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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 218 |
| Acc36I | ACCTGC | 1 cut(s) | 218 |
| AccII | CGCG | 2 cut(s) | 57, 244 |
| AciI | CCGC | 4 cut(s) | 55, 73, 79, 598 |
| AclWI | GGATC | 3 cut(s) | 281, 464, 944 |
| AcsI | RAATTY | 1 cut(s) | 879 |
| AcuI | CTGAAG | 1 cut(s) | 479 |
| AcvI | CACGTG | 1 cut(s) | 980 |
| AdeI | CACNNNGTG | 1 cut(s) | 980 |
| AfaI | GTAC | 2 cut(s) | 335, 491 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 343, 484 |
| AflIII | ACRYGT | 1 cut(s) | 639 |
| AgsI | TTSAA | 4 cut(s) | 502, 631, 793, 847 |
| AhlI | ACTAGT | 1 cut(s) | 742 |
| AjiI | CACGTC | 1 cut(s) | 659 |
| AjnI | CCWGG | 1 cut(s) | 857 |
| AluBI | AGCT | 3 cut(s) | 62, 578, 734 |
| AluI | AGCT | 3 cut(s) | 62, 578, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 120 |
| Alw26I | GTCTC | 2 cut(s) | 665, 820 |
| AlwI | GGATC | 3 cut(s) | 281, 464, 944 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 48 |
| Ama87I | CYCGRG | 1 cut(s) | 884 |
| AoxI | GGCC | 3 cut(s) | 96, 155, 860 |
| ApeKI | GCWGC | 4 cut(s) | 42, 62, 127, 146 |
| ApoI | RAATTY | 1 cut(s) | 879 |
| AspLEI | GCGC | 2 cut(s) | 42, 648 |
| AspS9I | GGNCC | 1 cut(s) | 861 |
| AsuC2I | CCSGG | 1 cut(s) | 173 |
| AsuHPI | GGTGA | 3 cut(s) | 59, 442, 923 |
| AvaI | CYCGRG | 1 cut(s) | 884 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 317, 350 |
| BbrPI | CACGTG | 1 cut(s) | 980 |
| BbsI | GAAGAC | 2 cut(s) | 245, 509 |
| Bbv12I | GWGCWC | 1 cut(s) | 120 |
| BbvI | GCAGC | 4 cut(s) | 49, 54, 133, 139 |
| BccI | CCATC | 2 cut(s) | 274, 345 |
| BciT130I | CCWGG | 1 cut(s) | 859 |
| BcnI | CCSGG | 1 cut(s) | 173 |
| BcoDI | GTCTC | 2 cut(s) | 665, 820 |
| BcuI | ACTAGT | 1 cut(s) | 742 |
| BfaI | CTAG | 5 cut(s) | 12, 474, 575, 743, 867 |
| BfmI | CTRYAG | 3 cut(s) | 83, 147, 226 |
| BfuAI | ACCTGC | 1 cut(s) | 218 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 371 |
| BisI | GCNGC | 4 cut(s) | 43, 63, 128, 147 |
| BlsI | GCNGC | 4 cut(s) | 44, 64, 129, 148 |
| Bme1390I | CCNGG | 2 cut(s) | 173, 859 |
| BmeT110I | CYCGRG | 1 cut(s) | 884 |
| BmgBI | CACGTC | 1 cut(s) | 659 |
| BmgT120I | GGNCC | 1 cut(s) | 861 |
| BmrFI | CCNGG | 2 cut(s) | 173, 859 |
| BmsI | GCATC | 3 cut(s) | 17, 430, 514 |
| BoxI | GACNNNNGTC | 1 cut(s) | 199 |
| BpiI | GAAGAC | 2 cut(s) | 245, 509 |
| BpuEI | CTTGAG | 1 cut(s) | 350 |
| BpuMI | CCSGG | 1 cut(s) | 173 |
| BsaAI | YACGTR | 1 cut(s) | 980 |
| BsaJI | CCNNGG | 2 cut(s) | 510, 885 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 343, 484 |
| Bse118I | RCCGGY | 2 cut(s) | 94, 153 |
| Bse1I | ACTGG | 1 cut(s) | 751 |
| BseBI | CCWGG | 1 cut(s) | 859 |
| BseDI | CCNNGG | 2 cut(s) | 510, 885 |
| BseGI | GGATG | 3 cut(s) | 104, 163, 529 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 343, 484 |
| BseMII | CTCAG | 4 cut(s) | 189, 333, 446, 813 |
| BseNI | ACTGG | 1 cut(s) | 751 |
| BseXI | GCAGC | 4 cut(s) | 49, 54, 133, 139 |
| BseYI | CCCAGC | 2 cut(s) | 36, 483 |
| Bsh1236I | CGCG | 2 cut(s) | 57, 244 |
| BshFI | GGCC | 3 cut(s) | 98, 157, 862 |
| BsiHKAI | GWGCWC | 1 cut(s) | 120 |
| BsiHKCI | CYCGRG | 1 cut(s) | 884 |
| BsiSI | CCGG | 3 cut(s) | 95, 154, 173 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 343, 484 |
| BsmAI | GTCTC | 2 cut(s) | 665, 820 |
| BsmBI | CGTCTC | 1 cut(s) | 665 |
| BsnI | GGCC | 3 cut(s) | 98, 157, 862 |
| BsoBI | CYCGRG | 1 cut(s) | 884 |
| Bsp1286I | GDGCHC | 1 cut(s) | 120 |
| Bsp143I | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| BspACI | CCGC | 4 cut(s) | 55, 73, 79, 598 |
| BspANI | GGCC | 3 cut(s) | 98, 157, 862 |
| BspCNI | CTCAG | 4 cut(s) | 190, 332, 447, 814 |
| BspFNI | CGCG | 2 cut(s) | 57, 244 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspMI | ACCTGC | 1 cut(s) | 218 |
| BspPI | GGATC | 3 cut(s) | 281, 464, 944 |
| BsrFI | RCCGGY | 2 cut(s) | 94, 153 |
| BsrI | ACTGG | 1 cut(s) | 751 |
| BssAI | RCCGGY | 2 cut(s) | 94, 153 |
| BssECI | CCNNGG | 2 cut(s) | 510, 885 |
| BssMI | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 1 cut(s) | 859 |
| Bst6I | CTCTTC | 1 cut(s) | 241 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 48 |
| BstBAI | YACGTR | 1 cut(s) | 980 |
| BstC8I | GCNNGC | 1 cut(s) | 602 |
| BstDEI | CTNAG | 4 cut(s) | 198, 319, 455, 822 |
| BstF5I | GGATG | 3 cut(s) | 104, 163, 529 |
| BstFNI | CGCG | 2 cut(s) | 57, 244 |
| BstHHI | GCGC | 2 cut(s) | 42, 648 |
| BstKTI | GATC | 6 cut(s) | 32, 113, 289, 472, 702, 952 |
| BstMAI | GTCTC | 2 cut(s) | 665, 820 |
| BstMBI | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 21, 48, 124, 133, 371 |
| BstNI | CCWGG | 1 cut(s) | 859 |
| BstNSI | RCATGY | 2 cut(s) | 643, 947 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 199 |
| BstSCI | CCNGG | 2 cut(s) | 171, 857 |
| BstSFI | CTRYAG | 3 cut(s) | 83, 147, 226 |
| BstUI | CGCG | 2 cut(s) | 57, 244 |
| BstV1I | GCAGC | 4 cut(s) | 49, 54, 133, 139 |
| BstV2I | GAAGAC | 2 cut(s) | 245, 509 |
| BsuRI | GGCC | 3 cut(s) | 98, 157, 862 |
| BtrI | CACGTC | 1 cut(s) | 659 |
| BtsCI | GGATG | 3 cut(s) | 104, 163, 529 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 2 cut(s) | 384, 590 |
| BveI | ACCTGC | 1 cut(s) | 218 |
| Cac8I | GCNNGC | 1 cut(s) | 602 |
| CaiI | CAGNNNCTG | 1 cut(s) | 48 |
| CciI | TCATGA | 1 cut(s) | 553 |
| CfoI | GCGC | 2 cut(s) | 42, 648 |
| Cfr10I | RCCGGY | 2 cut(s) | 94, 153 |
| Cfr13I | GGNCC | 1 cut(s) | 861 |
| CseI | GACGC | 3 cut(s) | 14, 191, 250 |
| Csp6I | GTAC | 2 cut(s) | 334, 490 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 652, 687 |
| CviAII | CATG | 4 cut(s) | 554, 640, 944, 960 |
| CviQI | GTAC | 2 cut(s) | 334, 490 |
| DdeI | CTNAG | 4 cut(s) | 198, 319, 455, 822 |
| DpnI | GATC | 6 cut(s) | 31, 112, 288, 471, 701, 951 |
| DpnII | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| DraIII | CACNNNGTG | 1 cut(s) | 980 |
| Eam1104I | CTCTTC | 1 cut(s) | 241 |
| EarI | CTCTTC | 1 cut(s) | 241 |
| EciI | GGCGGA | 2 cut(s) | 62, 68 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco57I | CTGAAG | 1 cut(s) | 479 |
| Eco72I | CACGTG | 1 cut(s) | 980 |
| Eco88I | CYCGRG | 1 cut(s) | 884 |
| EcoRII | CCWGG | 1 cut(s) | 857 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| Esp3I | CGTCTC | 1 cut(s) | 665 |
| FaeI | CATG | 4 cut(s) | 557, 643, 947, 963 |
| FatI | CATG | 4 cut(s) | 553, 639, 943, 959 |
| Fnu4HI | GCNGC | 4 cut(s) | 43, 63, 128, 147 |
| FokI | GGATG | 3 cut(s) | 91, 150, 536 |
| Fsp4HI | GCNGC | 4 cut(s) | 43, 63, 128, 147 |
| FspBI | CTAG | 5 cut(s) | 12, 474, 575, 743, 867 |
| GlaI | GCGC | 2 cut(s) | 41, 647 |
| GluI | GCNGC | 4 cut(s) | 43, 63, 128, 147 |
| GsaI | CCCAGC | 2 cut(s) | 40, 487 |
| HaeIII | GGCC | 3 cut(s) | 98, 157, 862 |
| HapII | CCGG | 3 cut(s) | 95, 154, 173 |
| HgaI | GACGC | 3 cut(s) | 14, 191, 250 |
| HhaI | GCGC | 2 cut(s) | 42, 648 |
| Hin1II | CATG | 4 cut(s) | 557, 643, 947, 963 |
| Hin6I | GCGC | 2 cut(s) | 40, 646 |
| HinP1I | GCGC | 2 cut(s) | 40, 646 |
| HinfI | GANTC | 6 cut(s) | 200, 317, 594, 709, 780, 838 |
| HpaII | CCGG | 3 cut(s) | 95, 154, 173 |
| HphI | GGTGA | 3 cut(s) | 59, 442, 923 |
| Hpy166II | GTNNAC | 1 cut(s) | 748 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 352, 456 |
| Hpy188III | TCNNGA | 5 cut(s) | 108, 321, 554, 844, 884 |
| Hpy8I | GTNNAC | 1 cut(s) | 748 |
| Hpy99I | CGWCG | 1 cut(s) | 185 |
| HpyAV | CCTTC | 4 cut(s) | 35, 168, 503, 799 |
| HpyCH4IV | ACGT | 3 cut(s) | 538, 658, 979 |
| HpyCH4V | TGCA | 5 cut(s) | 149, 213, 814, 929, 974 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 21, 48, 124, 133, 371 |
| HpyF3I | CTNAG | 4 cut(s) | 198, 319, 455, 822 |
| HpySE526I | ACGT | 3 cut(s) | 538, 658, 979 |
| Hsp92II | CATG | 4 cut(s) | 557, 643, 947, 963 |
| HspAI | GCGC | 2 cut(s) | 40, 646 |
| Kzo9I | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| LmnI | GCTCC | 1 cut(s) | 115 |
| Lsp1109I | GCAGC | 4 cut(s) | 49, 54, 133, 139 |
| LweI | GCATC | 3 cut(s) | 17, 430, 514 |
| MaeI | CTAG | 5 cut(s) | 12, 474, 575, 743, 867 |
| MaeII | ACGT | 3 cut(s) | 538, 658, 979 |
| MalI | GATC | 6 cut(s) | 31, 112, 288, 471, 701, 951 |
| MboI | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| MboII | GAAGA | 8 cut(s) | 244, 247, 250, 258, 271, 289, 514, 701 |
| MhlI | GDGCHC | 1 cut(s) | 120 |
| MluCI | AATT | 5 cut(s) | 515, 664, 727, 879, 892 |
| MlyI | GAGTC | 3 cut(s) | 209, 311, 703 |
| MmeI | TCCRAC | 2 cut(s) | 314, 741 |
| MnlI | CCTC | 7 cut(s) | 80, 86, 109, 152, 317, 450, 880 |
| MseI | TTAA | 3 cut(s) | 446, 531, 650 |
| MspI | CCGG | 3 cut(s) | 95, 154, 173 |
| MspR9I | CCNGG | 2 cut(s) | 173, 859 |
| MvaI | CCWGG | 1 cut(s) | 859 |
| MvnI | CGCG | 2 cut(s) | 57, 244 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 21, 48, 124, 133, 371 |
| NciI | CCSGG | 1 cut(s) | 173 |
| NdeII | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| NlaIII | CATG | 4 cut(s) | 557, 643, 947, 963 |
| NspI | RCATGY | 2 cut(s) | 643, 947 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PaqCI | CACCTGC | 1 cut(s) | 218 |
| PciI | ACATGT | 1 cut(s) | 639 |
| PfeI | GAWTC | 3 cut(s) | 594, 780, 838 |
| PkrI | GCNGC | 4 cut(s) | 44, 64, 129, 148 |
| PleI | GAGTC | 3 cut(s) | 208, 311, 703 |
| PmaCI | CACGTG | 1 cut(s) | 980 |
| PmlI | CACGTG | 1 cut(s) | 980 |
| PpsI | GAGTC | 3 cut(s) | 208, 311, 703 |
| Ppu21I | YACGTR | 1 cut(s) | 980 |
| PscI | ACATGT | 1 cut(s) | 639 |
| PshAI | GACNNNNGTC | 1 cut(s) | 199 |
| Psp6I | CCWGG | 1 cut(s) | 857 |
| PspCI | CACGTG | 1 cut(s) | 980 |
| PspFI | CCCAGC | 2 cut(s) | 36, 483 |
| PspGI | CCWGG | 1 cut(s) | 857 |
| PspPI | GGNCC | 1 cut(s) | 861 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 48 |
| RsaI | GTAC | 2 cut(s) | 335, 491 |
| RsaNI | GTAC | 2 cut(s) | 334, 490 |
| SaqAI | TTAA | 3 cut(s) | 446, 531, 650 |
| SatI | GCNGC | 4 cut(s) | 43, 63, 128, 147 |
| Sau3AI | GATC | 6 cut(s) | 29, 110, 286, 469, 699, 949 |
| Sau96I | GGNCC | 1 cut(s) | 861 |
| SchI | GAGTC | 3 cut(s) | 209, 311, 703 |
| ScrFI | CCNGG | 2 cut(s) | 173, 859 |
| SduI | GDGCHC | 1 cut(s) | 120 |
| SfaNI | GCATC | 3 cut(s) | 17, 430, 514 |
| SfcI | CTRYAG | 3 cut(s) | 83, 147, 226 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| SpeI | ACTAGT | 1 cut(s) | 742 |
| Sse9I | AATT | 5 cut(s) | 515, 664, 727, 879, 892 |
| SsiI | CCGC | 4 cut(s) | 55, 73, 79, 598 |
| SspMI | CTAG | 5 cut(s) | 12, 474, 575, 743, 867 |
| StyD4I | CCNGG | 2 cut(s) | 171, 857 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaiI | ACGT | 3 cut(s) | 541, 661, 982 |
| TaqI | TCGA | 3 cut(s) | 28, 187, 295 |
| TasI | AATT | 5 cut(s) | 515, 664, 727, 879, 892 |
| TfiI | GAWTC | 3 cut(s) | 594, 780, 838 |
| Tru1I | TTAA | 3 cut(s) | 446, 531, 650 |
| Tru9I | TTAA | 3 cut(s) | 446, 531, 650 |
| TscAI | CASTG | 2 cut(s) | 391, 590 |
| TseI | GCWGC | 4 cut(s) | 42, 62, 127, 146 |
| TspDTI | ATGAA | 4 cut(s) | 429, 542, 912, 920 |
| TspGWI | ACGGA | 1 cut(s) | 692 |
| TspRI | CASTG | 2 cut(s) | 391, 590 |
| XapI | RAATTY | 1 cut(s) | 879 |
| XceI | RCATGY | 2 cut(s) | 643, 947 |
| XspI | CTAG | 5 cut(s) | 12, 474, 575, 743, 867 |