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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 534, 575 |
| Acc16I | TGCGCA | 2 cut(s) | 551, 571 |
| Acc36I | ACCTGC | 2 cut(s) | 534, 575 |
| AccBSI | CCGCTC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 605 |
| AciI | CCGC | 8 cut(s) | 14, 178, 346, 427, 544, 603, 700, 892 |
| AclWI | GGATC | 2 cut(s) | 208, 713 |
| AcoI | YGGCCR | 1 cut(s) | 286 |
| AcsI | RAATTY | 1 cut(s) | 734 |
| AcuI | CTGAAG | 1 cut(s) | 953 |
| AfaI | GTAC | 1 cut(s) | 767 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 442, 775, 916 |
| AflII | CTTAAG | 1 cut(s) | 962 |
| AgsI | TTSAA | 3 cut(s) | 131, 687, 707 |
| AjiI | CACGTC | 1 cut(s) | 304 |
| AjnI | CCWGG | 1 cut(s) | 107 |
| AluBI | AGCT | 3 cut(s) | 127, 134, 415 |
| AluI | AGCT | 3 cut(s) | 127, 134, 415 |
| Alw21I | GWGCWC | 1 cut(s) | 282 |
| AlwI | GGATC | 2 cut(s) | 208, 713 |
| AoxI | GGCC | 2 cut(s) | 286, 397 |
| ApeKI | GCWGC | 7 cut(s) | 372, 572, 611, 614, 631, 649, 694 |
| ApoI | RAATTY | 1 cut(s) | 734 |
| AspLEI | GCGC | 3 cut(s) | 552, 572, 607 |
| AspS9I | GGNCC | 1 cut(s) | 268 |
| AsuHPI | GGTGA | 1 cut(s) | 614 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| BaeGI | GKGCMC | 1 cut(s) | 666 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 749, 782 |
| BalI | TGGCCA | 1 cut(s) | 288 |
| BanII | GRGCYC | 1 cut(s) | 108 |
| BbsI | GAAGAC | 1 cut(s) | 941 |
| Bbv12I | GWGCWC | 1 cut(s) | 282 |
| BbvCI | CCTCAGC | 1 cut(s) | 536 |
| BbvI | GCAGC | 7 cut(s) | 384, 584, 623, 626, 636, 643, 706 |
| BccI | CCATC | 3 cut(s) | 232, 662, 859 |
| BceAI | ACGGC | 1 cut(s) | 302 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 800, 834 |
| BciT130I | CCWGG | 1 cut(s) | 109 |
| BfaI | CTAG | 1 cut(s) | 906 |
| BfmI | CTRYAG | 1 cut(s) | 609 |
| BfrI | CTTAAG | 1 cut(s) | 962 |
| BfuAI | ACCTGC | 2 cut(s) | 534, 575 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 803 |
| BisI | GCNGC | 9 cut(s) | 347, 373, 573, 612, 615, 632, 650, 695, 893 |
| BlsI | GCNGC | 9 cut(s) | 348, 374, 574, 613, 616, 633, 651, 696, 894 |
| Bme1390I | CCNGG | 1 cut(s) | 109 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmgBI | CACGTC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 1 cut(s) | 268 |
| BmiI | GGNNCC | 3 cut(s) | 270, 465, 484 |
| BmrFI | CCNGG | 1 cut(s) | 109 |
| BmsI | GCATC | 3 cut(s) | 47, 358, 589 |
| BpiI | GAAGAC | 1 cut(s) | 941 |
| Bpu10I | CCTNAGC | 1 cut(s) | 536 |
| BpuEI | CTTGAG | 2 cut(s) | 65, 782 |
| BsaJI | CCNNGG | 3 cut(s) | 75, 107, 117 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 448, 478 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 442, 775, 916 |
| Bse118I | RCCGGY | 1 cut(s) | 460 |
| Bse1I | ACTGG | 1 cut(s) | 400 |
| BseBI | CCWGG | 1 cut(s) | 109 |
| BseDI | CCNNGG | 3 cut(s) | 75, 107, 117 |
| BseGI | GGATG | 3 cut(s) | 349, 654, 974 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 442, 775, 916 |
| BseMII | CTCAG | 4 cut(s) | 356, 550, 765, 878 |
| BseNI | ACTGG | 1 cut(s) | 400 |
| BseSI | GKGCMC | 1 cut(s) | 666 |
| BseXI | GCAGC | 7 cut(s) | 384, 584, 623, 626, 636, 643, 706 |
| BseYI | CCCAGC | 5 cut(s) | 364, 380, 576, 595, 915 |
| Bsh1236I | CGCG | 1 cut(s) | 605 |
| BshFI | GGCC | 2 cut(s) | 288, 399 |
| BsiHKAI | GWGCWC | 1 cut(s) | 282 |
| BsiSI | CCGG | 1 cut(s) | 461 |
| BslFI | GGGAC | 4 cut(s) | 93, 206, 347, 458 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 442, 775, 916 |
| BsmFI | GGGAC | 4 cut(s) | 93, 206, 347, 458 |
| BsmI | GAATGC | 1 cut(s) | 961 |
| BsnI | GGCC | 2 cut(s) | 288, 399 |
| Bsp1286I | GDGCHC | 3 cut(s) | 108, 282, 666 |
| Bsp143I | GATC | 3 cut(s) | 213, 438, 718 |
| BspACI | CCGC | 8 cut(s) | 14, 178, 346, 427, 544, 603, 700, 892 |
| BspANI | GGCC | 2 cut(s) | 288, 399 |
| BspCNI | CTCAG | 4 cut(s) | 355, 549, 764, 879 |
| BspFNI | CGCG | 1 cut(s) | 605 |
| BspHI | TCATGA | 1 cut(s) | 984 |
| BspLI | GGNNCC | 3 cut(s) | 270, 465, 484 |
| BspMAI | CTGCAG | 1 cut(s) | 613 |
| BspMI | ACCTGC | 2 cut(s) | 534, 575 |
| BspPI | GGATC | 2 cut(s) | 208, 713 |
| BspTI | CTTAAG | 1 cut(s) | 962 |
| BsrBI | CCGCTC | 1 cut(s) | 429 |
| BsrFI | RCCGGY | 1 cut(s) | 460 |
| BsrI | ACTGG | 1 cut(s) | 400 |
| BssAI | RCCGGY | 1 cut(s) | 460 |
| BssECI | CCNNGG | 3 cut(s) | 75, 107, 117 |
| BssMI | GATC | 3 cut(s) | 213, 438, 718 |
| BssT1I | CCWWGG | 2 cut(s) | 75, 117 |
| Bst2UI | CCWGG | 1 cut(s) | 109 |
| Bst4CI | ACNGT | 3 cut(s) | 361, 773, 951 |
| BstAFI | CTTAAG | 1 cut(s) | 962 |
| BstDEI | CTNAG | 4 cut(s) | 342, 536, 751, 887 |
| BstF5I | GGATG | 3 cut(s) | 349, 654, 974 |
| BstFNI | CGCG | 1 cut(s) | 605 |
| BstHHI | GCGC | 3 cut(s) | 552, 572, 607 |
| BstKTI | GATC | 3 cut(s) | 216, 441, 721 |
| BstMBI | GATC | 3 cut(s) | 213, 438, 718 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 112, 314, 381, 504, 513, 611, 803 |
| BstNI | CCWGG | 1 cut(s) | 109 |
| BstSCI | CCNGG | 1 cut(s) | 107 |
| BstSFI | CTRYAG | 1 cut(s) | 609 |
| BstSLI | GKGCMC | 1 cut(s) | 666 |
| BstUI | CGCG | 1 cut(s) | 605 |
| BstV1I | GCAGC | 7 cut(s) | 384, 584, 623, 626, 636, 643, 706 |
| BstV2I | GAAGAC | 1 cut(s) | 941 |
| BsuRI | GGCC | 2 cut(s) | 288, 399 |
| BtgZI | GCGATG | 1 cut(s) | 575 |
| BtrI | CACGTC | 1 cut(s) | 304 |
| BtsCI | GGATG | 3 cut(s) | 349, 654, 974 |
| BtsI | GCAGTG | 1 cut(s) | 816 |
| BtsIMutI | CAGTG | 1 cut(s) | 816 |
| BveI | ACCTGC | 2 cut(s) | 534, 575 |
| CciI | TCATGA | 1 cut(s) | 984 |
| CfoI | GCGC | 3 cut(s) | 552, 572, 607 |
| Cfr10I | RCCGGY | 1 cut(s) | 460 |
| Cfr13I | GGNCC | 1 cut(s) | 268 |
| Csp6I | GTAC | 1 cut(s) | 766 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 285, 320 |
| CviAII | CATG | 1 cut(s) | 985 |
| CviQI | GTAC | 1 cut(s) | 766 |
| DdeI | CTNAG | 4 cut(s) | 342, 536, 751, 887 |
| DpnI | GATC | 3 cut(s) | 215, 440, 720 |
| DpnII | GATC | 3 cut(s) | 213, 438, 718 |
| EaeI | YGGCCR | 1 cut(s) | 286 |
| Eco130I | CCWWGG | 2 cut(s) | 75, 117 |
| Eco24I | GRGCYC | 1 cut(s) | 108 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco57I | CTGAAG | 1 cut(s) | 953 |
| EcoO109I | RGGNCCY | 1 cut(s) | 268 |
| EcoRII | CCWGG | 1 cut(s) | 107 |
| EcoT14I | CCWWGG | 2 cut(s) | 75, 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 108 |
| ErhI | CCWWGG | 2 cut(s) | 75, 117 |
| FaeI | CATG | 1 cut(s) | 988 |
| FaqI | GGGAC | 4 cut(s) | 93, 206, 347, 458 |
| FatI | CATG | 1 cut(s) | 984 |
| FauI | CCCGC | 4 cut(s) | 171, 434, 610, 707 |
| FauNDI | CATATG | 2 cut(s) | 204, 489 |
| Fnu4HI | GCNGC | 9 cut(s) | 347, 373, 573, 612, 615, 632, 650, 695, 893 |
| FokI | GGATG | 3 cut(s) | 336, 641, 981 |
| FriOI | GRGCYC | 1 cut(s) | 108 |
| Fsp4HI | GCNGC | 9 cut(s) | 347, 373, 573, 612, 615, 632, 650, 695, 893 |
| FspBI | CTAG | 1 cut(s) | 906 |
| FspI | TGCGCA | 2 cut(s) | 551, 571 |
| GlaI | GCGC | 3 cut(s) | 551, 571, 606 |
| GluI | GCNGC | 9 cut(s) | 347, 373, 573, 612, 615, 632, 650, 695, 893 |
| GsaI | CCCAGC | 5 cut(s) | 368, 384, 580, 599, 919 |
| HaeIII | GGCC | 2 cut(s) | 288, 399 |
| HapII | CCGG | 1 cut(s) | 461 |
| HhaI | GCGC | 3 cut(s) | 552, 572, 607 |
| Hin1II | CATG | 1 cut(s) | 988 |
| Hin6I | GCGC | 3 cut(s) | 550, 570, 605 |
| HinP1I | GCGC | 3 cut(s) | 550, 570, 605 |
| HinfI | GANTC | 1 cut(s) | 749 |
| HpaII | CCGG | 1 cut(s) | 461 |
| HphI | GGTGA | 1 cut(s) | 614 |
| Hpy188I | TCNGA | 3 cut(s) | 754, 784, 888 |
| Hpy188III | TCNNGA | 5 cut(s) | 30, 266, 421, 436, 985 |
| HpyAV | CCTTC | 3 cut(s) | 629, 693, 713 |
| HpyCH4III | ACNGT | 3 cut(s) | 361, 773, 951 |
| HpyCH4IV | ACGT | 1 cut(s) | 303 |
| HpyCH4V | TGCA | 8 cut(s) | 313, 395, 450, 493, 507, 529, 611, 694 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 112, 314, 381, 504, 513, 611, 803 |
| HpyF3I | CTNAG | 4 cut(s) | 342, 536, 751, 887 |
| HpySE526I | ACGT | 1 cut(s) | 303 |
| Hsp92II | CATG | 1 cut(s) | 988 |
| HspAI | GCGC | 3 cut(s) | 550, 570, 605 |
| Kzo9I | GATC | 3 cut(s) | 213, 438, 718 |
| LmnI | GCTCC | 2 cut(s) | 329, 469 |
| Lsp1109I | GCAGC | 7 cut(s) | 384, 584, 623, 626, 636, 643, 706 |
| LweI | GCATC | 3 cut(s) | 47, 358, 589 |
| MaeI | CTAG | 1 cut(s) | 906 |
| MaeII | ACGT | 1 cut(s) | 303 |
| MaeIII | GTNAC | 2 cut(s) | 149, 299 |
| MalI | GATC | 3 cut(s) | 215, 440, 720 |
| MbiI | CCGCTC | 1 cut(s) | 429 |
| MboI | GATC | 3 cut(s) | 213, 438, 718 |
| MboII | GAAGA | 2 cut(s) | 268, 946 |
| MhlI | GDGCHC | 3 cut(s) | 108, 282, 666 |
| MlsI | TGGCCA | 1 cut(s) | 288 |
| MluCI | AATT | 2 cut(s) | 162, 734 |
| MluNI | TGGCCA | 1 cut(s) | 288 |
| MlyI | GAGTC | 1 cut(s) | 743 |
| MmeI | TCCRAC | 1 cut(s) | 746 |
| MnlI | CCTC | 8 cut(s) | 26, 58, 90, 135, 201, 339, 545, 882 |
| Mox20I | TGGCCA | 1 cut(s) | 288 |
| MscI | TGGCCA | 1 cut(s) | 288 |
| MseI | TTAA | 3 cut(s) | 165, 878, 963 |
| MslI | CAYNNNNRTG | 1 cut(s) | 659 |
| Msp20I | TGGCCA | 1 cut(s) | 288 |
| MspA1I | CMGCKG | 1 cut(s) | 346 |
| MspCI | CTTAAG | 1 cut(s) | 962 |
| MspI | CCGG | 1 cut(s) | 461 |
| MspR9I | CCNGG | 1 cut(s) | 109 |
| Mva1269I | GAATGC | 1 cut(s) | 961 |
| MvaI | CCWGG | 1 cut(s) | 109 |
| MvnI | CGCG | 1 cut(s) | 605 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 112, 314, 381, 504, 513, 611, 803 |
| NdeI | CATATG | 2 cut(s) | 204, 489 |
| NdeII | GATC | 3 cut(s) | 213, 438, 718 |
| NlaIII | CATG | 1 cut(s) | 988 |
| NlaIV | GGNNCC | 3 cut(s) | 270, 465, 484 |
| NmeAIII | GCCGAG | 2 cut(s) | 30, 86 |
| NmuCI | GTSAC | 2 cut(s) | 149, 299 |
| NsbI | TGCGCA | 2 cut(s) | 551, 571 |
| PagI | TCATGA | 1 cut(s) | 984 |
| PaqCI | CACCTGC | 2 cut(s) | 534, 575 |
| PctI | GAATGC | 1 cut(s) | 961 |
| PflFI | GACNNNGTC | 1 cut(s) | 155 |
| PkrI | GCNGC | 9 cut(s) | 348, 374, 574, 613, 616, 633, 651, 696, 894 |
| PleI | GAGTC | 1 cut(s) | 743 |
| PpsI | GAGTC | 1 cut(s) | 743 |
| PpuMI | RGGWCCY | 1 cut(s) | 268 |
| Psp5II | RGGWCCY | 1 cut(s) | 268 |
| Psp6I | CCWGG | 1 cut(s) | 107 |
| PspFI | CCCAGC | 5 cut(s) | 364, 380, 576, 595, 915 |
| PspGI | CCWGG | 1 cut(s) | 107 |
| PspN4I | GGNNCC | 3 cut(s) | 270, 465, 484 |
| PspPI | GGNCC | 1 cut(s) | 268 |
| PspPPI | RGGWCCY | 1 cut(s) | 268 |
| PstI | CTGCAG | 1 cut(s) | 613 |
| PsyI | GACNNNGTC | 1 cut(s) | 155 |
| RsaI | GTAC | 1 cut(s) | 767 |
| RsaNI | GTAC | 1 cut(s) | 766 |
| RseI | CAYNNNNRTG | 1 cut(s) | 659 |
| SaqAI | TTAA | 3 cut(s) | 165, 878, 963 |
| SatI | GCNGC | 9 cut(s) | 347, 373, 573, 612, 615, 632, 650, 695, 893 |
| Sau3AI | GATC | 3 cut(s) | 213, 438, 718 |
| Sau96I | GGNCC | 1 cut(s) | 268 |
| SchI | GAGTC | 1 cut(s) | 743 |
| ScrFI | CCNGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 3 cut(s) | 108, 282, 666 |
| SfaNI | GCATC | 3 cut(s) | 47, 358, 589 |
| SfcI | CTRYAG | 1 cut(s) | 609 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 659 |
| SmlI | CTYRAG | 3 cut(s) | 44, 761, 962 |
| SmoI | CTYRAG | 3 cut(s) | 44, 761, 962 |
| Sse9I | AATT | 2 cut(s) | 162, 734 |
| SsiI | CCGC | 8 cut(s) | 14, 178, 346, 427, 544, 603, 700, 892 |
| SspI | AATATT | 2 cut(s) | 882, 981 |
| SspMI | CTAG | 1 cut(s) | 906 |
| StyD4I | CCNGG | 1 cut(s) | 107 |
| StyI | CCWWGG | 2 cut(s) | 75, 117 |
| TaaI | ACNGT | 3 cut(s) | 361, 773, 951 |
| TaiI | ACGT | 1 cut(s) | 306 |
| TaqI | TCGA | 3 cut(s) | 170, 405, 727 |
| TasI | AATT | 2 cut(s) | 162, 734 |
| TauI | GCSGC | 2 cut(s) | 349, 895 |
| Tru1I | TTAA | 3 cut(s) | 165, 878, 963 |
| Tru9I | TTAA | 3 cut(s) | 165, 878, 963 |
| TscAI | CASTG | 1 cut(s) | 823 |
| TseFI | GTSAC | 2 cut(s) | 149, 299 |
| TseI | GCWGC | 7 cut(s) | 372, 572, 611, 614, 631, 649, 694 |
| Tsp45I | GTSAC | 2 cut(s) | 149, 299 |
| TspDTI | ATGAA | 5 cut(s) | 191, 861, 878, 973, 1001 |
| TspGWI | ACGGA | 2 cut(s) | 456, 771 |
| TspRI | CASTG | 1 cut(s) | 823 |
| Tth111I | GACNNNGTC | 1 cut(s) | 155 |
| Vha464I | CTTAAG | 1 cut(s) | 962 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XapI | RAATTY | 1 cut(s) | 734 |
| XspI | CTAG | 1 cut(s) | 906 |