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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 782 |
| AatII | GACGTC | 1 cut(s) | 786 |
| AccB1I | GGYRCC | 1 cut(s) | 673 |
| AciI | CCGC | 2 cut(s) | 250, 398 |
| AclWI | GGATC | 1 cut(s) | 596 |
| AcsI | RAATTY | 2 cut(s) | 23, 531 |
| AcuI | CTGAAG | 2 cut(s) | 366, 672 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AcyI | GRCGYC | 1 cut(s) | 783 |
| AdeI | CACNNNGTG | 1 cut(s) | 632 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 226 |
| AflIII | ACRYGT | 1 cut(s) | 291 |
| AgsI | TTSAA | 6 cut(s) | 154, 283, 445, 499, 577, 808 |
| AjiI | CACGTC | 3 cut(s) | 311, 596, 644 |
| AjnI | CCWGG | 1 cut(s) | 220 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 216, 248 |
| AluBI | AGCT | 1 cut(s) | 459 |
| AluI | AGCT | 1 cut(s) | 459 |
| Alw26I | GTCTC | 1 cut(s) | 317 |
| AlwI | GGATC | 1 cut(s) | 596 |
| Ama87I | CYCGRG | 1 cut(s) | 536 |
| AoxI | GGCC | 2 cut(s) | 512, 769 |
| ApoI | RAATTY | 2 cut(s) | 23, 531 |
| AspLEI | GCGC | 1 cut(s) | 300 |
| AspS9I | GGNCC | 1 cut(s) | 513 |
| AsuHPI | GGTGA | 1 cut(s) | 662 |
| AsuNHI | GCTAGC | 1 cut(s) | 394 |
| AvaI | CYCGRG | 1 cut(s) | 536 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 673 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 222 |
| BclI | TGATCA | 1 cut(s) | 453 |
| BcoDI | GTCTC | 1 cut(s) | 317 |
| BfaI | CTAG | 3 cut(s) | 395, 510, 779 |
| BfmI | CTRYAG | 1 cut(s) | 724 |
| BglII | AGATCT | 1 cut(s) | 490 |
| Bme1390I | CCNGG | 1 cut(s) | 222 |
| BmeT110I | CYCGRG | 1 cut(s) | 536 |
| BmgBI | CACGTC | 3 cut(s) | 311, 596, 644 |
| BmgT120I | GGNCC | 1 cut(s) | 513 |
| BmiI | GGNNCC | 1 cut(s) | 675 |
| BmrFI | CCNGG | 1 cut(s) | 222 |
| BmrI | ACTGGG | 1 cut(s) | 528 |
| BmsI | GCATC | 2 cut(s) | 166, 829 |
| BmtI | GCTAGC | 1 cut(s) | 398 |
| BmuI | ACTGGG | 1 cut(s) | 528 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| BsaHI | GRCGYC | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 2 cut(s) | 220, 537 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 226 |
| Bse1I | ACTGG | 2 cut(s) | 231, 523 |
| Bse3DI | GCAATG | 1 cut(s) | 718 |
| BseBI | CCWGG | 1 cut(s) | 222 |
| BseDI | CCNNGG | 2 cut(s) | 220, 537 |
| BseGI | GGATG | 2 cut(s) | 181, 844 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 226 |
| BseMI | GCAATG | 1 cut(s) | 718 |
| BseMII | CTCAG | 2 cut(s) | 54, 465 |
| BseNI | ACTGG | 2 cut(s) | 231, 523 |
| BshFI | GGCC | 2 cut(s) | 514, 771 |
| BshNI | GGYRCC | 1 cut(s) | 673 |
| BsiHKCI | CYCGRG | 1 cut(s) | 536 |
| BslFI | GGGAC | 3 cut(s) | 201, 535, 654 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 226 |
| BsmAI | GTCTC | 1 cut(s) | 317 |
| BsmBI | CGTCTC | 1 cut(s) | 317 |
| BsmFI | GGGAC | 3 cut(s) | 201, 535, 654 |
| BsnI | GGCC | 2 cut(s) | 514, 771 |
| BsoBI | CYCGRG | 1 cut(s) | 536 |
| Bsp143I | GATC | 4 cut(s) | 351, 453, 490, 601 |
| BspACI | CCGC | 2 cut(s) | 250, 398 |
| BspANI | GGCC | 2 cut(s) | 514, 771 |
| BspCNI | CTCAG | 2 cut(s) | 53, 466 |
| BspLI | GGNNCC | 1 cut(s) | 675 |
| BspOI | GCTAGC | 1 cut(s) | 398 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BspT107I | GGYRCC | 1 cut(s) | 673 |
| BsrDI | GCAATG | 1 cut(s) | 718 |
| BsrI | ACTGG | 2 cut(s) | 231, 523 |
| BssECI | CCNNGG | 2 cut(s) | 220, 537 |
| BssMI | GATC | 4 cut(s) | 351, 453, 490, 601 |
| BssNI | GRCGYC | 1 cut(s) | 783 |
| Bst2UI | CCWGG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| BstACI | GRCGYC | 1 cut(s) | 783 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstC8I | GCNNGC | 2 cut(s) | 254, 396 |
| BstDEI | CTNAG | 4 cut(s) | 40, 474, 678, 828 |
| BstF5I | GGATG | 2 cut(s) | 181, 844 |
| BstHHI | GCGC | 1 cut(s) | 300 |
| BstKTI | GATC | 4 cut(s) | 354, 456, 493, 604 |
| BstMAI | GTCTC | 1 cut(s) | 317 |
| BstMBI | GATC | 4 cut(s) | 351, 453, 490, 601 |
| BstNI | CCWGG | 1 cut(s) | 222 |
| BstNSI | RCATGY | 1 cut(s) | 295 |
| BstSCI | CCNGG | 1 cut(s) | 220 |
| BstSFI | CTRYAG | 1 cut(s) | 724 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BstX2I | RGATCY | 1 cut(s) | 490 |
| BstYI | RGATCY | 1 cut(s) | 490 |
| BsuRI | GGCC | 2 cut(s) | 514, 771 |
| BtrI | CACGTC | 3 cut(s) | 311, 596, 644 |
| BtsCI | GGATG | 2 cut(s) | 181, 844 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 242, 516 |
| Cac8I | GCNNGC | 2 cut(s) | 254, 396 |
| CfoI | GCGC | 1 cut(s) | 300 |
| Cfr13I | GGNCC | 1 cut(s) | 513 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 304, 339 |
| CviAII | CATG | 3 cut(s) | 292, 720, 773 |
| CviJI | RGCY | 9 cut(s) | 5, 230, 412, 459, 473, 514, 542, 749, 771 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 230, 412, 459, 473, 514, 542, 749, 771 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 4 cut(s) | 40, 474, 678, 828 |
| DpnI | GATC | 4 cut(s) | 353, 455, 492, 603 |
| DpnII | GATC | 4 cut(s) | 351, 453, 490, 601 |
| DraIII | CACNNNGTG | 1 cut(s) | 632 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 782 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 782 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 672 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| Eco88I | CYCGRG | 1 cut(s) | 536 |
| EcoRII | CCWGG | 1 cut(s) | 220 |
| Esp3I | CGTCTC | 1 cut(s) | 317 |
| FaeI | CATG | 3 cut(s) | 295, 723, 776 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 807, 839 |
| FaqI | GGGAC | 3 cut(s) | 201, 535, 654 |
| FatI | CATG | 3 cut(s) | 291, 719, 772 |
| FbaI | TGATCA | 1 cut(s) | 453 |
| FokI | GGATG | 2 cut(s) | 188, 851 |
| FspBI | CTAG | 3 cut(s) | 395, 510, 779 |
| GlaI | GCGC | 1 cut(s) | 299 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HaeIII | GGCC | 2 cut(s) | 514, 771 |
| HhaI | GCGC | 1 cut(s) | 300 |
| Hin1I | GRCGYC | 1 cut(s) | 783 |
| Hin1II | CATG | 3 cut(s) | 295, 723, 776 |
| Hin6I | GCGC | 1 cut(s) | 298 |
| HinP1I | GCGC | 1 cut(s) | 298 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HinfI | GANTC | 5 cut(s) | 38, 246, 361, 432, 731 |
| HphI | GGTGA | 1 cut(s) | 662 |
| Hpy166II | GTNNAC | 1 cut(s) | 787 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 4 cut(s) | 206, 496, 536, 851 |
| Hpy8I | GTNNAC | 1 cut(s) | 787 |
| HpyAV | CCTTC | 5 cut(s) | 38, 321, 451, 696, 758 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4IV | ACGT | 7 cut(s) | 190, 310, 595, 613, 631, 643, 783 |
| HpyCH4V | TGCA | 5 cut(s) | 466, 581, 626, 667, 800 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 474, 678, 828 |
| HpySE526I | ACGT | 7 cut(s) | 190, 310, 595, 613, 631, 643, 783 |
| Hsp92I | GRCGYC | 1 cut(s) | 783 |
| Hsp92II | CATG | 3 cut(s) | 295, 723, 776 |
| HspAI | GCGC | 1 cut(s) | 298 |
| Ksp22I | TGATCA | 1 cut(s) | 453 |
| Kzo9I | GATC | 4 cut(s) | 351, 453, 490, 601 |
| LmnI | GCTCC | 1 cut(s) | 222 |
| LpnPI | CCDG | 6 cut(s) | 33, 207, 212, 234, 398, 504 |
| LweI | GCATC | 2 cut(s) | 166, 829 |
| MaeI | CTAG | 3 cut(s) | 395, 510, 779 |
| MaeII | ACGT | 7 cut(s) | 190, 310, 595, 613, 631, 643, 783 |
| MalI | GATC | 4 cut(s) | 353, 455, 492, 603 |
| MboI | GATC | 4 cut(s) | 351, 453, 490, 601 |
| MboII | GAAGA | 4 cut(s) | 166, 353, 500, 773 |
| MfeI | CAATTG | 1 cut(s) | 795 |
| MflI | RGATCY | 1 cut(s) | 490 |
| MluCI | AATT | 5 cut(s) | 23, 316, 531, 544, 795 |
| MlyI | GAGTC | 3 cut(s) | 32, 355, 740 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 6 cut(s) | 471, 532, 641, 739, 761, 811 |
| MseI | TTAA | 2 cut(s) | 183, 302 |
| MspR9I | CCNGG | 1 cut(s) | 222 |
| MunI | CAATTG | 1 cut(s) | 795 |
| MvaI | CCWGG | 1 cut(s) | 222 |
| NdeII | GATC | 4 cut(s) | 351, 453, 490, 601 |
| NheI | GCTAGC | 1 cut(s) | 394 |
| NlaIII | CATG | 3 cut(s) | 295, 723, 776 |
| NlaIV | GGNNCC | 1 cut(s) | 675 |
| NspI | RCATGY | 1 cut(s) | 295 |
| PciI | ACATGT | 1 cut(s) | 291 |
| PfeI | GAWTC | 2 cut(s) | 246, 432 |
| PleI | GAGTC | 3 cut(s) | 32, 355, 739 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 3 cut(s) | 32, 355, 739 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PscI | ACATGT | 1 cut(s) | 291 |
| Psp6I | CCWGG | 1 cut(s) | 220 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspGI | CCWGG | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 1 cut(s) | 675 |
| PspPI | GGNCC | 1 cut(s) | 513 |
| PsuI | RGATCY | 1 cut(s) | 490 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 2 cut(s) | 183, 302 |
| Sau3AI | GATC | 4 cut(s) | 351, 453, 490, 601 |
| Sau96I | GGNCC | 1 cut(s) | 513 |
| SchI | GAGTC | 3 cut(s) | 32, 355, 740 |
| ScrFI | CCNGG | 1 cut(s) | 222 |
| SfaNI | GCATC | 2 cut(s) | 166, 829 |
| SfcI | CTRYAG | 1 cut(s) | 724 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 5 cut(s) | 23, 316, 531, 544, 795 |
| SsiI | CCGC | 2 cut(s) | 250, 398 |
| SspMI | CTAG | 3 cut(s) | 395, 510, 779 |
| StyD4I | CCNGG | 1 cut(s) | 220 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TaiI | ACGT | 7 cut(s) | 193, 313, 598, 616, 634, 646, 786 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 316, 531, 544, 795 |
| TfiI | GAWTC | 2 cut(s) | 246, 432 |
| Tru1I | TTAA | 2 cut(s) | 183, 302 |
| Tru9I | TTAA | 2 cut(s) | 183, 302 |
| TscAI | CASTG | 3 cut(s) | 112, 242, 523 |
| TspDTI | ATGAA | 4 cut(s) | 150, 501, 669, 729 |
| TspRI | CASTG | 3 cut(s) | 112, 242, 523 |
| XapI | RAATTY | 2 cut(s) | 23, 531 |
| XceI | RCATGY | 1 cut(s) | 295 |
| XspI | CTAG | 3 cut(s) | 395, 510, 779 |
| ZraI | GACGTC | 1 cut(s) | 784 |