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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 947 |
| AatII | GACGTC | 1 cut(s) | 951 |
| Acc36I | ACCTGC | 1 cut(s) | 143 |
| AccII | CGCG | 2 cut(s) | 56, 71 |
| AciI | CCGC | 6 cut(s) | 34, 69, 83, 155, 258, 523 |
| AclWI | GGATC | 5 cut(s) | 158, 242, 484, 761, 822 |
| AcoI | YGGCCR | 2 cut(s) | 3, 156 |
| AcsI | RAATTY | 1 cut(s) | 696 |
| AcvI | CACGTG | 2 cut(s) | 779, 797 |
| AcyI | GRCGYC | 1 cut(s) | 948 |
| AdeI | CACNNNGTG | 1 cut(s) | 797 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 20, 338, 747 |
| AflIII | ACRYGT | 1 cut(s) | 564 |
| AgsI | TTSAA | 2 cut(s) | 427, 556 |
| AjiI | CACGTC | 1 cut(s) | 584 |
| AjnI | CCWGG | 1 cut(s) | 493 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 489, 521 |
| AluBI | AGCT | 2 cut(s) | 230, 659 |
| AluI | AGCT | 2 cut(s) | 230, 659 |
| Alw26I | GTCTC | 1 cut(s) | 590 |
| AlwI | GGATC | 5 cut(s) | 158, 242, 484, 761, 822 |
| Ama87I | CYCGRG | 2 cut(s) | 414, 701 |
| AoxI | GGCC | 5 cut(s) | 3, 11, 156, 191, 417 |
| ApeKI | GCWGC | 9 cut(s) | 58, 109, 112, 115, 138, 209, 212, 287, 872 |
| ApoI | RAATTY | 1 cut(s) | 696 |
| AseI | ATTAAT | 1 cut(s) | 389 |
| AspLEI | GCGC | 3 cut(s) | 58, 173, 573 |
| AspS9I | GGNCC | 1 cut(s) | 417 |
| AsuC2I | CCSGG | 2 cut(s) | 415, 416 |
| AvaI | CYCGRG | 2 cut(s) | 414, 701 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BauI | CACGAG | 2 cut(s) | 7, 220 |
| BbrPI | CACGTG | 2 cut(s) | 779, 797 |
| BbsI | GAAGAC | 2 cut(s) | 360, 434 |
| BbvI | GCAGC | 9 cut(s) | 45, 96, 99, 127, 150, 221, 224, 299, 884 |
| BccI | CCATC | 4 cut(s) | 112, 188, 302, 650 |
| BciT130I | CCWGG | 1 cut(s) | 495 |
| BcnI | CCSGG | 2 cut(s) | 415, 416 |
| BcoDI | GTCTC | 1 cut(s) | 590 |
| BfaI | CTAG | 3 cut(s) | 152, 668, 944 |
| BfmI | CTRYAG | 3 cut(s) | 113, 136, 862 |
| BfuAI | ACCTGC | 1 cut(s) | 143 |
| BlpI | GCTNAGC | 1 cut(s) | 78 |
| Bme1390I | CCNGG | 3 cut(s) | 415, 416, 495 |
| BmeT110I | CYCGRG | 2 cut(s) | 414, 701 |
| BmgBI | CACGTC | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 1 cut(s) | 417 |
| BmrFI | CCNGG | 3 cut(s) | 415, 416, 495 |
| BmrI | ACTGGG | 1 cut(s) | 693 |
| BmsI | GCATC | 3 cut(s) | 182, 439, 994 |
| BmuI | ACTGGG | 1 cut(s) | 693 |
| BpiI | GAAGAC | 2 cut(s) | 360, 434 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 214, 246 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 1 cut(s) | 216 |
| BpuMI | CCSGG | 2 cut(s) | 415, 416 |
| BsaAI | YACGTR | 2 cut(s) | 779, 797 |
| BsaHI | GRCGYC | 1 cut(s) | 948 |
| BsaJI | CCNNGG | 4 cut(s) | 14, 414, 493, 702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 20, 338, 747 |
| Bse118I | RCCGGY | 1 cut(s) | 126 |
| Bse1I | ACTGG | 1 cut(s) | 688 |
| BseBI | CCWGG | 1 cut(s) | 495 |
| BseDI | CCNNGG | 4 cut(s) | 14, 414, 493, 702 |
| BseGI | GGATG | 3 cut(s) | 180, 454, 1009 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 20, 338, 747 |
| BseNI | ACTGG | 1 cut(s) | 688 |
| BseRI | GAGGAG | 1 cut(s) | 186 |
| BseXI | GCAGC | 9 cut(s) | 45, 96, 99, 127, 150, 221, 224, 299, 884 |
| BseYI | CCCAGC | 3 cut(s) | 122, 167, 226 |
| Bsh1236I | CGCG | 2 cut(s) | 56, 71 |
| BshFI | GGCC | 5 cut(s) | 5, 13, 158, 193, 419 |
| BsiHKCI | CYCGRG | 2 cut(s) | 414, 701 |
| BsiSI | CCGG | 3 cut(s) | 127, 190, 415 |
| BslFI | GGGAC | 2 cut(s) | 700, 819 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 20, 338, 747 |
| BsmAI | GTCTC | 1 cut(s) | 590 |
| BsmBI | CGTCTC | 1 cut(s) | 590 |
| BsmFI | GGGAC | 2 cut(s) | 700, 819 |
| BsnI | GGCC | 5 cut(s) | 5, 13, 158, 193, 419 |
| BsoBI | CYCGRG | 2 cut(s) | 414, 701 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 78 |
| BspACI | CCGC | 6 cut(s) | 34, 69, 83, 155, 258, 523 |
| BspANI | GGCC | 5 cut(s) | 5, 13, 158, 193, 419 |
| BspFNI | CGCG | 2 cut(s) | 56, 71 |
| BspHI | TCATGA | 1 cut(s) | 937 |
| BspMAI | CTGCAG | 2 cut(s) | 117, 140 |
| BspMI | ACCTGC | 1 cut(s) | 143 |
| BspPI | GGATC | 5 cut(s) | 158, 242, 484, 761, 822 |
| BsrFI | RCCGGY | 1 cut(s) | 126 |
| BsrI | ACTGG | 1 cut(s) | 688 |
| BssAI | RCCGGY | 1 cut(s) | 126 |
| BssECI | CCNNGG | 4 cut(s) | 14, 414, 493, 702 |
| BssMI | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| BssNI | GRCGYC | 1 cut(s) | 948 |
| BssSI | CACGAG | 2 cut(s) | 7, 220 |
| BssT1I | CCWWGG | 1 cut(s) | 14 |
| Bst2BI | CACGAG | 2 cut(s) | 7, 220 |
| Bst2UI | CCWGG | 1 cut(s) | 495 |
| Bst4CI | ACNGT | 3 cut(s) | 444, 505, 961 |
| BstACI | GRCGYC | 1 cut(s) | 948 |
| BstBAI | YACGTR | 2 cut(s) | 779, 797 |
| BstC8I | GCNNGC | 3 cut(s) | 34, 87, 128 |
| BstDEI | CTNAG | 2 cut(s) | 78, 993 |
| BstF5I | GGATG | 3 cut(s) | 180, 454, 1009 |
| BstFNI | CGCG | 2 cut(s) | 56, 71 |
| BstHHI | GCGC | 3 cut(s) | 58, 173, 573 |
| BstKTI | GATC | 8 cut(s) | 29, 166, 238, 250, 492, 627, 769, 817 |
| BstMAI | GTCTC | 1 cut(s) | 590 |
| BstMBI | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 115, 287 |
| BstNI | CCWGG | 1 cut(s) | 495 |
| BstNSI | RCATGY | 1 cut(s) | 568 |
| BstSCI | CCNGG | 3 cut(s) | 413, 414, 493 |
| BstSFI | CTRYAG | 3 cut(s) | 113, 136, 862 |
| BstUI | CGCG | 2 cut(s) | 56, 71 |
| BstV1I | GCAGC | 9 cut(s) | 45, 96, 99, 127, 150, 221, 224, 299, 884 |
| BstV2I | GAAGAC | 2 cut(s) | 360, 434 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 683 |
| BsuRI | GGCC | 5 cut(s) | 5, 13, 158, 193, 419 |
| BtgZI | GCGATG | 2 cut(s) | 90, 159 |
| BtrI | CACGTC | 1 cut(s) | 584 |
| BtsCI | GGATG | 3 cut(s) | 180, 454, 1009 |
| BtsIMutI | CAGTG | 3 cut(s) | 440, 515, 681 |
| BveI | ACCTGC | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 3 cut(s) | 34, 87, 128 |
| CciI | TCATGA | 1 cut(s) | 937 |
| CfoI | GCGC | 3 cut(s) | 58, 173, 573 |
| Cfr10I | RCCGGY | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 1 cut(s) | 417 |
| Cfr9I | CCCGGG | 1 cut(s) | 414 |
| CseI | GACGC | 3 cut(s) | 60, 293, 365 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 577, 612 |
| CviAII | CATG | 5 cut(s) | 565, 809, 818, 858, 938 |
| DdeI | CTNAG | 2 cut(s) | 78, 993 |
| DpnI | GATC | 8 cut(s) | 28, 165, 237, 249, 491, 626, 768, 816 |
| DpnII | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| DraIII | CACNNNGTG | 1 cut(s) | 797 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 947 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 947 |
| EaeI | YGGCCR | 2 cut(s) | 3, 156 |
| Eco130I | CCWWGG | 1 cut(s) | 14 |
| Eco147I | AGGCCT | 1 cut(s) | 13 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| Eco72I | CACGTG | 2 cut(s) | 779, 797 |
| Eco88I | CYCGRG | 2 cut(s) | 414, 701 |
| EcoRII | CCWGG | 1 cut(s) | 493 |
| EcoT14I | CCWWGG | 1 cut(s) | 14 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 14 |
| Esp3I | CGTCTC | 1 cut(s) | 590 |
| FaeI | CATG | 5 cut(s) | 568, 812, 821, 861, 941 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 972, 1004 |
| FaqI | GGGAC | 2 cut(s) | 700, 819 |
| FatI | CATG | 5 cut(s) | 564, 808, 817, 857, 937 |
| FauI | CCCGC | 1 cut(s) | 41 |
| FokI | GGATG | 3 cut(s) | 167, 461, 1016 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| FspBI | CTAG | 3 cut(s) | 152, 668, 944 |
| GlaI | GCGC | 3 cut(s) | 57, 172, 572 |
| GsaI | CCCAGC | 3 cut(s) | 126, 171, 230 |
| HaeIII | GGCC | 5 cut(s) | 5, 13, 158, 193, 419 |
| HapII | CCGG | 3 cut(s) | 127, 190, 415 |
| HgaI | GACGC | 3 cut(s) | 60, 293, 365 |
| HhaI | GCGC | 3 cut(s) | 58, 173, 573 |
| Hin1I | GRCGYC | 1 cut(s) | 948 |
| Hin1II | CATG | 5 cut(s) | 568, 812, 821, 861, 941 |
| Hin6I | GCGC | 3 cut(s) | 56, 171, 571 |
| HinP1I | GCGC | 3 cut(s) | 56, 171, 571 |
| HincII | GTYRAC | 2 cut(s) | 847, 952 |
| HindII | GTYRAC | 2 cut(s) | 847, 952 |
| HinfI | GANTC | 4 cut(s) | 519, 634, 896, 968 |
| HpaII | CCGG | 3 cut(s) | 127, 190, 415 |
| Hpy166II | GTNNAC | 2 cut(s) | 847, 952 |
| Hpy188III | TCNNGA | 6 cut(s) | 21, 233, 479, 701, 938, 1016 |
| Hpy8I | GTNNAC | 2 cut(s) | 847, 952 |
| Hpy99I | CGWCG | 1 cut(s) | 287 |
| HpyAV | CCTTC | 5 cut(s) | 253, 332, 362, 594, 923 |
| HpyCH4III | ACNGT | 3 cut(s) | 444, 505, 961 |
| HpyCH4IV | ACGT | 5 cut(s) | 463, 583, 778, 796, 948 |
| HpyCH4V | TGCA | 8 cut(s) | 89, 115, 138, 209, 300, 746, 791, 965 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 115, 287 |
| HpyF3I | CTNAG | 2 cut(s) | 78, 993 |
| HpySE526I | ACGT | 5 cut(s) | 463, 583, 778, 796, 948 |
| Hsp92I | GRCGYC | 1 cut(s) | 948 |
| Hsp92II | CATG | 5 cut(s) | 568, 812, 821, 861, 941 |
| HspAI | GCGC | 3 cut(s) | 56, 171, 571 |
| KroI | GCCGGC | 1 cut(s) | 126 |
| KroNI | GCCGGC | 1 cut(s) | 128 |
| Kzo9I | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| LmnI | GCTCC | 1 cut(s) | 372 |
| Lsp1109I | GCAGC | 9 cut(s) | 45, 96, 99, 127, 150, 221, 224, 299, 884 |
| LweI | GCATC | 3 cut(s) | 182, 439, 994 |
| MaeI | CTAG | 3 cut(s) | 152, 668, 944 |
| MaeII | ACGT | 5 cut(s) | 463, 583, 778, 796, 948 |
| MaeIII | GTNAC | 2 cut(s) | 313, 734 |
| MalI | GATC | 8 cut(s) | 28, 165, 237, 249, 491, 626, 768, 816 |
| MboI | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| MboII | GAAGA | 6 cut(s) | 365, 374, 377, 439, 626, 938 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 7 cut(s) | 386, 422, 589, 652, 696, 709, 877 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 628, 905, 962 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroNI | GCCGGC | 1 cut(s) | 126 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 389, 456, 575 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 3 cut(s) | 127, 190, 415 |
| MspR9I | CCNGG | 3 cut(s) | 415, 416, 495 |
| MvaI | CCWGG | 1 cut(s) | 495 |
| MvnI | CGCG | 2 cut(s) | 56, 71 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 115, 287 |
| NaeI | GCCGGC | 1 cut(s) | 128 |
| NciI | CCSGG | 2 cut(s) | 415, 416 |
| NdeII | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| NgoMIV | GCCGGC | 1 cut(s) | 126 |
| NlaIII | CATG | 5 cut(s) | 568, 812, 821, 861, 941 |
| NspI | RCATGY | 1 cut(s) | 568 |
| PagI | TCATGA | 1 cut(s) | 937 |
| PceI | AGGCCT | 1 cut(s) | 13 |
| PciI | ACATGT | 1 cut(s) | 564 |
| PdiI | GCCGGC | 1 cut(s) | 128 |
| PfeI | GAWTC | 1 cut(s) | 519 |
| PleI | GAGTC | 3 cut(s) | 628, 904, 962 |
| PmaCI | CACGTG | 2 cut(s) | 779, 797 |
| PmlI | CACGTG | 2 cut(s) | 779, 797 |
| PpsI | GAGTC | 3 cut(s) | 628, 904, 962 |
| Ppu21I | YACGTR | 2 cut(s) | 779, 797 |
| PscI | ACATGT | 1 cut(s) | 564 |
| PshBI | ATTAAT | 1 cut(s) | 389 |
| Psp6I | CCWGG | 1 cut(s) | 493 |
| PspCI | CACGTG | 2 cut(s) | 779, 797 |
| PspFI | CCCAGC | 3 cut(s) | 122, 167, 226 |
| PspGI | CCWGG | 1 cut(s) | 493 |
| PspPI | GGNCC | 1 cut(s) | 417 |
| PstI | CTGCAG | 2 cut(s) | 117, 140 |
| SaqAI | TTAA | 3 cut(s) | 389, 456, 575 |
| Sau3AI | GATC | 8 cut(s) | 26, 163, 235, 247, 489, 624, 766, 814 |
| Sau96I | GGNCC | 1 cut(s) | 417 |
| SchI | GAGTC | 3 cut(s) | 628, 905, 962 |
| ScrFI | CCNGG | 3 cut(s) | 415, 416, 495 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SfaNI | GCATC | 3 cut(s) | 182, 439, 994 |
| SfcI | CTRYAG | 3 cut(s) | 113, 136, 862 |
| SmaI | CCCGGG | 1 cut(s) | 416 |
| SmlI | CTYRAG | 1 cut(s) | 231 |
| SmoI | CTYRAG | 1 cut(s) | 231 |
| Sse9I | AATT | 7 cut(s) | 386, 422, 589, 652, 696, 709, 877 |
| SseBI | AGGCCT | 1 cut(s) | 13 |
| SsiI | CCGC | 6 cut(s) | 34, 69, 83, 155, 258, 523 |
| SspMI | CTAG | 3 cut(s) | 152, 668, 944 |
| StuI | AGGCCT | 1 cut(s) | 13 |
| StyD4I | CCNGG | 3 cut(s) | 413, 414, 493 |
| StyI | CCWWGG | 1 cut(s) | 14 |
| TaaI | ACNGT | 3 cut(s) | 444, 505, 961 |
| TaiI | ACGT | 5 cut(s) | 466, 586, 781, 799, 951 |
| TaqI | TCGA | 3 cut(s) | 238, 246, 410 |
| TasI | AATT | 7 cut(s) | 386, 422, 589, 652, 696, 709, 877 |
| TauI | GCSGC | 2 cut(s) | 85, 158 |
| TfiI | GAWTC | 1 cut(s) | 519 |
| Tru1I | TTAA | 3 cut(s) | 389, 456, 575 |
| Tru9I | TTAA | 3 cut(s) | 389, 456, 575 |
| TscAI | CASTG | 3 cut(s) | 447, 515, 688 |
| TseI | GCWGC | 9 cut(s) | 58, 109, 112, 115, 138, 209, 212, 287, 872 |
| TspDTI | ATGAA | 2 cut(s) | 737, 867 |
| TspMI | CCCGGG | 1 cut(s) | 414 |
| TspRI | CASTG | 3 cut(s) | 447, 515, 688 |
| VspI | ATTAAT | 1 cut(s) | 389 |
| XapI | RAATTY | 1 cut(s) | 696 |
| XceI | RCATGY | 1 cut(s) | 568 |
| XmaI | CCCGGG | 1 cut(s) | 414 |
| XspI | CTAG | 3 cut(s) | 152, 668, 944 |
| ZraI | GACGTC | 1 cut(s) | 949 |