | 2 cut(s) | 272, 743 |
| BstMBI | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| BstMCI | CGRYCG | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 449 |
| BstNSI | RCATGY | 1 cut(s) | 721 |
| BstV1I | GCAGC | 1 cut(s) | 256 |
| BstX2I | RGATCY | 1 cut(s) | 287 |
| BstYI | RGATCY | 1 cut(s) | 287 |
| BstZI | CGGCCG | 1 cut(s) | 37 |
| BsuI | GTATCC | 1 cut(s) | 246 |
| BsuRI | GGCC | 4 cut(s) | 39, 235, 656, 698 |
| BtrI | CACGTC | 2 cut(s) | 173, 737 |
| BtsCI | GGATG | 6 cut(s) | 68, 156, 182, 209, 365, 607 |
| BtsI | GCAGTG | 1 cut(s) | 462 |
| BtsIMutI | CAGTG | 3 cut(s) | 261, 462, 668 |
| Cac8I | GCNNGC | 3 cut(s) | 154, 180, 680 |
| CfoI | GCGC | 4 cut(s) | 139, 197, 269, 726 |
| Cfr10I | RCCGGY | 4 cut(s) | 152, 178, 215, 231 |
| Cfr13I | GGNCC | 2 cut(s) | 349, 696 |
| Csp6I | GTAC | 2 cut(s) | 414, 568 |
| CviAII | CATG | 1 cut(s) | 718 |
| CviQI | GTAC | 2 cut(s) | 414, 568 |
| DdeI | CTNAG | 4 cut(s) | 91, 399, 533, 740 |
| DpnI | GATC | 6 cut(s) | 16, 260, 289, 368, 549, 779 |
| DpnII | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| EaeI | YGGCCR | 3 cut(s) | 37, 233, 654 |
| EagI | CGGCCG | 1 cut(s) | 37 |
| EclXI | CGGCCG | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 1 cut(s) | 82 |
| Eco31I | GGTCTC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 1 cut(s) | 349 |
| Eco52I | CGGCCG | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 1 cut(s) | 557 |
| EcoT14I | CCWWGG | 1 cut(s) | 82 |
| ErhI | CCWWGG | 1 cut(s) | 82 |
| Esp3I | CGTCTC | 1 cut(s) | 743 |
| FaeI | CATG | 1 cut(s) | 721 |
| FaiI | YATR | 5 cut(s) | 543, 633, 676, 719, 818 |
| FaqI | GGGAC | 1 cut(s) | 627 |
| FatI | CATG | 1 cut(s) | 717 |
| FauI | CCCGC | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| FokI | GGATG | 6 cut(s) | 55, 143, 169, 196, 372, 614 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| FspBI | CTAG | 4 cut(s) | 114, 552, 821, 829 |
| GlaI | GCGC | 4 cut(s) | 138, 196, 268, 725 |
| GluI | GCNGC | 1 cut(s) | 270 |
| HaeII | RGCGCY | 2 cut(s) | 140, 270 |
| HaeIII | GGCC | 4 cut(s) | 39, 235, 656, 698 |
| HapII | CCGG | 5 cut(s) | 106, 153, 179, 216, 232 |
| HhaI | GCGC | 4 cut(s) | 139, 197, 269, 726 |
| Hin1II | CATG | 1 cut(s) | 721 |
| Hin6I | GCGC | 4 cut(s) | 137, 195, 267, 724 |
| HinP1I | GCGC | 4 cut(s) | 137, 195, 267, 724 |
| HincII | GTYRAC | 1 cut(s) | 97 |
| HindII | GTYRAC | 1 cut(s) | 97 |
| HinfI | GANTC | 6 cut(s) | 42, 53, 59, 343, 397, 787 |
| HpaII | CCGG | 5 cut(s) | 106, 153, 179, 216, 232 |
| HphI | GGTGA | 5 cut(s) | 155, 180, 221, 520, 801 |
| Hpy166II | GTNNAC | 1 cut(s) | 97 |
| Hpy188I | TCNGA | 4 cut(s) | 19, 58, 243, 402 |
| Hpy188III | TCNNGA | 2 cut(s) | 291, 340 |
| Hpy8I | GTNNAC | 1 cut(s) | 97 |
| Hpy99I | CGWCG | 1 cut(s) | 38 |
| HpyAV | CCTTC | 4 cut(s) | 397, 574, 581, 747 |
| HpyCH4III | ACNGT | 1 cut(s) | 597 |
| HpyCH4IV | ACGT | 4 cut(s) | 172, 559, 616, 736 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 449 |
| HpyF3I | CTNAG | 4 cut(s) | 91, 399, 533, 740 |
| HpySE526I | ACGT | 4 cut(s) | 172, 559, 616, 736 |
| Hsp92II | CATG | 1 cut(s) | 721 |
| HspAI | GCGC | 4 cut(s) | 137, 195, 267, 724 |
| KroI | GCCGGC | 2 cut(s) | 152, 178 |
| KroNI | GCCGGC | 2 cut(s) | 154, 180 |
| Kzo9I | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| LmnI | GCTCC | 1 cut(s) | 648 |
| Lsp1109I | GCAGC | 1 cut(s) | 256 |
| LweI | GCATC | 4 cut(s) | 165, 191, 218, 592 |
| MaeI | CTAG | 4 cut(s) | 114, 552, 821, 829 |
| MaeII | ACGT | 4 cut(s) | 172, 559, 616, 736 |
| MalI | GATC | 6 cut(s) | 16, 260, 289, 368, 549, 779 |
| MboI | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| MboII | GAAGA | 8 cut(s) | 54, 57, 317, 320, 323, 339, 384, 779 |
| MflI | RGATCY | 1 cut(s) | 287 |
| MluCI | AATT | 2 cut(s) | 382, 650 |
| MlyI | GAGTC | 3 cut(s) | 36, 391, 781 |
| MmeI | TCCRAC | 1 cut(s) | 394 |
| MnlI | CCTC | 6 cut(s) | 41, 59, 100, 142, 153, 196 |
| MroNI | GCCGGC | 2 cut(s) | 152, 178 |
| MseI | TTAA | 2 cut(s) | 524, 609 |
| MspCI | CTTAAG | 1 cut(s) | 608 |
| MspI | CCGG | 5 cut(s) | 106, 153, 179, 216, 232 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 449 |
| NaeI | GCCGGC | 2 cut(s) | 154, 180 |
| NdeII | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| NgoMIV | GCCGGC | 2 cut(s) | 152, 178 |
| NlaIII | CATG | 1 cut(s) | 721 |
| NlaIV | GGNNCC | 3 cut(s) | 88, 350, 585 |
| NmeAIII | GCCGAG | 1 cut(s) | 113 |
| NspI | RCATGY | 1 cut(s) | 721 |
| PciI | ACATGT | 1 cut(s) | 717 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 42 |
| PdiI | GCCGGC | 2 cut(s) | 154, 180 |
| PfeI | GAWTC | 3 cut(s) | 53, 59, 343 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| PleI | GAGTC | 3 cut(s) | 36, 391, 781 |
| PpsI | GAGTC | 3 cut(s) | 36, 391, 781 |
| PscI | ACATGT | 1 cut(s) | 717 |
| PspN4I | GGNNCC | 3 cut(s) | 88, 350, 585 |
| PspPI | GGNCC | 2 cut(s) | 349, 696 |
| PsuI | RGATCY | 1 cut(s) | 287 |
| RsaI | GTAC | 2 cut(s) | 415, 569 |
| RsaNI | GTAC | 2 cut(s) | 414, 568 |
| SaqAI | TTAA | 2 cut(s) | 524, 609 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau3AI | GATC | 6 cut(s) | 14, 258, 287, 366, 547, 777 |
| Sau96I | GGNCC | 2 cut(s) | 349, 696 |
| SchI | GAGTC | 3 cut(s) | 36, 391, 781 |
| SfaNI | GCATC | 4 cut(s) | 165, 191, 218, 592 |
| SinI | GGWCC | 1 cut(s) | 349 |
| SmlI | CTYRAG | 3 cut(s) | 275, 409, 608 |
| SmoI | CTYRAG | 3 cut(s) | 275, 409, 608 |
| Sse9I | AATT | 2 cut(s) | 382, 650 |
| SsiI | CCGC | 3 cut(s) | 207, 812, 824 |
| SspI | AATATT | 1 cut(s) | 637 |
| SspMI | CTAG | 4 cut(s) | 114, 552, 821, 829 |
| StyI | CCWWGG | 1 cut(s) | 82 |
| TaaI | ACNGT | 1 cut(s) | 597 |
| TaiI | ACGT | 4 cut(s) | 175, 562, 619, 739 |
| TaqI | TCGA | 6 cut(s) | 33, 45, 51, 292, 375, 395 |
| TasI | AATT | 2 cut(s) | 382, 650 |
| TfiI | GAWTC | 3 cut(s) | 53, 59, 343 |
| Tru1I | TTAA | 2 cut(s) | 524, 609 |
| Tru9I | TTAA | 2 cut(s) | 524, 609 |
| TscAI | CASTG | 3 cut(s) | 268, 469, 668 |
| TseI | GCWGC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 2 cut(s) | 57, 620 |
| TspGWI | ACGGA | 1 cut(s) | 135 |
| TspRI | CASTG | 3 cut(s) | 268, 469, 668 |
| Vha464I | CTTAAG | 1 cut(s) | 608 |
| VpaK11BI | GGWCC | 1 cut(s) | 349 |
| XapI | RAATTY | 1 cut(s) | 382 |
| XceI | RCATGY | 1 cut(s) | 721 |
| XspI | CTAG | 4 cut(s) | 114, 552, 821, 829 |