Rmu_sc0002349.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002349.1
OG0000014
Physical Location & Seq
Reverse (-)
77286 .. 77971
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002349.1_g000023.1.cds

Sequence Viewer

Length: 558 bp
atggcttatccaactcaacctgaatttgacattttggactcagaaggacttgagtaccaccgttgggtttctgatgtagatactgcctttgtggcaaaagactacactgccaccattaccgaccccaaagatgatgaaccatctaataagttgaatgaaatccacttgcttgactacaaaagggtcaatgacttcaacaacatgttgcgcctgaaggcacgtctaaatttctgtggaaaggaactcacagaagatgatatgattcagaagactctttccacttttcctacttcaacaattatgctagcgaaccagtataggttggagtatgacaacaaaagaatcacaaccttcaataagctgatcaacctactgcaagtggctgagaggcataataaggttcttttgagcatcaatgccaggcctgtcgggataaagaaaattcccgagactaattatggcaaagtaaaaggtggaaagaacctcaatgcaaatggggttggacgtgctgatccctactcacgtggtatgagccgtggaggccctcccaatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

8.54

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000014)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26151 FvH4_2g03832 FvH4_3g14381 FvH4_3g36310 FvH4_4g03324 FvH4_4g13931 FvH4_4g13991 FvH4_4g21832 FvH4_5g23602 FvH4_5g28592 FvH4_6g20101 FvH4_6g39333 FvH4_6g44543 FvH4_7g01912 FvH4_7g03871 FvH4_7g13221
rosa_chinensis RchiOBHm_Chr1g0352481 RchiOBHm_Chr2g0094711 RchiOBHm_Chr3g0463131 RchiOBHm_Chr6g0266441
rosa_multiflora Rmu_co7985570.1_g000001 Rmu_co7989700.1_g000001 Rmu_co8078240.1_g000001 Rmu_co8151186.1_g000001 Rmu_co8171032.1_g000001 Rmu_co8187528.1_g000001 Rmu_co8212542.1_g000001 Rmu_co8215704.1_g000001 Rmu_co8229975.1_g000001 Rmu_co8304281.1_g000001 Rmu_co8342199.1_g000001 Rmu_co8350629.1_g000001 Rmu_co8425511.1_g000001 Rmu_co8504337.1_g000002 Rmu_sc0000008.1_g000001 Rmu_sc0000030.1_g000038 Rmu_sc0000041.1_g000023 Rmu_sc0000063.1_g000022 Rmu_sc0000076.1_g000002 Rmu_sc0000103.1_g000049 Rmu_sc0000117.1_g000035 Rmu_sc0000144.1_g000049 Rmu_sc0000147.1_g000064 Rmu_sc0000148.1_g000050 Rmu_sc0000148.1_g000062 Rmu_sc0000149.1_g000012 Rmu_sc0000159.1_g000002 Rmu_sc0000167.1_g000003 Rmu_sc0000178.1_g000012 Rmu_sc0000199.1_g000009 Rmu_sc0000215.1_g000002 Rmu_sc0000234.1_g000004 Rmu_sc0000235.1_g000058 Rmu_sc0000239.1_g000040 Rmu_sc0000245.1_g000008 Rmu_sc0000288.1_g000047 Rmu_sc0000305.1_g000009 Rmu_sc0000335.1_g000062 Rmu_sc0000335.1_g000063 Rmu_sc0000360.1_g000041 Rmu_sc0000365.1_g000029 Rmu_sc0000366.1_g000044 Rmu_sc0000367.1_g000215 Rmu_sc0000382.1_g000019 Rmu_sc0000388.1_g000065 Rmu_sc0000399.1_g000021 Rmu_sc0000420.1_g000024 Rmu_sc0000429.1_g000026 Rmu_sc0000441.1_g000009 Rmu_sc0000461.1_g000023 Rmu_sc0000484.1_g000002 Rmu_sc0000487.1_g000072 Rmu_sc0000489.1_g000006 Rmu_sc0000493.1_g000056 Rmu_sc0000516.1_g000015 Rmu_sc0000516.1_g000069 Rmu_sc0000533.1_g000036 Rmu_sc0000535.1_g000013 Rmu_sc0000538.1_g000046 Rmu_sc0000543.1_g000056 Rmu_sc0000596.1_g000056 Rmu_sc0000605.1_g000013 Rmu_sc0000651.1_g000001 Rmu_sc0000689.1_g000022 Rmu_sc0000696.1_g000012 Rmu_sc0000704.1_g000032 Rmu_sc0000730.1_g000020 Rmu_sc0000744.1_g000013 Rmu_sc0000744.1_g000020 Rmu_sc0000744.1_g000165 Rmu_sc0000750.1_g000004 Rmu_sc0000753.1_g000035 Rmu_sc0000770.1_g000047 Rmu_sc0000774.1_g000009 Rmu_sc0000775.1_g000019 Rmu_sc0000780.1_g000008 Rmu_sc0000791.1_g000052 Rmu_sc0000792.1_g000011 Rmu_sc0000795.1_g000009 Rmu_sc0000796.1_g000032 Rmu_sc0000805.1_g000045 Rmu_sc0000806.1_g000013 Rmu_sc0000806.1_g000023 Rmu_sc0000813.1_g000005 Rmu_sc0000820.1_g000014 Rmu_sc0000834.1_g000001 Rmu_sc0000834.1_g000013 Rmu_sc0000837.1_g000076 Rmu_sc0000847.1_g000025 Rmu_sc0000851.1_g000011 Rmu_sc0000857.1_g000037 Rmu_sc0000857.1_g000048 Rmu_sc0000857.1_g000049 Rmu_sc0000911.1_g000006 Rmu_sc0000920.1_g000010 Rmu_sc0000924.1_g000006 Rmu_sc0000962.1_g000029 Rmu_sc0000989.1_g000001 Rmu_sc0001011.1_g000005 Rmu_sc0001011.1_g000006 Rmu_sc0001017.1_g000011 Rmu_sc0001017.1_g000012 Rmu_sc0001017.1_g000015 Rmu_sc0001051.1_g000036 Rmu_sc0001053.1_g000002 Rmu_sc0001059.1_g000017 Rmu_sc0001067.1_g000004 Rmu_sc0001124.1_g000018 Rmu_sc0001124.1_g000022 Rmu_sc0001159.1_g000037 Rmu_sc0001159.1_g000038 Rmu_sc0001167.1_g000062 Rmu_sc0001167.1_g000063 Rmu_sc0001179.1_g000043 Rmu_sc0001195.1_g000024 Rmu_sc0001207.1_g000010 Rmu_sc0001207.1_g000046 Rmu_sc0001218.1_g000034 Rmu_sc0001227.1_g000034 Rmu_sc0001244.1_g000016 Rmu_sc0001262.1_g000007 Rmu_sc0001291.1_g000030 Rmu_sc0001298.1_g000023 Rmu_sc0001298.1_g000031 Rmu_sc0001301.1_g000007 Rmu_sc0001304.1_g000012 Rmu_sc0001304.1_g000013 Rmu_sc0001336.1_g000010 Rmu_sc0001336.1_g000034 Rmu_sc0001353.1_g000027 Rmu_sc0001425.1_g000020 Rmu_sc0001430.1_g000002 Rmu_sc0001433.1_g000006 Rmu_sc0001443.1_g000009 Rmu_sc0001468.1_g000019 Rmu_sc0001493.1_g000079 Rmu_sc0001493.1_g000080 Rmu_sc0001516.1_g000059 Rmu_sc0001524.1_g000019 Rmu_sc0001524.1_g000064 Rmu_sc0001524.1_g000065 Rmu_sc0001552.1_g000002 Rmu_sc0001552.1_g000031 Rmu_sc0001605.1_g000008 Rmu_sc0001623.1_g000010 Rmu_sc0001626.1_g000039 Rmu_sc0001631.1_g000026 Rmu_sc0001636.1_g000010 Rmu_sc0001649.1_g000003 Rmu_sc0001662.1_g000006 Rmu_sc0001694.1_g000055 Rmu_sc0001698.1_g000007 Rmu_sc0001702.1_g000019 Rmu_sc0001702.1_g000022 Rmu_sc0001721.1_g000008 Rmu_sc0001742.1_g000008 Rmu_sc0001755.1_g000034 Rmu_sc0001759.1_g000014 Rmu_sc0001772.1_g000055 Rmu_sc0001822.1_g000019 Rmu_sc0001824.1_g000002 Rmu_sc0001849.1_g000017 Rmu_sc0001852.1_g000015 Rmu_sc0001855.1_g000003 Rmu_sc0001855.1_g000024 Rmu_sc0001860.1_g000019 Rmu_sc0001861.1_g000087 Rmu_sc0001861.1_g000088 Rmu_sc0001863.1_g000021 Rmu_sc0001870.1_g000011 Rmu_sc0001870.1_g000016 Rmu_sc0001872.1_g000002 Rmu_sc0001880.1_g000039 Rmu_sc0001896.1_g000020 Rmu_sc0001962.1_g000041 Rmu_sc0001966.1_g000028 Rmu_sc0001992.1_g000003 Rmu_sc0002016.1_g000012 Rmu_sc0002016.1_g000044 Rmu_sc0002038.1_g000012 Rmu_sc0002040.1_g000076 Rmu_sc0002041.1_g000008 Rmu_sc0002107.1_g000003 Rmu_sc0002130.1_g000008 Rmu_sc0002132.1_g000037 Rmu_sc0002170.1_g000048 Rmu_sc0002205.1_g000054 Rmu_sc0002207.1_g000013 Rmu_sc0002230.1_g000022 Rmu_sc0002235.1_g000033 Rmu_sc0002248.1_g000041 Rmu_sc0002260.1_g000018 Rmu_sc0002266.1_g000024 Rmu_sc0002283.1_g000058 Rmu_sc0002292.1_g000009 Rmu_sc0002332.1_g000008 Rmu_sc0002349.1_g000023 Rmu_sc0002372.1_g000037 Rmu_sc0002401.1_g000022 Rmu_sc0002451.1_g000037 Rmu_sc0002460.1_g000045 Rmu_sc0002460.1_g000063 Rmu_sc0002506.1_g000020 Rmu_sc0002509.1_g000016 Rmu_sc0002522.1_g000018 Rmu_sc0002522.1_g000019 Rmu_sc0002525.1_g000005 Rmu_sc0002539.1_g000104 Rmu_sc0002548.1_g000010 Rmu_sc0002563.1_g000034 Rmu_sc0002571.1_g000002 Rmu_sc0002586.1_g000018 Rmu_sc0002658.1_g000034 Rmu_sc0002672.1_g000002 Rmu_sc0002672.1_g000003 Rmu_sc0002672.1_g000004 Rmu_sc0002685.1_g000006 Rmu_sc0002687.1_g000011 Rmu_sc0002699.1_g000021 Rmu_sc0002701.1_g000055 Rmu_sc0002736.1_g000005 Rmu_sc0002741.1_g000014 Rmu_sc0002808.1_g000011 Rmu_sc0002852.1_g000006 Rmu_sc0002855.1_g000001 Rmu_sc0002868.1_g000032 Rmu_sc0002877.1_g000022 Rmu_sc0002907.1_g000007 Rmu_sc0002908.1_g000002 Rmu_sc0002917.1_g000002 Rmu_sc0002927.1_g000011 Rmu_sc0002942.1_g000013 Rmu_sc0002995.1_g000021 Rmu_sc0003002.1_g000063 Rmu_sc0003032.1_g000017 Rmu_sc0003035.1_g000001 Rmu_sc0003040.1_g000015 Rmu_sc0003110.1_g000013 Rmu_sc0003158.1_g000008 Rmu_sc0003180.1_g000010 Rmu_sc0003207.1_g000035 Rmu_sc0003214.1_g000006 Rmu_sc0003221.1_g000085 Rmu_sc0003222.1_g000011 Rmu_sc0003233.1_g000016 Rmu_sc0003233.1_g000017 Rmu_sc0003233.1_g000037 Rmu_sc0003279.1_g000010 Rmu_sc0003282.1_g000003 Rmu_sc0003291.1_g000024 Rmu_sc0003317.1_g000009 Rmu_sc0003419.1_g000015 Rmu_sc0003441.1_g000052 Rmu_sc0003448.1_g000001 Rmu_sc0003456.1_g000012 Rmu_sc0003499.1_g000015 Rmu_sc0003500.1_g000030 Rmu_sc0003588.1_g000012 Rmu_sc0003588.1_g000013 Rmu_sc0003600.1_g000003 Rmu_sc0003601.1_g000007 Rmu_sc0003627.1_g000002 Rmu_sc0003629.1_g000047 Rmu_sc0003673.1_g000028 Rmu_sc0003690.1_g000013 Rmu_sc0003708.1_g000001 Rmu_sc0003711.1_g000019 Rmu_sc0003758.1_g000005 Rmu_sc0003767.1_g000025 Rmu_sc0003832.1_g000036 Rmu_sc0003882.1_g000056 Rmu_sc0003981.1_g000019 Rmu_sc0003991.1_g000006 Rmu_sc0004045.1_g000013 Rmu_sc0004076.1_g000030 Rmu_sc0004126.1_g000006 Rmu_sc0004154.1_g000002 Rmu_sc0004193.1_g000015 Rmu_sc0004275.1_g000023 Rmu_sc0004311.1_g000027 Rmu_sc0004362.1_g000011 Rmu_sc0004380.1_g000011 Rmu_sc0004432.1_g000013 Rmu_sc0004478.1_g000001 Rmu_sc0004520.1_g000018 Rmu_sc0004602.1_g000034 Rmu_sc0004614.1_g000011 Rmu_sc0004638.1_g000026 Rmu_sc0004655.1_g000013 Rmu_sc0004657.1_g000056 Rmu_sc0004657.1_g000057 Rmu_sc0004705.1_g000032 Rmu_sc0004736.1_g000004 Rmu_sc0004742.1_g000006 Rmu_sc0004849.1_g000009 Rmu_sc0004876.1_g000041 Rmu_sc0004888.1_g000061 Rmu_sc0004890.1_g000014 Rmu_sc0004927.1_g000028 Rmu_sc0004928.1_g000024 Rmu_sc0004959.1_g000008 Rmu_sc0004959.1_g000009 Rmu_sc0004964.1_g000022 Rmu_sc0004969.1_g000012 Rmu_sc0004969.1_g000013 Rmu_sc0005010.1_g000016 Rmu_sc0005016.1_g000020 Rmu_sc0005047.1_g000009 Rmu_sc0005063.1_g000023 Rmu_sc0005065.1_g000020 Rmu_sc0005093.1_g000015 Rmu_sc0005124.1_g000013 Rmu_sc0005125.1_g000036 Rmu_sc0005129.1_g000014 Rmu_sc0005142.1_g000024 Rmu_sc0005220.1_g000036 Rmu_sc0005234.1_g000007 Rmu_sc0005237.1_g000016 Rmu_sc0005251.1_g000009 Rmu_sc0005251.1_g000014 Rmu_sc0005255.1_g000032 Rmu_sc0005278.1_g000008 Rmu_sc0005292.1_g000038 Rmu_sc0005292.1_g000039 Rmu_sc0005307.1_g000027 Rmu_sc0005309.1_g000008 Rmu_sc0005350.1_g000013 Rmu_sc0005376.1_g000007 Rmu_sc0005378.1_g000038 Rmu_sc0005378.1_g000044 Rmu_sc0005378.1_g000048 Rmu_sc0005378.1_g000049 Rmu_sc0005446.1_g000029 Rmu_sc0005566.1_g000005 Rmu_sc0005571.1_g000012 Rmu_sc0005639.1_g000021 Rmu_sc0005657.1_g000049 Rmu_sc0005657.1_g000065 Rmu_sc0005659.1_g000001 Rmu_sc0005659.1_g000037 Rmu_sc0005697.1_g000026 Rmu_sc0005781.1_g000033 Rmu_sc0005791.1_g000008 Rmu_sc0005806.1_g000002 Rmu_sc0005836.1_g000003 Rmu_sc0005856.1_g000017 Rmu_sc0005930.1_g000001 Rmu_sc0005935.1_g000001 Rmu_sc0006016.1_g000003 Rmu_sc0006016.1_g000004 Rmu_sc0006112.1_g000010 Rmu_sc0006153.1_g000058 Rmu_sc0006176.1_g000008 Rmu_sc0006313.1_g000015 Rmu_sc0006325.1_g000015 Rmu_sc0006326.1_g000038 Rmu_sc0006336.1_g000006 Rmu_sc0006400.1_g000004 Rmu_sc0006416.1_g000009 Rmu_sc0006464.1_g000004 Rmu_sc0006529.1_g000001 Rmu_sc0006561.1_g000037 Rmu_sc0006583.1_g000025 Rmu_sc0006594.1_g000014 Rmu_sc0006658.1_g000001 Rmu_sc0006662.1_g000015 Rmu_sc0006736.1_g000034 Rmu_sc0006758.1_g000018 Rmu_sc0006758.1_g000019 Rmu_sc0006838.1_g000010 Rmu_sc0006838.1_g000011 Rmu_sc0006888.1_g000054 Rmu_sc0006981.1_g000006 Rmu_sc0007026.1_g000001 Rmu_sc0007075.1_g000014 Rmu_sc0007490.1_g000025 Rmu_sc0007503.1_g000001 Rmu_sc0007503.1_g000008 Rmu_sc0007605.1_g000002 Rmu_sc0007727.1_g000029 Rmu_sc0007740.1_g000002 Rmu_sc0007777.1_g000016 Rmu_sc0007785.1_g000011 Rmu_sc0007848.1_g000014 Rmu_sc0007899.1_g000003 Rmu_sc0007991.1_g000001 Rmu_sc0007991.1_g000019 Rmu_sc0008060.1_g000001 Rmu_sc0008105.1_g000005 Rmu_sc0008123.1_g000001 Rmu_sc0008148.1_g000066 Rmu_sc0008225.1_g000001 Rmu_sc0008284.1_g000003 Rmu_sc0008329.1_g000001 Rmu_sc0008411.1_g000002 Rmu_sc0008411.1_g000003 Rmu_sc0008416.1_g000001 Rmu_sc0008477.1_g000012 Rmu_sc0008532.1_g000003 Rmu_sc0008582.1_g000002 Rmu_sc0008775.1_g000004 Rmu_sc0008839.1_g000014 Rmu_sc0008922.1_g000007 Rmu_sc0009103.1_g000001 Rmu_sc0009227.1_g000005 Rmu_sc0009479.1_g000001 Rmu_sc0009555.1_g000009 Rmu_sc0009618.1_g000003 Rmu_sc0009644.1_g000007 Rmu_sc0009644.1_g000010 Rmu_sc0009747.1_g000002 Rmu_sc0009760.1_g000001 Rmu_sc0009806.1_g000010 Rmu_sc0009806.1_g000011 Rmu_sc0009819.1_g000001 Rmu_sc0009857.1_g000001 Rmu_sc0009880.1_g000010 Rmu_sc0009907.1_g000014 Rmu_sc0010160.1_g000002 Rmu_sc0010266.1_g000003 Rmu_sc0010292.1_g000002 Rmu_sc0010292.1_g000003 Rmu_sc0010300.1_g000001 Rmu_sc0010328.1_g000004 Rmu_sc0010347.1_g000001 Rmu_sc0010351.1_g000005 Rmu_sc0010461.1_g000003 Rmu_sc0010521.1_g000006 Rmu_sc0010554.1_g000006 Rmu_sc0010554.1_g000007 Rmu_sc0010606.1_g000006 Rmu_sc0010628.1_g000002 Rmu_sc0010640.1_g000010 Rmu_sc0010824.1_g000002 Rmu_sc0011028.1_g000017 Rmu_sc0011050.1_g000006 Rmu_sc0011115.1_g000009 Rmu_sc0011314.1_g000003 Rmu_sc0011406.1_g000001 Rmu_sc0011421.1_g000002 Rmu_sc0011662.1_g000002 Rmu_sc0011707.1_g000001 Rmu_sc0011720.1_g000001 Rmu_sc0012005.1_g000017 Rmu_sc0012006.1_g000002 Rmu_sc0012014.1_g000001 Rmu_sc0012140.1_g000010 Rmu_sc0012283.1_g000004 Rmu_sc0012283.1_g000005 Rmu_sc0012582.1_g000003 Rmu_sc0013013.1_g000001 Rmu_sc0013025.1_g000002 Rmu_sc0013205.1_g000004 Rmu_sc0013539.1_g000001 Rmu_sc0013688.1_g000001 Rmu_sc0013708.1_g000001 Rmu_sc0013859.1_g000001 Rmu_sc0013927.1_g000006 Rmu_sc0014441.1_g000001 Rmu_sc0014500.1_g000004 Rmu_sc0014637.1_g000001 Rmu_sc0014701.1_g000001 Rmu_sc0014782.1_g000010 Rmu_sc0014879.1_g000001 Rmu_sc0014906.1_g000001 Rmu_sc0014906.1_g000002 Rmu_sc0014987.1_g000003 Rmu_sc0017207.1_g000004 Rmu_sc0017446.1_g000001 Rmu_sc0017565.1_g000001 Rmu_sc0017853.1_g000001 Rmu_sc0017946.1_g000002 Rmu_sc0018443.1_g000001 Rmu_sc0019490.1_g000004 Rmu_sc0019761.1_g000001 Rmu_sc0020011.1_g000001 Rmu_sc0020028.1_g000001 Rmu_sc0020050.1_g000001 Rmu_sc0020198.1_g000001 Rmu_sc0020363.1_g000001 Rmu_sc0020525.1_g000001 Rmu_sc0020563.1_g000001 Rmu_sc0020901.1_g000001 Rmu_sc0021320.1_g000002 Rmu_sc0021640.1_g000001 Rmu_sc0021847.1_g000001 Rmu_sc0022221.1_g000005 Rmu_sc0022894.1_g000001 Rmu_sc0025777.1_g000001 Rmu_sc0027044.1_g000001 Rmu_sc0027150.1_g000001 Rmu_sc0027506.1_g000008 Rmu_sc0027628.1_g000001 Rmu_sc0027803.1_g000001 Rmu_sc0028353.1_g000001 Rmu_sc0030152.1_g000001 Rmu_sc0031284.1_g000001 Rmu_sc0031960.1_g000002 Rmu_sc0031983.1_g000001 Rmu_sc0032559.1_g000001 Rmu_sc0032809.1_g000001 Rmu_sc0033529.1_g000001 Rmu_sc0034118.1_g000003 Rmu_sc0034164.1_g000001 Rmu_sc0034184.1_g000001 Rmu_sc0035648.1_g000001 Rmu_sc0036402.1_g000002 Rmu_sc0037863.1_g000001 Rmu_sc0038281.1_g000001 Rmu_ssc0000044.1_g000007 Rmu_ssc0000047.1_g000018 Rmu_ssc0000087.1_g000060 Rmu_ssc0000114.1_g000007 Rmu_ssc0000134.1_g000026 Rmu_ssc0000187.1_g000019 Rmu_ssc0000200.1_g000014 Rmu_ssc0000215.1_g000017 Rmu_ssc0000218.1_g000028 Rmu_ssc0000233.1_g000064 Rmu_ssc0000233.1_g000068 Rmu_ssc0000238.1_g000029 Rmu_ssc0000259.1_g000004 Rmu_ssc0000300.1_g000005 Rmu_ssc0000322.1_g000014 Rmu_ssc0000339.1_g000025 Rmu_ssc0000377.1_g000027 Rmu_ssc0000377.1_g000034 Rmu_ssc0000410.1_g000025 Rmu_ssc0000442.1_g000034 Rmu_ssc0000443.1_g000021 Rmu_ssc0000443.1_g000028 Rmu_ssc0000467.1_g000041 Rmu_ssc0000476.1_g000007
rosa_roxburghii Rroxscaffold_1G00010900 Rroxscaffold_1G00029770 Rroxscaffold_3G00261700 Rroxscaffold_4G00310470 Rroxscaffold_6G00425670 Rroxscaffold_7G00195370
rosa_rugosa Rorug01G0084600 Rorug05G0348400
rosa_samantha Rh2DG490800 Rh5AG437500 Rh6DG142100
rosa_wichuraiana Rw1G004160 Rw1G004410 Rw1G010750 Rw1G012620 Rw1G014240 Rw1G028600 Rw2G022270 Rw2G025600 Rw4G002660 Rw4G005160 Rw4G010950 Rw5G011450 Rw5G022530 Rw5G024030 Rw5G024050 Rw5G029540 Rw5G038900 Rw5G047990 Rw6G004550 Rw6G015580 Rw7G016560 Rw7G040340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 506
AcsI RAATTY 3 cut(s) 23, 226, 441
AcuI CTGAAG 1 cut(s) 233
AcvI CACGTG 1 cut(s) 524
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 4 cut(s) 154, 196, 294, 355
AjiI CACGTC 2 cut(s) 221, 506
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 1 cut(s) 361
AluI AGCT 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 2 cut(s) 422, 541
ApoI RAATTY 3 cut(s) 23, 226, 441
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 542
AsuNHI GCTAGC 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 446
BaeI ACNNNNGTAYC 2 cut(s) 38, 71
BbrPI CACGTG 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 275
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 1 cut(s) 421
BclI TGATCA 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 1 cut(s) 305
BglI GCCNNNNNGGC 2 cut(s) 92, 540
Bme1390I CCNGG 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 2 cut(s) 221, 506
BmgT120I GGNCC 1 cut(s) 542
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 420
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 54, 375
BseNI ACTGG 1 cut(s) 313
BshFI GGCC 2 cut(s) 424, 543
BsiHKCI CYCGRG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 2 cut(s) 424, 543
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 2 cut(s) 363, 511
BspANI GGCC 2 cut(s) 424, 543
BspCNI CTCAG 2 cut(s) 53, 376
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 506
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 2 cut(s) 363, 511
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 40, 384
BstDSI CCRYGG 1 cut(s) 535
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 366, 514
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 2 cut(s) 363, 511
BstMWI GCNNNNNNNGC 2 cut(s) 92, 540
BstNI CCWGG 1 cut(s) 421
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 275
BsuRI GGCC 2 cut(s) 424, 543
BtgI CCRYGG 1 cut(s) 535
BtrI CACGTC 2 cut(s) 221, 506
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 5, 361, 383, 424, 534, 543
CviKI_1 RGCY 6 cut(s) 5, 361, 383, 424, 534, 543
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 2 cut(s) 40, 384
DpnI GATC 2 cut(s) 365, 513
DpnII GATC 2 cut(s) 363, 511
Eco147I AGGCCT 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 419
FaeI CATG 1 cut(s) 205
FaiI YATR 9 cut(s) 203, 260, 302, 318, 330, 393, 459, 530, 556
FatI CATG 1 cut(s) 201
FbaI TGATCA 1 cut(s) 363
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 424, 543
HhaI GCGC 1 cut(s) 210
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 4 cut(s) 38, 262, 271, 342
Hpy188I TCNGA 3 cut(s) 43, 73, 267
Hpy188III TCNNGA 2 cut(s) 430, 446
HpyAV CCTTC 3 cut(s) 38, 208, 361
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 3 cut(s) 220, 505, 523
HpyCH4V TGCA 2 cut(s) 376, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 540
HpyF3I CTNAG 2 cut(s) 40, 384
HpySE526I ACGT 3 cut(s) 220, 505, 523
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 363, 511
LpnPI CCDG 6 cut(s) 33, 224, 326, 406, 433, 438
LweI GCATC 1 cut(s) 420
MaeI CTAG 1 cut(s) 305
MaeII ACGT 3 cut(s) 220, 505, 523
MalI GATC 2 cut(s) 365, 513
MboI GATC 2 cut(s) 363, 511
MboII GAAGA 2 cut(s) 263, 280
MluCI AATT 5 cut(s) 23, 226, 297, 441, 454
MlyI GAGTC 2 cut(s) 32, 265
MmeI TCCRAC 3 cut(s) 35, 303, 481
MnlI CCTC 4 cut(s) 381, 494, 533, 555
MspR9I CCNGG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 421
MwoI GCNNNNNNNGC 2 cut(s) 92, 540
NdeII GATC 2 cut(s) 363, 511
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 1 cut(s) 205
NspI RCATGY 1 cut(s) 205
PceI AGGCCT 1 cut(s) 424
PciI ACATGT 1 cut(s) 201
PfeI GAWTC 2 cut(s) 262, 342
PleI GAGTC 2 cut(s) 32, 265
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
PpsI GAGTC 2 cut(s) 32, 265
Ppu21I YACGTR 1 cut(s) 524
PscI ACATGT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 419
PspCI CACGTG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 419
PspPI GGNCC 1 cut(s) 542
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 363, 511
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 32, 265
ScrFI CCNGG 1 cut(s) 421
SfaNI GCATC 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 5 cut(s) 23, 226, 297, 441, 454
SseBI AGGCCT 1 cut(s) 424
SspMI CTAG 1 cut(s) 305
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 3 cut(s) 223, 508, 526
TasI AATT 5 cut(s) 23, 226, 297, 441, 454
TfiI GAWTC 2 cut(s) 262, 342
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 150, 171
TspRI CASTG 1 cut(s) 112
XapI RAATTY 3 cut(s) 23, 226, 441
XceI RCATGY 1 cut(s) 205
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.