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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 717 |
| AccB1I | GGYRCC | 1 cut(s) | 808 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 753 |
| AciI | CCGC | 2 cut(s) | 202, 319 |
| AclWI | GGATC | 3 cut(s) | 2, 415, 665 |
| AcsI | RAATTY | 2 cut(s) | 385, 600 |
| AcuI | CTGAAG | 3 cut(s) | 200, 435, 807 |
| AcvI | CACGTG | 2 cut(s) | 683, 701 |
| AdeI | CACNNNGTG | 1 cut(s) | 701 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AflIII | ACRYGT | 1 cut(s) | 664 |
| AgsI | TTSAA | 4 cut(s) | 223, 352, 514, 568 |
| AjiI | CACGTC | 1 cut(s) | 665 |
| AjnI | CCWGG | 1 cut(s) | 578 |
| AluBI | AGCT | 1 cut(s) | 520 |
| AluI | AGCT | 1 cut(s) | 520 |
| Alw21I | GWGCWC | 1 cut(s) | 697 |
| Alw26I | GTCTC | 1 cut(s) | 541 |
| Alw44I | GTGCAC | 1 cut(s) | 693 |
| AlwI | GGATC | 3 cut(s) | 2, 415, 665 |
| AoxI | GGCC | 3 cut(s) | 581, 739, 775 |
| ApaLI | GTGCAC | 1 cut(s) | 693 |
| ApoI | RAATTY | 2 cut(s) | 385, 600 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 3 cut(s) | 137, 740, 776 |
| AsuHPI | GGTGA | 1 cut(s) | 782 |
| AsuNHI | GCTAGC | 1 cut(s) | 194 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| AxyI | CCTNAGG | 1 cut(s) | 606 |
| BaeGI | GKGCMC | 2 cut(s) | 697, 811 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 808 |
| BbrPI | CACGTG | 2 cut(s) | 683, 701 |
| BbsI | GAAGAC | 2 cut(s) | 230, 434 |
| Bbv12I | GWGCWC | 1 cut(s) | 697 |
| BccI | CCATC | 2 cut(s) | 758, 767 |
| BciT130I | CCWGG | 1 cut(s) | 580 |
| BclI | TGATCA | 1 cut(s) | 522 |
| BcoDI | GTCTC | 1 cut(s) | 541 |
| BfaI | CTAG | 3 cut(s) | 195, 464, 780 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| Bme1390I | CCNGG | 1 cut(s) | 580 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmgBI | CACGTC | 1 cut(s) | 665 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 740, 776 |
| BmiI | GGNNCC | 1 cut(s) | 810 |
| BmrFI | CCNGG | 1 cut(s) | 580 |
| BmsI | GCATC | 2 cut(s) | 181, 235 |
| BmtI | GCTAGC | 1 cut(s) | 198 |
| BpiI | GAAGAC | 2 cut(s) | 230, 434 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 683, 701 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| Bse21I | CCTNAGG | 1 cut(s) | 606 |
| Bse3DI | GCAATG | 1 cut(s) | 281 |
| BseBI | CCWGG | 1 cut(s) | 580 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| BseMI | GCAATG | 1 cut(s) | 281 |
| BseMII | CTCAG | 4 cut(s) | 12, 54, 167, 597 |
| BseSI | GKGCMC | 2 cut(s) | 697, 811 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 3 cut(s) | 583, 741, 777 |
| BshNI | GGYRCC | 1 cut(s) | 808 |
| BsiHKAI | GWGCWC | 1 cut(s) | 697 |
| BslFI | GGGAC | 3 cut(s) | 270, 604, 723 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| BsmAI | GTCTC | 1 cut(s) | 541 |
| BsmFI | GGGAC | 3 cut(s) | 270, 604, 723 |
| BsnI | GGCC | 3 cut(s) | 583, 741, 777 |
| Bsp1286I | GDGCHC | 2 cut(s) | 697, 811 |
| Bsp143I | GATC | 4 cut(s) | 7, 420, 522, 670 |
| BspACI | CCGC | 2 cut(s) | 202, 319 |
| BspANI | GGCC | 3 cut(s) | 583, 741, 777 |
| BspCNI | CTCAG | 4 cut(s) | 13, 53, 168, 598 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 810 |
| BspOI | GCTAGC | 1 cut(s) | 198 |
| BspPI | GGATC | 3 cut(s) | 2, 415, 665 |
| BspT107I | GGYRCC | 1 cut(s) | 808 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BsrDI | GCAATG | 1 cut(s) | 281 |
| BssMI | GATC | 4 cut(s) | 7, 420, 522, 670 |
| Bst2UI | CCWGG | 1 cut(s) | 580 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 85, 141, 301, 692 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstBAI | YACGTR | 2 cut(s) | 683, 701 |
| BstC8I | GCNNGC | 1 cut(s) | 196 |
| BstDEI | CTNAG | 5 cut(s) | 21, 40, 176, 606, 813 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 4 cut(s) | 10, 423, 525, 673 |
| BstMAI | GTCTC | 1 cut(s) | 541 |
| BstMBI | GATC | 4 cut(s) | 7, 420, 522, 670 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 738 |
| BstNI | CCWGG | 1 cut(s) | 580 |
| BstSCI | CCNGG | 1 cut(s) | 578 |
| BstSLI | GKGCMC | 2 cut(s) | 697, 811 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 434 |
| Bsu36I | CCTNAGG | 1 cut(s) | 606 |
| BsuRI | GGCC | 3 cut(s) | 583, 741, 777 |
| BtrI | CACGTC | 1 cut(s) | 665 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 311, 697 |
| Cac8I | GCNNGC | 1 cut(s) | 196 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 740, 776 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 748, 783 |
| CviAII | CATG | 4 cut(s) | 275, 713, 722, 788 |
| CviJI | RGCY | 9 cut(s) | 5, 198, 481, 520, 583, 611, 732, 741, 777 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 198, 481, 520, 583, 611, 732, 741, 777 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 5 cut(s) | 21, 40, 176, 606, 813 |
| DpnI | GATC | 4 cut(s) | 9, 422, 524, 672 |
| DpnII | GATC | 4 cut(s) | 7, 420, 522, 670 |
| DraIII | CACNNNGTG | 1 cut(s) | 701 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 717 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 717 |
| Eco147I | AGGCCT | 1 cut(s) | 583 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 3 cut(s) | 200, 435, 807 |
| Eco72I | CACGTG | 2 cut(s) | 683, 701 |
| Eco81I | CCTNAGG | 1 cut(s) | 606 |
| EcoO109I | RGGNCCY | 1 cut(s) | 740 |
| EcoRII | CCWGG | 1 cut(s) | 578 |
| FaeI | CATG | 4 cut(s) | 278, 716, 725, 791 |
| FaqI | GGGAC | 3 cut(s) | 270, 604, 723 |
| FatI | CATG | 4 cut(s) | 274, 712, 721, 787 |
| FbaI | TGATCA | 1 cut(s) | 522 |
| FokI | GGATG | 1 cut(s) | 257 |
| FspBI | CTAG | 3 cut(s) | 195, 464, 780 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeIII | GGCC | 3 cut(s) | 583, 741, 777 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1II | CATG | 4 cut(s) | 278, 716, 725, 791 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HinfI | GANTC | 2 cut(s) | 38, 430 |
| HphI | GGTGA | 1 cut(s) | 782 |
| Hpy166II | GTNNAC | 2 cut(s) | 635, 695 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 177 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 424, 605 |
| Hpy8I | GTNNAC | 2 cut(s) | 635, 695 |
| HpyAV | CCTTC | 3 cut(s) | 224, 520, 831 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 85, 141, 301, 692 |
| HpyCH4IV | ACGT | 4 cut(s) | 259, 664, 682, 700 |
| HpyCH4V | TGCA | 4 cut(s) | 535, 650, 695, 802 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 738 |
| HpyF3I | CTNAG | 5 cut(s) | 21, 40, 176, 606, 813 |
| HpySE526I | ACGT | 4 cut(s) | 259, 664, 682, 700 |
| Hsp92II | CATG | 4 cut(s) | 278, 716, 725, 791 |
| HspAI | GCGC | 1 cut(s) | 367 |
| Ksp22I | TGATCA | 1 cut(s) | 522 |
| Kzo9I | GATC | 4 cut(s) | 7, 420, 522, 670 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| LpnPI | CCDG | 8 cut(s) | 33, 190, 303, 437, 467, 565, 592, 618 |
| LweI | GCATC | 2 cut(s) | 181, 235 |
| MaeI | CTAG | 3 cut(s) | 195, 464, 780 |
| MaeII | ACGT | 4 cut(s) | 259, 664, 682, 700 |
| MalI | GATC | 4 cut(s) | 9, 422, 524, 672 |
| MboI | GATC | 4 cut(s) | 7, 420, 522, 670 |
| MboII | GAAGA | 3 cut(s) | 235, 422, 439 |
| MhlI | GDGCHC | 2 cut(s) | 697, 811 |
| MluCI | AATT | 4 cut(s) | 385, 456, 600, 613 |
| MlyI | GAGTC | 2 cut(s) | 32, 424 |
| MmeI | TCCRAC | 2 cut(s) | 35, 640 |
| MnlI | CCTC | 6 cut(s) | 171, 209, 550, 601, 731, 753 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MseI | TTAA | 3 cut(s) | 167, 252, 341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 189, 762 |
| MspA1I | CMGCKG | 1 cut(s) | 204 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 1 cut(s) | 580 |
| MvaI | CCWGG | 1 cut(s) | 580 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 738 |
| NdeII | GATC | 4 cut(s) | 7, 420, 522, 670 |
| NheI | GCTAGC | 1 cut(s) | 194 |
| NlaIII | CATG | 4 cut(s) | 278, 716, 725, 791 |
| NlaIV | GGNNCC | 1 cut(s) | 810 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 1 cut(s) | 583 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 753 |
| PleI | GAGTC | 2 cut(s) | 32, 424 |
| PmaCI | CACGTG | 2 cut(s) | 683, 701 |
| PmlI | CACGTG | 2 cut(s) | 683, 701 |
| PpsI | GAGTC | 2 cut(s) | 32, 424 |
| Ppu21I | YACGTR | 2 cut(s) | 683, 701 |
| Psp6I | CCWGG | 1 cut(s) | 578 |
| PspCI | CACGTG | 2 cut(s) | 683, 701 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 578 |
| PspN4I | GGNNCC | 1 cut(s) | 810 |
| PspPI | GGNCC | 3 cut(s) | 137, 740, 776 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| RseI | CAYNNNNRTG | 2 cut(s) | 189, 762 |
| SaqAI | TTAA | 3 cut(s) | 167, 252, 341 |
| Sau3AI | GATC | 4 cut(s) | 7, 420, 522, 670 |
| Sau96I | GGNCC | 3 cut(s) | 137, 740, 776 |
| SchI | GAGTC | 2 cut(s) | 32, 424 |
| ScrFI | CCNGG | 1 cut(s) | 580 |
| SduI | GDGCHC | 2 cut(s) | 697, 811 |
| SfaNI | GCATC | 2 cut(s) | 181, 235 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 189, 762 |
| SmlI | CTYRAG | 2 cut(s) | 50, 251 |
| SmoI | CTYRAG | 2 cut(s) | 50, 251 |
| Sse9I | AATT | 4 cut(s) | 385, 456, 600, 613 |
| SseBI | AGGCCT | 1 cut(s) | 583 |
| SsiI | CCGC | 2 cut(s) | 202, 319 |
| SspMI | CTAG | 3 cut(s) | 195, 464, 780 |
| StuI | AGGCCT | 1 cut(s) | 583 |
| StyD4I | CCNGG | 1 cut(s) | 578 |
| TaaI | ACNGT | 5 cut(s) | 62, 85, 141, 301, 692 |
| TaiI | ACGT | 4 cut(s) | 262, 667, 685, 703 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 385, 456, 600, 613 |
| Tru1I | TTAA | 3 cut(s) | 167, 252, 341 |
| Tru9I | TTAA | 3 cut(s) | 167, 252, 341 |
| TscAI | CASTG | 3 cut(s) | 112, 311, 697 |
| TspDTI | ATGAA | 3 cut(s) | 167, 263, 327 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 3 cut(s) | 112, 311, 697 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 753 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VneI | GTGCAC | 1 cut(s) | 693 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 2 cut(s) | 385, 600 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| XspI | CTAG | 3 cut(s) | 195, 464, 780 |