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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 318, 407 |
| AclWI | GGATC | 3 cut(s) | 2, 185, 605 |
| AcsI | RAATTY | 1 cut(s) | 23 |
| AcuI | CTGAAG | 2 cut(s) | 200, 375 |
| AcvI | CACGTG | 1 cut(s) | 623 |
| AfaI | GTAC | 3 cut(s) | 56, 212, 471 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 294, 591 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AgsI | TTSAA | 3 cut(s) | 223, 454, 508 |
| AluBI | AGCT | 2 cut(s) | 450, 460 |
| AluI | AGCT | 2 cut(s) | 450, 460 |
| Alw26I | GTCTC | 1 cut(s) | 481 |
| AlwI | GGATC | 3 cut(s) | 2, 185, 605 |
| AoxI | GGCC | 1 cut(s) | 521 |
| ApoI | RAATTY | 1 cut(s) | 23 |
| AspS9I | GGNCC | 2 cut(s) | 409, 522 |
| AvaII | GGWCC | 1 cut(s) | 409 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 1 cut(s) | 623 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| BccI | CCATC | 1 cut(s) | 148 |
| BclI | TGATCA | 1 cut(s) | 462 |
| BcoDI | GTCTC | 1 cut(s) | 481 |
| BfaI | CTAG | 3 cut(s) | 404, 422, 519 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| Bme18I | GGWCC | 1 cut(s) | 409 |
| BmgT120I | GGNCC | 2 cut(s) | 409, 522 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 623 |
| BsaJI | CCNNGG | 1 cut(s) | 546 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 205, 294, 591 |
| Bse1I | ACTGG | 2 cut(s) | 299, 412 |
| BseDI | CCNNGG | 1 cut(s) | 546 |
| BseGI | GGATG | 2 cut(s) | 140, 250 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 294, 591 |
| BseMII | CTCAG | 3 cut(s) | 54, 167, 474 |
| BseNI | ACTGG | 2 cut(s) | 299, 412 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 1 cut(s) | 523 |
| BslFI | GGGAC | 1 cut(s) | 270 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 294, 591 |
| BsmAI | GTCTC | 1 cut(s) | 481 |
| BsmFI | GGGAC | 1 cut(s) | 270 |
| BsnI | GGCC | 1 cut(s) | 523 |
| Bsp143I | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| BspACI | CCGC | 2 cut(s) | 318, 407 |
| BspANI | GGCC | 1 cut(s) | 523 |
| BspCNI | CTCAG | 3 cut(s) | 53, 168, 475 |
| BspHI | TCATGA | 1 cut(s) | 273 |
| BspPI | GGATC | 3 cut(s) | 2, 185, 605 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BsrI | ACTGG | 2 cut(s) | 299, 412 |
| BssECI | CCNNGG | 1 cut(s) | 546 |
| BssMI | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstBAI | YACGTR | 1 cut(s) | 623 |
| BstC8I | GCNNGC | 1 cut(s) | 322 |
| BstDEI | CTNAG | 3 cut(s) | 40, 176, 483 |
| BstF5I | GGATG | 2 cut(s) | 140, 250 |
| BstKTI | GATC | 5 cut(s) | 10, 193, 363, 465, 613 |
| BstMAI | GTCTC | 1 cut(s) | 481 |
| BstMBI | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BsuRI | GGCC | 1 cut(s) | 523 |
| BtsCI | GGATG | 2 cut(s) | 140, 250 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 4 cut(s) | 105, 310, 399, 472 |
| Cac8I | GCNNGC | 1 cut(s) | 322 |
| CciI | TCATGA | 1 cut(s) | 273 |
| Cfr13I | GGNCC | 2 cut(s) | 409, 522 |
| Csp6I | GTAC | 3 cut(s) | 55, 211, 470 |
| CviAII | CATG | 2 cut(s) | 274, 639 |
| CviJI | RGCY | 8 cut(s) | 5, 298, 421, 450, 460, 482, 523, 551 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 298, 421, 450, 460, 482, 523, 551 |
| CviQI | GTAC | 3 cut(s) | 55, 211, 470 |
| DdeI | CTNAG | 3 cut(s) | 40, 176, 483 |
| DpnI | GATC | 5 cut(s) | 9, 192, 362, 464, 612 |
| DpnII | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| Eco47I | GGWCC | 1 cut(s) | 409 |
| Eco57I | CTGAAG | 2 cut(s) | 200, 375 |
| Eco72I | CACGTG | 1 cut(s) | 623 |
| FaeI | CATG | 1 cut(s) | 277 |
| FaiI | YATR | 9 cut(s) | 186, 275, 359, 417, 429, 492, 530, 558, 640 |
| FaqI | GGGAC | 1 cut(s) | 270 |
| FatI | CATG | 1 cut(s) | 273 |
| FbaI | TGATCA | 1 cut(s) | 462 |
| FokI | GGATG | 2 cut(s) | 127, 257 |
| FspBI | CTAG | 3 cut(s) | 404, 422, 519 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeIII | GGCC | 1 cut(s) | 523 |
| Hin1II | CATG | 1 cut(s) | 277 |
| HindIII | AAGCTT | 1 cut(s) | 448 |
| HinfI | GANTC | 4 cut(s) | 38, 314, 370, 441 |
| Hpy166II | GTNNAC | 1 cut(s) | 470 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 177 |
| Hpy188III | TCNNGA | 2 cut(s) | 274, 505 |
| Hpy8I | GTNNAC | 1 cut(s) | 470 |
| HpyAV | CCTTC | 3 cut(s) | 38, 148, 224 |
| HpyCH4IV | ACGT | 2 cut(s) | 259, 622 |
| HpyCH4V | TGCA | 3 cut(s) | 475, 590, 635 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 3 cut(s) | 40, 176, 483 |
| HpySE526I | ACGT | 2 cut(s) | 259, 622 |
| Hsp92II | CATG | 1 cut(s) | 277 |
| Ksp22I | TGATCA | 1 cut(s) | 462 |
| Kzo9I | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| LpnPI | CCDG | 5 cut(s) | 33, 190, 280, 302, 425 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 3 cut(s) | 404, 422, 519 |
| MaeII | ACGT | 2 cut(s) | 259, 622 |
| MalI | GATC | 5 cut(s) | 9, 192, 362, 464, 612 |
| MboI | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| MboII | GAAGA | 2 cut(s) | 235, 362 |
| MluCI | AATT | 4 cut(s) | 23, 236, 540, 553 |
| MlyI | GAGTC | 2 cut(s) | 32, 364 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 5 cut(s) | 68, 97, 171, 490, 541 |
| MseI | TTAA | 2 cut(s) | 167, 252 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| NlaIII | CATG | 1 cut(s) | 277 |
| PagI | TCATGA | 1 cut(s) | 273 |
| PfeI | GAWTC | 2 cut(s) | 314, 441 |
| PleI | GAGTC | 2 cut(s) | 32, 364 |
| PmaCI | CACGTG | 1 cut(s) | 623 |
| PmlI | CACGTG | 1 cut(s) | 623 |
| PpsI | GAGTC | 2 cut(s) | 32, 364 |
| Ppu21I | YACGTR | 1 cut(s) | 623 |
| PspCI | CACGTG | 1 cut(s) | 623 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspPI | GGNCC | 2 cut(s) | 409, 522 |
| RsaI | GTAC | 3 cut(s) | 56, 212, 471 |
| RsaNI | GTAC | 3 cut(s) | 55, 211, 470 |
| SaqAI | TTAA | 2 cut(s) | 167, 252 |
| Sau3AI | GATC | 5 cut(s) | 7, 190, 360, 462, 610 |
| Sau96I | GGNCC | 2 cut(s) | 409, 522 |
| SchI | GAGTC | 2 cut(s) | 32, 364 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SinI | GGWCC | 1 cut(s) | 409 |
| SmlI | CTYRAG | 2 cut(s) | 50, 251 |
| SmoI | CTYRAG | 2 cut(s) | 50, 251 |
| Sse9I | AATT | 4 cut(s) | 23, 236, 540, 553 |
| SsiI | CCGC | 2 cut(s) | 318, 407 |
| SspMI | CTAG | 3 cut(s) | 404, 422, 519 |
| TaiI | ACGT | 2 cut(s) | 262, 625 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 23, 236, 540, 553 |
| TatI | WGTACW | 1 cut(s) | 469 |
| TfiI | GAWTC | 2 cut(s) | 314, 441 |
| Tru1I | TTAA | 2 cut(s) | 167, 252 |
| Tru9I | TTAA | 2 cut(s) | 167, 252 |
| TscAI | CASTG | 4 cut(s) | 112, 310, 399, 472 |
| TspDTI | ATGAA | 3 cut(s) | 150, 262, 581 |
| TspGWI | ACGGA | 1 cut(s) | 50 |
| TspRI | CASTG | 4 cut(s) | 112, 310, 399, 472 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 409 |
| XapI | RAATTY | 1 cut(s) | 23 |
| XspI | CTAG | 3 cut(s) | 404, 422, 519 |