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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 798 |
| AciI | CCGC | 3 cut(s) | 328, 790, 884 |
| AclWI | GGATC | 3 cut(s) | 2, 728, 814 |
| AcsI | RAATTY | 2 cut(s) | 394, 609 |
| AcuI | CTGAAG | 2 cut(s) | 209, 959 |
| AfaI | GTAC | 3 cut(s) | 56, 704, 944 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 660 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AgsI | TTSAA | 6 cut(s) | 232, 361, 523, 577, 728, 861 |
| AjiI | CACGTC | 1 cut(s) | 389 |
| AluBI | AGCT | 1 cut(s) | 464 |
| AluI | AGCT | 1 cut(s) | 464 |
| Alw26I | GTCTC | 2 cut(s) | 93, 550 |
| AlwI | GGATC | 3 cut(s) | 2, 728, 814 |
| Ama87I | CYCGRG | 1 cut(s) | 614 |
| AoxI | GGCC | 1 cut(s) | 590 |
| ApoI | RAATTY | 2 cut(s) | 394, 609 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AspS9I | GGNCC | 2 cut(s) | 146, 591 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaI | CYCGRG | 1 cut(s) | 614 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 798 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| BccI | CCATC | 2 cut(s) | 122, 137 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 788, 822 |
| BcoDI | GTCTC | 2 cut(s) | 93, 550 |
| BfaI | CTAG | 3 cut(s) | 473, 588, 908 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmeT110I | CYCGRG | 1 cut(s) | 614 |
| BmgBI | CACGTC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 2 cut(s) | 146, 591 |
| BmiI | GGNNCC | 1 cut(s) | 800 |
| BmrI | ACTGGG | 1 cut(s) | 606 |
| BmsI | GCATC | 2 cut(s) | 244, 363 |
| BmuI | ACTGGG | 1 cut(s) | 606 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaBI | GATNNNNATC | 1 cut(s) | 719 |
| BsaJI | CCNNGG | 2 cut(s) | 615, 802 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 660 |
| Bse1I | ACTGG | 2 cut(s) | 481, 601 |
| Bse3DI | GCAATG | 1 cut(s) | 928 |
| Bse8I | GATNNNNATC | 1 cut(s) | 719 |
| BseDI | CCNNGG | 2 cut(s) | 615, 802 |
| BseGI | GGATG | 2 cut(s) | 259, 848 |
| BseJI | GATNNNNATC | 1 cut(s) | 719 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 660 |
| BseMI | GCAATG | 1 cut(s) | 928 |
| BseMII | CTCAG | 3 cut(s) | 12, 54, 543 |
| BseNI | ACTGG | 2 cut(s) | 481, 601 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 1 cut(s) | 592 |
| BshNI | GGYRCC | 1 cut(s) | 798 |
| BsiHKCI | CYCGRG | 1 cut(s) | 614 |
| BslFI | GGGAC | 3 cut(s) | 279, 613, 773 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 660 |
| BsmAI | GTCTC | 2 cut(s) | 93, 550 |
| BsmFI | GGGAC | 3 cut(s) | 279, 613, 773 |
| BsnI | GGCC | 1 cut(s) | 592 |
| BsoBI | CYCGRG | 1 cut(s) | 614 |
| Bsp143I | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| BspACI | CCGC | 3 cut(s) | 328, 790, 884 |
| BspANI | GGCC | 1 cut(s) | 592 |
| BspCNI | CTCAG | 3 cut(s) | 13, 53, 544 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 800 |
| BspPI | GGATC | 3 cut(s) | 2, 728, 814 |
| BspT107I | GGYRCC | 1 cut(s) | 798 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrDI | GCAATG | 1 cut(s) | 928 |
| BsrI | ACTGG | 2 cut(s) | 481, 601 |
| BssECI | CCNNGG | 2 cut(s) | 615, 802 |
| BssMI | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| Bst4CI | ACNGT | 6 cut(s) | 62, 150, 249, 310, 702, 739 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 930 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 4 cut(s) | 21, 40, 203, 552 |
| BstF5I | GGATG | 2 cut(s) | 259, 848 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 5 cut(s) | 10, 202, 432, 723, 822 |
| BstMAI | GTCTC | 2 cut(s) | 93, 550 |
| BstMBI | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 930 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BsuRI | GGCC | 1 cut(s) | 592 |
| BtrI | CACGTC | 1 cut(s) | 389 |
| BtsCI | GGATG | 2 cut(s) | 259, 848 |
| BtsI | GCAGTG | 2 cut(s) | 105, 889 |
| BtsIMutI | CAGTG | 6 cut(s) | 105, 126, 320, 594, 762, 889 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 2 cut(s) | 146, 591 |
| Csp6I | GTAC | 3 cut(s) | 55, 703, 943 |
| CviAII | CATG | 3 cut(s) | 284, 785, 814 |
| CviJI | RGCY | 8 cut(s) | 5, 207, 464, 537, 551, 592, 620, 777 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 207, 464, 537, 551, 592, 620, 777 |
| CviQI | GTAC | 3 cut(s) | 55, 703, 943 |
| DdeI | CTNAG | 4 cut(s) | 21, 40, 203, 552 |
| DpnI | GATC | 5 cut(s) | 9, 201, 431, 722, 821 |
| DpnII | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| DraI | TTTAAA | 1 cut(s) | 832 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 2 cut(s) | 209, 959 |
| Eco88I | CYCGRG | 1 cut(s) | 614 |
| FaeI | CATG | 3 cut(s) | 287, 788, 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 557, 589 |
| FaqI | GGGAC | 3 cut(s) | 279, 613, 773 |
| FatI | CATG | 3 cut(s) | 283, 784, 813 |
| FokI | GGATG | 2 cut(s) | 266, 835 |
| FspBI | CTAG | 3 cut(s) | 473, 588, 908 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| HaeIII | GGCC | 1 cut(s) | 592 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin1II | CATG | 3 cut(s) | 287, 788, 817 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HinfI | GANTC | 8 cut(s) | 38, 324, 439, 568, 685, 715, 728, 767 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 698 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 73, 154, 720, 939 |
| Hpy188III | TCNNGA | 4 cut(s) | 284, 574, 614, 809 |
| Hpy8I | GTNNAC | 1 cut(s) | 698 |
| HpyAV | CCTTC | 3 cut(s) | 233, 529, 863 |
| HpyCH4III | ACNGT | 6 cut(s) | 62, 150, 249, 310, 702, 739 |
| HpyCH4IV | ACGT | 2 cut(s) | 268, 388 |
| HpyCH4V | TGCA | 4 cut(s) | 544, 784, 894, 924 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 930 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 40, 203, 552 |
| HpySE526I | ACGT | 2 cut(s) | 268, 388 |
| Hsp92II | CATG | 3 cut(s) | 287, 788, 817 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Kzo9I | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| LpnPI | CCDG | 6 cut(s) | 33, 199, 312, 494, 582, 959 |
| LweI | GCATC | 2 cut(s) | 244, 363 |
| MaeI | CTAG | 3 cut(s) | 473, 588, 908 |
| MaeII | ACGT | 2 cut(s) | 268, 388 |
| MaeIII | GTNAC | 2 cut(s) | 739, 809 |
| MalI | GATC | 5 cut(s) | 9, 201, 431, 722, 821 |
| MboI | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| MboII | GAAGA | 2 cut(s) | 244, 431 |
| MluCI | AATT | 5 cut(s) | 394, 457, 609, 622, 689 |
| MlyI | GAGTC | 4 cut(s) | 32, 433, 694, 761 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 5 cut(s) | 610, 716, 797, 968, 972 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 3 cut(s) | 176, 261, 831 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 930 |
| NdeII | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| NlaIII | CATG | 3 cut(s) | 287, 788, 817 |
| NlaIV | GGNNCC | 1 cut(s) | 800 |
| NmuCI | GTSAC | 1 cut(s) | 809 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 4 cut(s) | 324, 568, 715, 728 |
| PleI | GAGTC | 4 cut(s) | 32, 433, 693, 761 |
| PpsI | GAGTC | 4 cut(s) | 32, 433, 693, 761 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspN4I | GGNNCC | 1 cut(s) | 800 |
| PspPI | GGNCC | 2 cut(s) | 146, 591 |
| RsaI | GTAC | 3 cut(s) | 56, 704, 944 |
| RsaNI | GTAC | 3 cut(s) | 55, 703, 943 |
| SaqAI | TTAA | 3 cut(s) | 176, 261, 831 |
| Sau3AI | GATC | 5 cut(s) | 7, 199, 429, 720, 819 |
| Sau96I | GGNCC | 2 cut(s) | 146, 591 |
| SchI | GAGTC | 4 cut(s) | 32, 433, 694, 761 |
| SfaNI | GCATC | 2 cut(s) | 244, 363 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 2 cut(s) | 50, 260 |
| SmoI | CTYRAG | 2 cut(s) | 50, 260 |
| Sse9I | AATT | 5 cut(s) | 394, 457, 609, 622, 689 |
| SsiI | CCGC | 3 cut(s) | 328, 790, 884 |
| SspMI | CTAG | 3 cut(s) | 473, 588, 908 |
| TaaI | ACNGT | 6 cut(s) | 62, 150, 249, 310, 702, 739 |
| TaiI | ACGT | 2 cut(s) | 271, 391 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 394, 457, 609, 622, 689 |
| TfiI | GAWTC | 4 cut(s) | 324, 568, 715, 728 |
| Tru1I | TTAA | 3 cut(s) | 176, 261, 831 |
| Tru9I | TTAA | 3 cut(s) | 176, 261, 831 |
| TscAI | CASTG | 6 cut(s) | 112, 133, 320, 601, 769, 896 |
| TseFI | GTSAC | 1 cut(s) | 809 |
| Tsp45I | GTSAC | 1 cut(s) | 809 |
| TspDTI | ATGAA | 3 cut(s) | 272, 650, 765 |
| TspGWI | ACGGA | 3 cut(s) | 60, 812, 859 |
| TspRI | CASTG | 6 cut(s) | 112, 133, 320, 601, 769, 896 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 2 cut(s) | 394, 609 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 3 cut(s) | 473, 588, 908 |