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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 711, 986 |
| AccB1I | GGYRCC | 2 cut(s) | 485, 802 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 747 |
| AclWI | GGATC | 3 cut(s) | 179, 409, 659 |
| AcsI | RAATTY | 3 cut(s) | 19, 379, 594 |
| AcuI | CTGAAG | 4 cut(s) | 194, 429, 801, 1032 |
| AdeI | CACNNNGTG | 1 cut(s) | 695 |
| AfaI | GTAC | 2 cut(s) | 52, 881 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 199, 300, 747 |
| AflIII | ACRYGT | 1 cut(s) | 354 |
| AgsI | TTSAA | 4 cut(s) | 217, 346, 508, 1012 |
| AjiI | CACGTC | 3 cut(s) | 374, 659, 707 |
| AjnI | CCWGG | 1 cut(s) | 572 |
| AlwI | GGATC | 3 cut(s) | 179, 409, 659 |
| AoxI | GGCC | 4 cut(s) | 575, 724, 733, 973 |
| ApeKI | GCWGC | 1 cut(s) | 911 |
| ApoI | RAATTY | 3 cut(s) | 19, 379, 594 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 207 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AspS9I | GGNCC | 3 cut(s) | 131, 576, 734 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| AvaII | GGWCC | 1 cut(s) | 131 |
| BaeGI | GKGCMC | 1 cut(s) | 805 |
| BanI | GGYRCC | 2 cut(s) | 485, 802 |
| BbsI | GAAGAC | 2 cut(s) | 224, 428 |
| BbvI | GCAGC | 1 cut(s) | 923 |
| BccI | CCATC | 1 cut(s) | 122 |
| BceAI | ACGGC | 1 cut(s) | 711 |
| BciT130I | CCWGG | 1 cut(s) | 574 |
| BclI | TGATCA | 1 cut(s) | 516 |
| BfaI | CTAG | 3 cut(s) | 189, 458, 774 |
| BfmI | CTRYAG | 1 cut(s) | 853 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 732 |
| BisI | GCNGC | 1 cut(s) | 912 |
| BlsI | GCNGC | 1 cut(s) | 913 |
| Bme1390I | CCNGG | 1 cut(s) | 574 |
| Bme18I | GGWCC | 1 cut(s) | 131 |
| BmgBI | CACGTC | 3 cut(s) | 374, 659, 707 |
| BmgT120I | GGNCC | 3 cut(s) | 131, 576, 734 |
| BmiI | GGNNCC | 2 cut(s) | 487, 804 |
| BmrFI | CCNGG | 1 cut(s) | 574 |
| BmsI | GCATC | 3 cut(s) | 108, 229, 1033 |
| BpiI | GAAGAC | 2 cut(s) | 224, 428 |
| BpmI | CTGGAG | 1 cut(s) | 497 |
| BsaJI | CCNNGG | 2 cut(s) | 600, 727 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 199, 300, 747 |
| Bse1I | ACTGG | 1 cut(s) | 466 |
| Bse3DI | GCAATG | 1 cut(s) | 847 |
| BseBI | CCWGG | 1 cut(s) | 574 |
| BseDI | CCNNGG | 2 cut(s) | 600, 727 |
| BseGI | GGATG | 2 cut(s) | 244, 1048 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 199, 300, 747 |
| BseMI | GCAATG | 1 cut(s) | 847 |
| BseMII | CTCAG | 4 cut(s) | 50, 161, 766, 1046 |
| BseNI | ACTGG | 1 cut(s) | 466 |
| BseSI | GKGCMC | 1 cut(s) | 805 |
| BseXI | GCAGC | 1 cut(s) | 923 |
| BseYI | CCCAGC | 1 cut(s) | 198 |
| BshFI | GGCC | 4 cut(s) | 577, 726, 735, 975 |
| BshNI | GGYRCC | 2 cut(s) | 485, 802 |
| BslFI | GGGAC | 3 cut(s) | 264, 598, 717 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 199, 300, 747 |
| BsmFI | GGGAC | 3 cut(s) | 264, 598, 717 |
| BsnI | GGCC | 4 cut(s) | 577, 726, 735, 975 |
| Bsp1286I | GDGCHC | 1 cut(s) | 805 |
| Bsp143I | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| BspANI | GGCC | 4 cut(s) | 577, 726, 735, 975 |
| BspCNI | CTCAG | 4 cut(s) | 49, 162, 765, 1045 |
| BspHI | TCATGA | 1 cut(s) | 268 |
| BspLI | GGNNCC | 2 cut(s) | 487, 804 |
| BspPI | GGATC | 3 cut(s) | 179, 409, 659 |
| BspT107I | GGYRCC | 2 cut(s) | 485, 802 |
| BsrDI | GCAATG | 1 cut(s) | 847 |
| BsrI | ACTGG | 1 cut(s) | 466 |
| BssECI | CCNNGG | 2 cut(s) | 600, 727 |
| BssMI | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| Bst2UI | CCWGG | 1 cut(s) | 574 |
| Bst4CI | ACNGT | 3 cut(s) | 135, 234, 295 |
| BstC8I | GCNNGC | 3 cut(s) | 97, 769, 898 |
| BstDEI | CTNAG | 5 cut(s) | 36, 170, 752, 807, 1032 |
| BstDSI | CCRYGG | 1 cut(s) | 727 |
| BstF5I | GGATG | 2 cut(s) | 244, 1048 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 5 cut(s) | 6, 187, 417, 519, 667 |
| BstMBI | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 732 |
| BstNI | CCWGG | 1 cut(s) | 574 |
| BstNSI | RCATGY | 1 cut(s) | 358 |
| BstSCI | CCNGG | 1 cut(s) | 572 |
| BstSFI | CTRYAG | 1 cut(s) | 853 |
| BstSLI | GKGCMC | 1 cut(s) | 805 |
| BstV1I | GCAGC | 1 cut(s) | 923 |
| BstV2I | GAAGAC | 2 cut(s) | 224, 428 |
| BsuRI | GGCC | 4 cut(s) | 577, 726, 735, 975 |
| BtgI | CCRYGG | 1 cut(s) | 727 |
| BtrI | CACGTC | 3 cut(s) | 374, 659, 707 |
| BtsCI | GGATG | 2 cut(s) | 244, 1048 |
| BtsI | GCAGTG | 1 cut(s) | 90 |
| BtsIMutI | CAGTG | 3 cut(s) | 90, 111, 305 |
| Cac8I | GCNNGC | 3 cut(s) | 97, 769, 898 |
| CciI | TCATGA | 1 cut(s) | 268 |
| CfoI | GCGC | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 3 cut(s) | 131, 576, 734 |
| Csp6I | GTAC | 2 cut(s) | 51, 880 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 688, 723 |
| CviAII | CATG | 7 cut(s) | 269, 355, 677, 693, 782, 849, 977 |
| CviQI | GTAC | 2 cut(s) | 51, 880 |
| DdeI | CTNAG | 5 cut(s) | 36, 170, 752, 807, 1032 |
| DpnI | GATC | 5 cut(s) | 5, 186, 416, 518, 666 |
| DpnII | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| DraIII | CACNNNGTG | 1 cut(s) | 695 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 711, 986 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 711, 986 |
| Eco47I | GGWCC | 1 cut(s) | 131 |
| Eco57I | CTGAAG | 4 cut(s) | 194, 429, 801, 1032 |
| EcoO109I | RGGNCCY | 1 cut(s) | 734 |
| EcoRII | CCWGG | 1 cut(s) | 572 |
| FaeI | CATG | 7 cut(s) | 272, 358, 680, 696, 785, 852, 980 |
| FaqI | GGGAC | 3 cut(s) | 264, 598, 717 |
| FatI | CATG | 7 cut(s) | 268, 354, 676, 692, 781, 848, 976 |
| FbaI | TGATCA | 1 cut(s) | 516 |
| Fnu4HI | GCNGC | 1 cut(s) | 912 |
| FokI | GGATG | 2 cut(s) | 251, 1055 |
| Fsp4HI | GCNGC | 1 cut(s) | 912 |
| FspBI | CTAG | 3 cut(s) | 189, 458, 774 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GluI | GCNGC | 1 cut(s) | 912 |
| GsaI | CCCAGC | 1 cut(s) | 202 |
| GsuI | CTGGAG | 1 cut(s) | 497 |
| HaeIII | GGCC | 4 cut(s) | 577, 726, 735, 975 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 7 cut(s) | 272, 358, 680, 696, 785, 852, 980 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HincII | GTYRAC | 1 cut(s) | 991 |
| HindII | GTYRAC | 1 cut(s) | 991 |
| HinfI | GANTC | 4 cut(s) | 34, 424, 495, 935 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 1 cut(s) | 991 |
| Hpy188I | TCNGA | 6 cut(s) | 39, 139, 171, 601, 755, 1051 |
| Hpy188III | TCNNGA | 2 cut(s) | 269, 418 |
| Hpy8I | GTNNAC | 1 cut(s) | 991 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 5 cut(s) | 34, 218, 514, 825, 962 |
| HpyCH4III | ACNGT | 3 cut(s) | 135, 234, 295 |
| HpyCH4IV | ACGT | 5 cut(s) | 60, 253, 373, 658, 706 |
| HpyCH4V | TGCA | 5 cut(s) | 529, 644, 689, 796, 1004 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 732 |
| HpyF3I | CTNAG | 5 cut(s) | 36, 170, 752, 807, 1032 |
| HpySE526I | ACGT | 5 cut(s) | 60, 253, 373, 658, 706 |
| Hsp92II | CATG | 7 cut(s) | 272, 358, 680, 696, 785, 852, 980 |
| HspAI | GCGC | 1 cut(s) | 361 |
| Ksp22I | TGATCA | 1 cut(s) | 516 |
| Kzo9I | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| LmnI | GCTCC | 1 cut(s) | 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 923 |
| LweI | GCATC | 3 cut(s) | 108, 229, 1033 |
| MaeI | CTAG | 3 cut(s) | 189, 458, 774 |
| MaeII | ACGT | 5 cut(s) | 60, 253, 373, 658, 706 |
| MalI | GATC | 5 cut(s) | 5, 186, 416, 518, 666 |
| MboI | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| MboII | GAAGA | 4 cut(s) | 229, 416, 433, 977 |
| MfeI | CAATTG | 1 cut(s) | 999 |
| MhlI | GDGCHC | 1 cut(s) | 805 |
| MluCI | AATT | 7 cut(s) | 19, 379, 450, 594, 607, 916, 999 |
| MlyI | GAGTC | 3 cut(s) | 28, 418, 944 |
| MmeI | TCCRAC | 2 cut(s) | 31, 634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 207 |
| MseI | TTAA | 2 cut(s) | 161, 246 |
| MspR9I | CCNGG | 1 cut(s) | 574 |
| MunI | CAATTG | 1 cut(s) | 999 |
| MvaI | CCWGG | 1 cut(s) | 574 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 732 |
| NdeII | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| NlaIII | CATG | 7 cut(s) | 272, 358, 680, 696, 785, 852, 980 |
| NlaIV | GGNNCC | 2 cut(s) | 487, 804 |
| NspI | RCATGY | 1 cut(s) | 358 |
| PagI | TCATGA | 1 cut(s) | 268 |
| PciI | ACATGT | 1 cut(s) | 354 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 712 |
| PdmI | GAANNNNTTC | 1 cut(s) | 207 |
| PfeI | GAWTC | 1 cut(s) | 495 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 747 |
| PkrI | GCNGC | 1 cut(s) | 913 |
| PleI | GAGTC | 3 cut(s) | 28, 418, 943 |
| PpsI | GAGTC | 3 cut(s) | 28, 418, 943 |
| PscI | ACATGT | 1 cut(s) | 354 |
| Psp6I | CCWGG | 1 cut(s) | 572 |
| PspFI | CCCAGC | 1 cut(s) | 198 |
| PspGI | CCWGG | 1 cut(s) | 572 |
| PspN4I | GGNNCC | 2 cut(s) | 487, 804 |
| PspPI | GGNCC | 3 cut(s) | 131, 576, 734 |
| RsaI | GTAC | 2 cut(s) | 52, 881 |
| RsaNI | GTAC | 2 cut(s) | 51, 880 |
| SaqAI | TTAA | 2 cut(s) | 161, 246 |
| SatI | GCNGC | 1 cut(s) | 912 |
| Sau3AI | GATC | 5 cut(s) | 3, 184, 414, 516, 664 |
| Sau96I | GGNCC | 3 cut(s) | 131, 576, 734 |
| SchI | GAGTC | 3 cut(s) | 28, 418, 944 |
| ScrFI | CCNGG | 1 cut(s) | 574 |
| SduI | GDGCHC | 1 cut(s) | 805 |
| SfaNI | GCATC | 3 cut(s) | 108, 229, 1033 |
| SfcI | CTRYAG | 1 cut(s) | 853 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 732 |
| SinI | GGWCC | 1 cut(s) | 131 |
| Sse9I | AATT | 7 cut(s) | 19, 379, 450, 594, 607, 916, 999 |
| SspMI | CTAG | 3 cut(s) | 189, 458, 774 |
| StyD4I | CCNGG | 1 cut(s) | 572 |
| TaaI | ACNGT | 3 cut(s) | 135, 234, 295 |
| TaiI | ACGT | 5 cut(s) | 63, 256, 376, 661, 709 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TasI | AATT | 7 cut(s) | 19, 379, 450, 594, 607, 916, 999 |
| TfiI | GAWTC | 1 cut(s) | 495 |
| Tru1I | TTAA | 2 cut(s) | 161, 246 |
| Tru9I | TTAA | 2 cut(s) | 161, 246 |
| TscAI | CASTG | 3 cut(s) | 97, 118, 305 |
| TseI | GCWGC | 1 cut(s) | 911 |
| TspDTI | ATGAA | 2 cut(s) | 257, 321 |
| TspRI | CASTG | 3 cut(s) | 97, 118, 305 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 747 |
| VpaK11BI | GGWCC | 1 cut(s) | 131 |
| XapI | RAATTY | 3 cut(s) | 19, 379, 594 |
| XceI | RCATGY | 1 cut(s) | 358 |
| XmnI | GAANNNNTTC | 1 cut(s) | 207 |
| XspI | CTAG | 3 cut(s) | 189, 458, 774 |