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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 2, 529 |
| AcsI | RAATTY | 2 cut(s) | 499, 714 |
| AcuI | CTGAAG | 2 cut(s) | 314, 549 |
| AfaI | GTAC | 3 cut(s) | 56, 161, 602 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 169, 420 |
| AflII | CTTAAG | 1 cut(s) | 365 |
| AgsI | TTSAA | 4 cut(s) | 337, 466, 628, 682 |
| AjiI | CACGTC | 1 cut(s) | 494 |
| AjnI | CCWGG | 1 cut(s) | 692 |
| Alw26I | GTCTC | 2 cut(s) | 93, 198 |
| AlwI | GGATC | 2 cut(s) | 2, 529 |
| ApoI | RAATTY | 2 cut(s) | 499, 714 |
| AspLEI | GCGC | 1 cut(s) | 483 |
| AspS9I | GGNCC | 2 cut(s) | 146, 251 |
| AsuC2I | CCSGG | 1 cut(s) | 404 |
| AsuHPI | GGTGA | 1 cut(s) | 277 |
| AvaII | GGWCC | 2 cut(s) | 146, 251 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BauI | CACGAG | 1 cut(s) | 96 |
| BbsI | GAAGAC | 2 cut(s) | 344, 548 |
| BccI | CCATC | 5 cut(s) | 122, 137, 171, 227, 242 |
| BciT130I | CCWGG | 1 cut(s) | 694 |
| BclI | TGATCA | 1 cut(s) | 636 |
| BcnI | CCSGG | 1 cut(s) | 404 |
| BcoDI | GTCTC | 2 cut(s) | 93, 198 |
| BfaI | CTAG | 3 cut(s) | 309, 578, 596 |
| BfrI | CTTAAG | 1 cut(s) | 365 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 197 |
| Bme1390I | CCNGG | 2 cut(s) | 404, 694 |
| Bme18I | GGWCC | 2 cut(s) | 146, 251 |
| BmgBI | CACGTC | 1 cut(s) | 494 |
| BmgT120I | GGNCC | 2 cut(s) | 146, 251 |
| BmrFI | CCNGG | 2 cut(s) | 404, 694 |
| BpiI | GAAGAC | 2 cut(s) | 344, 548 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BpuMI | CCSGG | 1 cut(s) | 404 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 169, 420 |
| Bse1I | ACTGG | 1 cut(s) | 586 |
| BseBI | CCWGG | 1 cut(s) | 694 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 169, 420 |
| BseMII | CTCAG | 3 cut(s) | 12, 54, 648 |
| BseNI | ACTGG | 1 cut(s) | 586 |
| BsiSI | CCGG | 1 cut(s) | 404 |
| BslFI | GGGAC | 1 cut(s) | 384 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 169, 420 |
| BsmAI | GTCTC | 2 cut(s) | 93, 198 |
| BsmFI | GGGAC | 1 cut(s) | 384 |
| Bsp143I | GATC | 3 cut(s) | 7, 534, 636 |
| BspCNI | CTCAG | 3 cut(s) | 13, 53, 649 |
| BspHI | TCATGA | 1 cut(s) | 388 |
| BspPI | GGATC | 2 cut(s) | 2, 529 |
| BspTI | CTTAAG | 1 cut(s) | 365 |
| BsrI | ACTGG | 1 cut(s) | 586 |
| BssMI | GATC | 3 cut(s) | 7, 534, 636 |
| BssSI | CACGAG | 1 cut(s) | 96 |
| Bst2BI | CACGAG | 1 cut(s) | 96 |
| Bst2UI | CCWGG | 1 cut(s) | 694 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 150, 255, 354, 415 |
| BstAFI | CTTAAG | 1 cut(s) | 365 |
| BstDEI | CTNAG | 4 cut(s) | 21, 40, 657, 720 |
| BstHHI | GCGC | 1 cut(s) | 483 |
| BstKTI | GATC | 3 cut(s) | 10, 537, 639 |
| BstMAI | GTCTC | 2 cut(s) | 93, 198 |
| BstMBI | GATC | 3 cut(s) | 7, 534, 636 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 197 |
| BstNI | CCWGG | 1 cut(s) | 694 |
| BstSCI | CCNGG | 2 cut(s) | 402, 692 |
| BstV2I | GAAGAC | 2 cut(s) | 344, 548 |
| BtrI | CACGTC | 1 cut(s) | 494 |
| BtsI | GCAGTG | 2 cut(s) | 105, 210 |
| BtsIMutI | CAGTG | 5 cut(s) | 105, 126, 210, 231, 425 |
| CciI | TCATGA | 1 cut(s) | 388 |
| CfoI | GCGC | 1 cut(s) | 483 |
| Cfr13I | GGNCC | 2 cut(s) | 146, 251 |
| Csp6I | GTAC | 3 cut(s) | 55, 160, 601 |
| CviAII | CATG | 1 cut(s) | 389 |
| CviJI | RGCY | 5 cut(s) | 5, 312, 595, 656, 697 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 312, 595, 656, 697 |
| CviQI | GTAC | 3 cut(s) | 55, 160, 601 |
| DdeI | CTNAG | 4 cut(s) | 21, 40, 657, 720 |
| DpnI | GATC | 3 cut(s) | 9, 536, 638 |
| DpnII | GATC | 3 cut(s) | 7, 534, 636 |
| Eco47I | GGWCC | 2 cut(s) | 146, 251 |
| Eco57I | CTGAAG | 2 cut(s) | 314, 549 |
| EcoRII | CCWGG | 1 cut(s) | 692 |
| FaeI | CATG | 1 cut(s) | 392 |
| FaiI | YATR | 8 cut(s) | 300, 390, 447, 476, 505, 575, 591, 666 |
| FaqI | GGGAC | 1 cut(s) | 384 |
| FatI | CATG | 1 cut(s) | 388 |
| FbaI | TGATCA | 1 cut(s) | 636 |
| FspBI | CTAG | 3 cut(s) | 309, 578, 596 |
| GlaI | GCGC | 1 cut(s) | 482 |
| HapII | CCGG | 1 cut(s) | 404 |
| HhaI | GCGC | 1 cut(s) | 483 |
| Hin1II | CATG | 1 cut(s) | 392 |
| Hin6I | GCGC | 1 cut(s) | 481 |
| HinP1I | GCGC | 1 cut(s) | 481 |
| HinfI | GANTC | 5 cut(s) | 38, 305, 359, 544, 615 |
| HpaII | CCGG | 1 cut(s) | 404 |
| HphI | GGTGA | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 73, 154, 178, 259 |
| Hpy188III | TCNNGA | 2 cut(s) | 389, 538 |
| HpyAV | CCTTC | 2 cut(s) | 338, 634 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 150, 255, 354, 415 |
| HpyCH4IV | ACGT | 2 cut(s) | 373, 493 |
| HpyCH4V | TGCA | 1 cut(s) | 649 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 197 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 40, 657, 720 |
| HpySE526I | ACGT | 2 cut(s) | 373, 493 |
| Hsp92II | CATG | 1 cut(s) | 392 |
| HspAI | GCGC | 1 cut(s) | 481 |
| Ksp22I | TGATCA | 1 cut(s) | 636 |
| Kzo9I | GATC | 3 cut(s) | 7, 534, 636 |
| LmnI | GCTCC | 1 cut(s) | 405 |
| LpnPI | CCDG | 7 cut(s) | 33, 304, 417, 551, 599, 679, 706 |
| MaeI | CTAG | 3 cut(s) | 309, 578, 596 |
| MaeII | ACGT | 2 cut(s) | 373, 493 |
| MalI | GATC | 3 cut(s) | 9, 536, 638 |
| MboI | GATC | 3 cut(s) | 7, 534, 636 |
| MboII | GAAGA | 3 cut(s) | 349, 536, 553 |
| MluCI | AATT | 3 cut(s) | 499, 570, 714 |
| MlyI | GAGTC | 2 cut(s) | 32, 538 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 3 cut(s) | 443, 654, 664 |
| MseI | TTAA | 3 cut(s) | 281, 290, 366 |
| MspCI | CTTAAG | 1 cut(s) | 365 |
| MspI | CCGG | 1 cut(s) | 404 |
| MspR9I | CCNGG | 2 cut(s) | 404, 694 |
| MvaI | CCWGG | 1 cut(s) | 694 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 197 |
| NciI | CCSGG | 1 cut(s) | 404 |
| NdeII | GATC | 3 cut(s) | 7, 534, 636 |
| NlaIII | CATG | 1 cut(s) | 392 |
| PagI | TCATGA | 1 cut(s) | 388 |
| PfeI | GAWTC | 3 cut(s) | 305, 359, 615 |
| PfoI | TCCNGGA | 1 cut(s) | 402 |
| PleI | GAGTC | 2 cut(s) | 32, 538 |
| PpsI | GAGTC | 2 cut(s) | 32, 538 |
| Psp6I | CCWGG | 1 cut(s) | 692 |
| PspGI | CCWGG | 1 cut(s) | 692 |
| PspPI | GGNCC | 2 cut(s) | 146, 251 |
| RsaI | GTAC | 3 cut(s) | 56, 161, 602 |
| RsaNI | GTAC | 3 cut(s) | 55, 160, 601 |
| SaqAI | TTAA | 3 cut(s) | 281, 290, 366 |
| Sau3AI | GATC | 3 cut(s) | 7, 534, 636 |
| Sau96I | GGNCC | 2 cut(s) | 146, 251 |
| SchI | GAGTC | 2 cut(s) | 32, 538 |
| ScrFI | CCNGG | 2 cut(s) | 404, 694 |
| SetI | ASST | 8 cut(s) | 22, 267, 330, 376, 496, 626, 645, 675 |
| SinI | GGWCC | 2 cut(s) | 146, 251 |
| SmlI | CTYRAG | 2 cut(s) | 50, 365 |
| SmoI | CTYRAG | 2 cut(s) | 50, 365 |
| Sse9I | AATT | 3 cut(s) | 499, 570, 714 |
| SspMI | CTAG | 3 cut(s) | 309, 578, 596 |
| StyD4I | CCNGG | 2 cut(s) | 402, 692 |
| TaaI | ACNGT | 5 cut(s) | 62, 150, 255, 354, 415 |
| TaiI | ACGT | 2 cut(s) | 376, 496 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 3 cut(s) | 499, 570, 714 |
| TfiI | GAWTC | 3 cut(s) | 305, 359, 615 |
| Tru1I | TTAA | 3 cut(s) | 281, 290, 366 |
| Tru9I | TTAA | 3 cut(s) | 281, 290, 366 |
| TscAI | CASTG | 5 cut(s) | 112, 133, 217, 238, 425 |
| TspDTI | ATGAA | 2 cut(s) | 377, 441 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 5 cut(s) | 112, 133, 217, 238, 425 |
| Vha464I | CTTAAG | 1 cut(s) | 365 |
| VpaK11BI | GGWCC | 2 cut(s) | 146, 251 |
| XapI | RAATTY | 2 cut(s) | 499, 714 |
| XspI | CTAG | 3 cut(s) | 309, 578, 596 |