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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 684 |
| AccB1I | GGYRCC | 1 cut(s) | 775 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 720 |
| AciI | CCGC | 1 cut(s) | 286 |
| AclWI | GGATC | 4 cut(s) | 2, 185, 382, 632 |
| AcsI | RAATTY | 2 cut(s) | 352, 567 |
| AcuI | CTGAAG | 1 cut(s) | 774 |
| AcvI | CACGTG | 2 cut(s) | 650, 668 |
| AdeI | CACNNNGTG | 1 cut(s) | 668 |
| AfaI | GTAC | 2 cut(s) | 56, 854 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 208, 273, 720 |
| AflII | CTTAAG | 1 cut(s) | 218 |
| AgsI | TTSAA | 3 cut(s) | 319, 481, 535 |
| AjiI | CACGTC | 1 cut(s) | 632 |
| AjnI | CCWGG | 1 cut(s) | 545 |
| AluBI | AGCT | 1 cut(s) | 487 |
| AluI | AGCT | 1 cut(s) | 487 |
| Alw26I | GTCTC | 1 cut(s) | 175 |
| AlwI | GGATC | 4 cut(s) | 2, 185, 382, 632 |
| AoxI | GGCC | 3 cut(s) | 548, 706, 946 |
| ApeKI | GCWGC | 1 cut(s) | 884 |
| ApoI | RAATTY | 2 cut(s) | 352, 567 |
| AspLEI | GCGC | 1 cut(s) | 336 |
| AspS9I | GGNCC | 2 cut(s) | 137, 707 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AsuNHI | GCTAGC | 1 cut(s) | 740 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| AxyI | CCTNAGG | 1 cut(s) | 573 |
| BaeGI | GKGCMC | 1 cut(s) | 778 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 775 |
| BbrPI | CACGTG | 2 cut(s) | 650, 668 |
| BbsI | GAAGAC | 1 cut(s) | 401 |
| BbvI | GCAGC | 1 cut(s) | 896 |
| BccI | CCATC | 1 cut(s) | 725 |
| BciT130I | CCWGG | 1 cut(s) | 547 |
| BclI | TGATCA | 1 cut(s) | 489 |
| BcoDI | GTCTC | 1 cut(s) | 175 |
| BfaI | CTAG | 4 cut(s) | 195, 431, 741, 747 |
| BfmI | CTRYAG | 1 cut(s) | 826 |
| BfrI | CTTAAG | 1 cut(s) | 218 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 1 cut(s) | 885 |
| BlsI | GCNGC | 1 cut(s) | 886 |
| Bme1390I | CCNGG | 1 cut(s) | 547 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmgBI | CACGTC | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 2 cut(s) | 137, 707 |
| BmiI | GGNNCC | 1 cut(s) | 777 |
| BmrFI | CCNGG | 1 cut(s) | 547 |
| BmsI | GCATC | 1 cut(s) | 1006 |
| BmtI | GCTAGC | 1 cut(s) | 744 |
| BpiI | GAAGAC | 1 cut(s) | 401 |
| BpmI | CTGGAG | 1 cut(s) | 470 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 650, 668 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 208, 273, 720 |
| Bse21I | CCTNAGG | 1 cut(s) | 573 |
| Bse3DI | GCAATG | 2 cut(s) | 248, 820 |
| BseBI | CCWGG | 1 cut(s) | 547 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 208, 273, 720 |
| BseMI | GCAATG | 2 cut(s) | 248, 820 |
| BseMII | CTCAG | 6 cut(s) | 12, 54, 167, 501, 564, 1019 |
| BseRI | GAGGAG | 1 cut(s) | 193 |
| BseSI | GKGCMC | 1 cut(s) | 778 |
| BseXI | GCAGC | 1 cut(s) | 896 |
| BshFI | GGCC | 3 cut(s) | 550, 708, 948 |
| BshNI | GGYRCC | 1 cut(s) | 775 |
| BslFI | GGGAC | 3 cut(s) | 237, 571, 690 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 208, 273, 720 |
| BsmAI | GTCTC | 1 cut(s) | 175 |
| BsmFI | GGGAC | 3 cut(s) | 237, 571, 690 |
| BsnI | GGCC | 3 cut(s) | 550, 708, 948 |
| Bsp1286I | GDGCHC | 1 cut(s) | 778 |
| Bsp143I | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| BspACI | CCGC | 1 cut(s) | 286 |
| BspANI | GGCC | 3 cut(s) | 550, 708, 948 |
| BspCNI | CTCAG | 6 cut(s) | 13, 53, 168, 502, 565, 1018 |
| BspHI | TCATGA | 2 cut(s) | 241, 688 |
| BspLI | GGNNCC | 1 cut(s) | 777 |
| BspOI | GCTAGC | 1 cut(s) | 744 |
| BspPI | GGATC | 4 cut(s) | 2, 185, 382, 632 |
| BspT107I | GGYRCC | 1 cut(s) | 775 |
| BspTI | CTTAAG | 1 cut(s) | 218 |
| BsrDI | GCAATG | 2 cut(s) | 248, 820 |
| BssMI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| Bst2UI | CCWGG | 1 cut(s) | 547 |
| Bst4CI | ACNGT | 3 cut(s) | 141, 207, 268 |
| BstAFI | CTTAAG | 1 cut(s) | 218 |
| BstBAI | YACGTR | 2 cut(s) | 650, 668 |
| BstC8I | GCNNGC | 3 cut(s) | 290, 742, 871 |
| BstDEI | CTNAG | 7 cut(s) | 21, 40, 176, 510, 573, 780, 1005 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 336 |
| BstKTI | GATC | 5 cut(s) | 10, 193, 390, 492, 640 |
| BstMAI | GTCTC | 1 cut(s) | 175 |
| BstMBI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 705, 870 |
| BstNI | CCWGG | 1 cut(s) | 547 |
| BstNSI | RCATGY | 1 cut(s) | 348 |
| BstSCI | CCNGG | 1 cut(s) | 545 |
| BstSFI | CTRYAG | 1 cut(s) | 826 |
| BstSLI | GKGCMC | 1 cut(s) | 778 |
| BstV1I | GCAGC | 1 cut(s) | 896 |
| BstV2I | GAAGAC | 1 cut(s) | 401 |
| Bsu36I | CCTNAGG | 1 cut(s) | 573 |
| BsuRI | GGCC | 3 cut(s) | 550, 708, 948 |
| BtrI | CACGTC | 1 cut(s) | 632 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 278 |
| Cac8I | GCNNGC | 3 cut(s) | 290, 742, 871 |
| CciI | TCATGA | 2 cut(s) | 241, 688 |
| CfoI | GCGC | 1 cut(s) | 336 |
| Cfr13I | GGNCC | 2 cut(s) | 137, 707 |
| Csp6I | GTAC | 2 cut(s) | 55, 853 |
| CviAII | CATG | 6 cut(s) | 242, 345, 680, 689, 822, 950 |
| CviQI | GTAC | 2 cut(s) | 55, 853 |
| DdeI | CTNAG | 7 cut(s) | 21, 40, 176, 510, 573, 780, 1005 |
| DpnI | GATC | 5 cut(s) | 9, 192, 389, 491, 639 |
| DpnII | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| DraIII | CACNNNGTG | 1 cut(s) | 668 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 684 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 684 |
| Eco147I | AGGCCT | 1 cut(s) | 550 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 1 cut(s) | 774 |
| Eco72I | CACGTG | 2 cut(s) | 650, 668 |
| Eco81I | CCTNAGG | 1 cut(s) | 573 |
| EcoO109I | RGGNCCY | 1 cut(s) | 707 |
| EcoRII | CCWGG | 1 cut(s) | 545 |
| FaeI | CATG | 6 cut(s) | 245, 348, 683, 692, 825, 953 |
| FaqI | GGGAC | 3 cut(s) | 237, 571, 690 |
| FatI | CATG | 6 cut(s) | 241, 344, 679, 688, 821, 949 |
| FbaI | TGATCA | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 1 cut(s) | 885 |
| FokI | GGATG | 1 cut(s) | 224 |
| Fsp4HI | GCNGC | 1 cut(s) | 885 |
| FspBI | CTAG | 4 cut(s) | 195, 431, 741, 747 |
| GlaI | GCGC | 1 cut(s) | 335 |
| GluI | GCNGC | 1 cut(s) | 885 |
| GsuI | CTGGAG | 1 cut(s) | 470 |
| HaeIII | GGCC | 3 cut(s) | 550, 708, 948 |
| HhaI | GCGC | 1 cut(s) | 336 |
| Hin1II | CATG | 6 cut(s) | 245, 348, 683, 692, 825, 953 |
| Hin6I | GCGC | 1 cut(s) | 334 |
| HinP1I | GCGC | 1 cut(s) | 334 |
| HincII | GTYRAC | 1 cut(s) | 1011 |
| HindII | GTYRAC | 1 cut(s) | 1011 |
| HinfI | GANTC | 5 cut(s) | 38, 397, 468, 837, 908 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 2 cut(s) | 602, 1011 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 145, 177 |
| Hpy188III | TCNNGA | 4 cut(s) | 242, 391, 572, 689 |
| Hpy8I | GTNNAC | 2 cut(s) | 602, 1011 |
| HpyAV | CCTTC | 3 cut(s) | 487, 798, 935 |
| HpyCH4III | ACNGT | 3 cut(s) | 141, 207, 268 |
| HpyCH4IV | ACGT | 4 cut(s) | 226, 631, 649, 667 |
| HpyCH4V | TGCA | 5 cut(s) | 502, 617, 662, 769, 977 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 705, 870 |
| HpyF3I | CTNAG | 7 cut(s) | 21, 40, 176, 510, 573, 780, 1005 |
| HpySE526I | ACGT | 4 cut(s) | 226, 631, 649, 667 |
| Hsp92II | CATG | 6 cut(s) | 245, 348, 683, 692, 825, 953 |
| HspAI | GCGC | 1 cut(s) | 334 |
| Ksp22I | TGATCA | 1 cut(s) | 489 |
| Kzo9I | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| LmnI | GCTCC | 1 cut(s) | 258 |
| LpnPI | CCDG | 8 cut(s) | 33, 270, 404, 434, 532, 559, 585, 969 |
| Lsp1109I | GCAGC | 1 cut(s) | 896 |
| LweI | GCATC | 1 cut(s) | 1006 |
| MaeI | CTAG | 4 cut(s) | 195, 431, 741, 747 |
| MaeII | ACGT | 4 cut(s) | 226, 631, 649, 667 |
| MaeIII | GTNAC | 1 cut(s) | 650 |
| MalI | GATC | 5 cut(s) | 9, 192, 389, 491, 639 |
| MboI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| MboII | GAAGA | 3 cut(s) | 389, 406, 950 |
| MfeI | CAATTG | 1 cut(s) | 972 |
| MhlI | GDGCHC | 1 cut(s) | 778 |
| MluCI | AATT | 6 cut(s) | 352, 423, 567, 580, 889, 972 |
| MlyI | GAGTC | 4 cut(s) | 32, 391, 846, 917 |
| MmeI | TCCRAC | 3 cut(s) | 35, 226, 607 |
| MseI | TTAA | 3 cut(s) | 167, 219, 984 |
| MslI | CAYNNNNRTG | 1 cut(s) | 729 |
| MspCI | CTTAAG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 1 cut(s) | 547 |
| MunI | CAATTG | 1 cut(s) | 972 |
| MvaI | CCWGG | 1 cut(s) | 547 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 705, 870 |
| NdeII | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| NheI | GCTAGC | 1 cut(s) | 740 |
| NlaIII | CATG | 6 cut(s) | 245, 348, 683, 692, 825, 953 |
| NlaIV | GGNNCC | 1 cut(s) | 777 |
| NmuCI | GTSAC | 1 cut(s) | 650 |
| NspI | RCATGY | 1 cut(s) | 348 |
| PagI | TCATGA | 2 cut(s) | 241, 688 |
| PceI | AGGCCT | 1 cut(s) | 550 |
| PfeI | GAWTC | 1 cut(s) | 468 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 720 |
| PkrI | GCNGC | 1 cut(s) | 886 |
| PleI | GAGTC | 4 cut(s) | 32, 391, 845, 916 |
| PmaCI | CACGTG | 2 cut(s) | 650, 668 |
| PmlI | CACGTG | 2 cut(s) | 650, 668 |
| PpsI | GAGTC | 4 cut(s) | 32, 391, 845, 916 |
| Ppu21I | YACGTR | 2 cut(s) | 650, 668 |
| Psp6I | CCWGG | 1 cut(s) | 545 |
| PspCI | CACGTG | 2 cut(s) | 650, 668 |
| PspGI | CCWGG | 1 cut(s) | 545 |
| PspN4I | GGNNCC | 1 cut(s) | 777 |
| PspPI | GGNCC | 2 cut(s) | 137, 707 |
| RsaI | GTAC | 2 cut(s) | 56, 854 |
| RsaNI | GTAC | 2 cut(s) | 55, 853 |
| RseI | CAYNNNNRTG | 1 cut(s) | 729 |
| SaqAI | TTAA | 3 cut(s) | 167, 219, 984 |
| SatI | GCNGC | 1 cut(s) | 885 |
| Sau3AI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| Sau96I | GGNCC | 2 cut(s) | 137, 707 |
| SchI | GAGTC | 4 cut(s) | 32, 391, 846, 917 |
| ScrFI | CCNGG | 1 cut(s) | 547 |
| SduI | GDGCHC | 1 cut(s) | 778 |
| SfaNI | GCATC | 1 cut(s) | 1006 |
| SfcI | CTRYAG | 1 cut(s) | 826 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 729 |
| SmlI | CTYRAG | 2 cut(s) | 50, 218 |
| SmoI | CTYRAG | 2 cut(s) | 50, 218 |
| Sse9I | AATT | 6 cut(s) | 352, 423, 567, 580, 889, 972 |
| SseBI | AGGCCT | 1 cut(s) | 550 |
| SsiI | CCGC | 1 cut(s) | 286 |
| SspMI | CTAG | 4 cut(s) | 195, 431, 741, 747 |
| StuI | AGGCCT | 1 cut(s) | 550 |
| StyD4I | CCNGG | 1 cut(s) | 545 |
| TaaI | ACNGT | 3 cut(s) | 141, 207, 268 |
| TaiI | ACGT | 4 cut(s) | 229, 634, 652, 670 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 6 cut(s) | 352, 423, 567, 580, 889, 972 |
| TfiI | GAWTC | 1 cut(s) | 468 |
| Tru1I | TTAA | 3 cut(s) | 167, 219, 984 |
| Tru9I | TTAA | 3 cut(s) | 167, 219, 984 |
| TscAI | CASTG | 2 cut(s) | 112, 278 |
| TseFI | GTSAC | 1 cut(s) | 650 |
| TseI | GCWGC | 1 cut(s) | 884 |
| Tsp45I | GTSAC | 1 cut(s) | 650 |
| TspDTI | ATGAA | 3 cut(s) | 230, 294, 831 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 2 cut(s) | 112, 278 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 720 |
| Vha464I | CTTAAG | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 2 cut(s) | 352, 567 |
| XceI | RCATGY | 1 cut(s) | 348 |
| XspI | CTAG | 4 cut(s) | 195, 431, 741, 747 |