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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 165 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 548 |
| AccB1I | GGYRCC | 2 cut(s) | 587, 621 |
| AclWI | GGATC | 3 cut(s) | 17, 247, 497 |
| AcsI | RAATTY | 2 cut(s) | 217, 432 |
| AcuI | CTGAAG | 3 cut(s) | 32, 267, 620 |
| AcvI | CACGTG | 1 cut(s) | 532 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 532 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 37, 138 |
| AflII | CTTAAG | 1 cut(s) | 83 |
| AflIII | ACRYGT | 1 cut(s) | 496 |
| AgsI | TTSAA | 4 cut(s) | 55, 184, 346, 400 |
| AjiI | CACGTC | 3 cut(s) | 212, 497, 544 |
| AjnI | CCWGG | 1 cut(s) | 410 |
| AluBI | AGCT | 1 cut(s) | 352 |
| AluI | AGCT | 1 cut(s) | 352 |
| Alw26I | GTCTC | 1 cut(s) | 7 |
| AlwI | GGATC | 3 cut(s) | 17, 247, 497 |
| Ama87I | CYCGRG | 1 cut(s) | 437 |
| AoxI | GGCC | 3 cut(s) | 413, 561, 570 |
| ApoI | RAATTY | 2 cut(s) | 217, 432 |
| AspLEI | GCGC | 2 cut(s) | 201, 590 |
| AspS9I | GGNCC | 2 cut(s) | 561, 571 |
| AvaI | CYCGRG | 1 cut(s) | 437 |
| BaeGI | GKGCMC | 1 cut(s) | 624 |
| BanI | GGYRCC | 2 cut(s) | 587, 621 |
| BauI | CACGAG | 1 cut(s) | 513 |
| BbrPI | CACGTG | 1 cut(s) | 532 |
| BbsI | GAAGAC | 2 cut(s) | 62, 266 |
| BccI | CCATC | 1 cut(s) | 589 |
| BceAI | ACGGC | 1 cut(s) | 548 |
| BciT130I | CCWGG | 1 cut(s) | 412 |
| BcoDI | GTCTC | 1 cut(s) | 7 |
| BfaI | CTAG | 3 cut(s) | 27, 296, 314 |
| BfmI | CTRYAG | 1 cut(s) | 672 |
| BfoI | RGCGCY | 1 cut(s) | 591 |
| BfrI | CTTAAG | 1 cut(s) | 83 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 569 |
| Bme1390I | CCNGG | 1 cut(s) | 412 |
| BmeT110I | CYCGRG | 1 cut(s) | 437 |
| BmgBI | CACGTC | 3 cut(s) | 212, 497, 544 |
| BmgT120I | GGNCC | 2 cut(s) | 561, 571 |
| BmiI | GGNNCC | 2 cut(s) | 589, 623 |
| BmrFI | CCNGG | 1 cut(s) | 412 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BpiI | GAAGAC | 2 cut(s) | 62, 266 |
| BpuEI | CTTGAG | 1 cut(s) | 188 |
| BsaAI | YACGTR | 1 cut(s) | 532 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaJI | CCNNGG | 2 cut(s) | 438, 564 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 37, 138 |
| Bse1I | ACTGG | 1 cut(s) | 304 |
| Bse3DI | GCAATG | 1 cut(s) | 666 |
| BseBI | CCWGG | 1 cut(s) | 412 |
| BseDI | CCNNGG | 2 cut(s) | 438, 564 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 37, 138 |
| BseMI | GCAATG | 1 cut(s) | 666 |
| BseNI | ACTGG | 1 cut(s) | 304 |
| BseSI | GKGCMC | 1 cut(s) | 624 |
| BshFI | GGCC | 3 cut(s) | 415, 563, 572 |
| BshNI | GGYRCC | 2 cut(s) | 587, 621 |
| BsiHKCI | CYCGRG | 1 cut(s) | 437 |
| BslFI | GGGAC | 3 cut(s) | 102, 436, 554 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 37, 138 |
| BsmAI | GTCTC | 1 cut(s) | 7 |
| BsmFI | GGGAC | 3 cut(s) | 102, 436, 554 |
| BsnI | GGCC | 3 cut(s) | 415, 563, 572 |
| BsoBI | CYCGRG | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 1 cut(s) | 624 |
| Bsp143I | GATC | 3 cut(s) | 22, 252, 502 |
| BspANI | GGCC | 3 cut(s) | 415, 563, 572 |
| BspLI | GGNNCC | 2 cut(s) | 589, 623 |
| BspPI | GGATC | 3 cut(s) | 17, 247, 497 |
| BspT107I | GGYRCC | 2 cut(s) | 587, 621 |
| BspTI | CTTAAG | 1 cut(s) | 83 |
| BsrDI | GCAATG | 1 cut(s) | 666 |
| BsrI | ACTGG | 1 cut(s) | 304 |
| BssECI | CCNNGG | 2 cut(s) | 438, 564 |
| BssMI | GATC | 3 cut(s) | 22, 252, 502 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssSI | CACGAG | 1 cut(s) | 513 |
| Bst2BI | CACGAG | 1 cut(s) | 513 |
| Bst2UI | CCWGG | 1 cut(s) | 412 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 133 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstAFI | CTTAAG | 1 cut(s) | 83 |
| BstBAI | YACGTR | 1 cut(s) | 532 |
| BstDEI | CTNAG | 1 cut(s) | 626 |
| BstDSI | CCRYGG | 1 cut(s) | 564 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstH2I | RGCGCY | 1 cut(s) | 591 |
| BstHHI | GCGC | 2 cut(s) | 201, 590 |
| BstKTI | GATC | 3 cut(s) | 25, 255, 505 |
| BstMAI | GTCTC | 1 cut(s) | 7 |
| BstMBI | GATC | 3 cut(s) | 22, 252, 502 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 569 |
| BstNI | CCWGG | 1 cut(s) | 412 |
| BstSCI | CCNGG | 1 cut(s) | 410 |
| BstSFI | CTRYAG | 1 cut(s) | 672 |
| BstSLI | GKGCMC | 1 cut(s) | 624 |
| BstV2I | GAAGAC | 2 cut(s) | 62, 266 |
| BsuRI | GGCC | 3 cut(s) | 415, 563, 572 |
| BtgI | CCRYGG | 1 cut(s) | 564 |
| BtrI | CACGTC | 3 cut(s) | 212, 497, 544 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 143 |
| CfoI | GCGC | 2 cut(s) | 201, 590 |
| Cfr13I | GGNCC | 2 cut(s) | 561, 571 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 525, 560 |
| CviAII | CATG | 2 cut(s) | 601, 668 |
| CviJI | RGCY | 8 cut(s) | 30, 313, 352, 374, 415, 443, 563, 572 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 313, 352, 374, 415, 443, 563, 572 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DdeI | CTNAG | 1 cut(s) | 626 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 3 cut(s) | 24, 254, 504 |
| DpnII | GATC | 3 cut(s) | 22, 252, 502 |
| DraIII | CACNNNGTG | 1 cut(s) | 532 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 548 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 548 |
| Eco147I | AGGCCT | 1 cut(s) | 415 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 267, 620 |
| Eco72I | CACGTG | 1 cut(s) | 532 |
| Eco88I | CYCGRG | 1 cut(s) | 437 |
| EcoO109I | RGGNCCY | 1 cut(s) | 571 |
| EcoRII | CCWGG | 1 cut(s) | 410 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| FaeI | CATG | 2 cut(s) | 604, 671 |
| FaqI | GGGAC | 3 cut(s) | 102, 436, 554 |
| FatI | CATG | 2 cut(s) | 600, 667 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 3 cut(s) | 27, 296, 314 |
| GlaI | GCGC | 2 cut(s) | 200, 589 |
| HaeII | RGCGCY | 1 cut(s) | 591 |
| HaeIII | GGCC | 3 cut(s) | 415, 563, 572 |
| HhaI | GCGC | 2 cut(s) | 201, 590 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 2 cut(s) | 604, 671 |
| Hin6I | GCGC | 2 cut(s) | 199, 588 |
| HinP1I | GCGC | 2 cut(s) | 199, 588 |
| HinfI | GANTC | 2 cut(s) | 262, 391 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 3 cut(s) | 256, 437, 553 |
| HpyAV | CCTTC | 2 cut(s) | 56, 644 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 133 |
| HpyCH4IV | ACGT | 5 cut(s) | 91, 211, 496, 531, 543 |
| HpyCH4V | TGCA | 5 cut(s) | 367, 482, 518, 526, 615 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 569 |
| HpyF3I | CTNAG | 1 cut(s) | 626 |
| HpySE526I | ACGT | 5 cut(s) | 91, 211, 496, 531, 543 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 2 cut(s) | 604, 671 |
| HspAI | GCGC | 2 cut(s) | 199, 588 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| Kzo9I | GATC | 3 cut(s) | 22, 252, 502 |
| LmnI | GCTCC | 1 cut(s) | 123 |
| LpnPI | CCDG | 7 cut(s) | 135, 269, 317, 397, 424, 429, 631 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeI | CTAG | 3 cut(s) | 27, 296, 314 |
| MaeII | ACGT | 5 cut(s) | 91, 211, 496, 531, 543 |
| MalI | GATC | 3 cut(s) | 24, 254, 504 |
| MboI | GATC | 3 cut(s) | 22, 252, 502 |
| MboII | GAAGA | 3 cut(s) | 67, 254, 271 |
| MhlI | GDGCHC | 1 cut(s) | 624 |
| MluCI | AATT | 4 cut(s) | 217, 288, 432, 445 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MmeI | TCCRAC | 1 cut(s) | 472 |
| MnlI | CCTC | 5 cut(s) | 212, 433, 522, 562, 584 |
| MseI | TTAA | 1 cut(s) | 84 |
| MspCI | CTTAAG | 1 cut(s) | 83 |
| MspR9I | CCNGG | 1 cut(s) | 412 |
| MvaI | CCWGG | 1 cut(s) | 412 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 569 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NdeII | GATC | 3 cut(s) | 22, 252, 502 |
| NlaIII | CATG | 2 cut(s) | 604, 671 |
| NlaIV | GGNNCC | 2 cut(s) | 589, 623 |
| NmeAIII | GCCGAG | 1 cut(s) | 616 |
| PceI | AGGCCT | 1 cut(s) | 415 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 549 |
| PfeI | GAWTC | 1 cut(s) | 391 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PmaCI | CACGTG | 1 cut(s) | 532 |
| PmlI | CACGTG | 1 cut(s) | 532 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| Ppu21I | YACGTR | 1 cut(s) | 532 |
| PsiI | TTATAA | 1 cut(s) | 165 |
| Psp6I | CCWGG | 1 cut(s) | 410 |
| PspCI | CACGTG | 1 cut(s) | 532 |
| PspGI | CCWGG | 1 cut(s) | 410 |
| PspN4I | GGNNCC | 2 cut(s) | 589, 623 |
| PspPI | GGNCC | 2 cut(s) | 561, 571 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| Sau3AI | GATC | 3 cut(s) | 22, 252, 502 |
| Sau96I | GGNCC | 2 cut(s) | 561, 571 |
| SchI | GAGTC | 1 cut(s) | 256 |
| ScrFI | CCNGG | 1 cut(s) | 412 |
| SduI | GDGCHC | 1 cut(s) | 624 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SfcI | CTRYAG | 1 cut(s) | 672 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 569 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| SmlI | CTYRAG | 2 cut(s) | 83, 203 |
| SmoI | CTYRAG | 2 cut(s) | 83, 203 |
| Sse9I | AATT | 4 cut(s) | 217, 288, 432, 445 |
| SseBI | AGGCCT | 1 cut(s) | 415 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 3 cut(s) | 27, 296, 314 |
| StuI | AGGCCT | 1 cut(s) | 415 |
| StyD4I | CCNGG | 1 cut(s) | 410 |
| TaaI | ACNGT | 2 cut(s) | 72, 133 |
| TaiI | ACGT | 5 cut(s) | 94, 214, 499, 534, 546 |
| TasI | AATT | 4 cut(s) | 217, 288, 432, 445 |
| TfiI | GAWTC | 1 cut(s) | 391 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 143 |
| TspDTI | ATGAA | 3 cut(s) | 95, 159, 246 |
| TspGWI | ACGGA | 1 cut(s) | 140 |
| TspRI | CASTG | 1 cut(s) | 143 |
| Vha464I | CTTAAG | 1 cut(s) | 83 |
| XapI | RAATTY | 2 cut(s) | 217, 432 |
| XspI | CTAG | 3 cut(s) | 27, 296, 314 |