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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 64 |
| AccIII | TCCGGA | 1 cut(s) | 535 |
| AciI | CCGC | 2 cut(s) | 398, 564 |
| AclWI | GGATC | 3 cut(s) | 2, 596, 661 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AcsI | RAATTY | 2 cut(s) | 23, 531 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AdeI | CACNNNGTG | 1 cut(s) | 632 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfeI | AGCGCT | 1 cut(s) | 387 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 226, 237, 582 |
| AflIII | ACRYGT | 2 cut(s) | 291, 595 |
| AgsI | TTSAA | 5 cut(s) | 154, 283, 445, 476, 499 |
| AjiI | CACGTC | 2 cut(s) | 311, 596 |
| AjnI | CCWGG | 1 cut(s) | 509 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 3 cut(s) | 2, 596, 661 |
| Aor13HI | TCCGGA | 1 cut(s) | 535 |
| Aor51HI | AGCGCT | 1 cut(s) | 387 |
| AoxI | GGCC | 3 cut(s) | 228, 512, 647 |
| ApoI | RAATTY | 2 cut(s) | 23, 531 |
| AspLEI | GCGC | 2 cut(s) | 300, 388 |
| AspS9I | GGNCC | 2 cut(s) | 400, 647 |
| AsuC2I | CCSGG | 1 cut(s) | 651 |
| AvaII | GGWCC | 1 cut(s) | 400 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BciT130I | CCWGG | 1 cut(s) | 511 |
| BclI | TGATCA | 1 cut(s) | 453 |
| BcnI | CCSGG | 1 cut(s) | 651 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 395 |
| BfoI | RGCGCY | 1 cut(s) | 389 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 2 cut(s) | 511, 651 |
| Bme18I | GGWCC | 1 cut(s) | 400 |
| BmgBI | CACGTC | 2 cut(s) | 311, 596 |
| BmgT120I | GGNCC | 2 cut(s) | 400, 647 |
| BmrFI | CCNGG | 2 cut(s) | 511, 651 |
| BmsI | GCATC | 2 cut(s) | 166, 658 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BpuMI | CCSGG | 1 cut(s) | 651 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| BsaI | GGTCTC | 1 cut(s) | 73 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 226, 237, 582 |
| Bse1I | ACTGG | 3 cut(s) | 231, 403, 523 |
| BseAI | TCCGGA | 1 cut(s) | 535 |
| BseBI | CCWGG | 1 cut(s) | 511 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 226, 237, 582 |
| BseMII | CTCAG | 1 cut(s) | 54 |
| BseNI | ACTGG | 3 cut(s) | 231, 403, 523 |
| BshFI | GGCC | 3 cut(s) | 230, 514, 649 |
| BsiSI | CCGG | 2 cut(s) | 536, 650 |
| BslFI | GGGAC | 2 cut(s) | 201, 654 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 226, 237, 582 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 2 cut(s) | 201, 654 |
| BsnI | GGCC | 3 cut(s) | 230, 514, 649 |
| Bso31I | GGTCTC | 1 cut(s) | 73 |
| Bsp13I | TCCGGA | 1 cut(s) | 535 |
| Bsp143I | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| BspACI | CCGC | 2 cut(s) | 398, 564 |
| BspANI | GGCC | 3 cut(s) | 230, 514, 649 |
| BspCNI | CTCAG | 1 cut(s) | 53 |
| BspEI | TCCGGA | 1 cut(s) | 535 |
| BspPI | GGATC | 3 cut(s) | 2, 596, 661 |
| BspTNI | GGTCTC | 1 cut(s) | 73 |
| BsrI | ACTGG | 3 cut(s) | 231, 403, 523 |
| BssMI | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| Bst2UI | CCWGG | 1 cut(s) | 511 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 171 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstDEI | CTNAG | 1 cut(s) | 40 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstH2I | RGCGCY | 1 cut(s) | 389 |
| BstHHI | GCGC | 2 cut(s) | 300, 388 |
| BstKTI | GATC | 5 cut(s) | 10, 354, 456, 604, 656 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 1 cut(s) | 511 |
| BstNSI | RCATGY | 1 cut(s) | 295 |
| BstSCI | CCNGG | 2 cut(s) | 509, 649 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BsuRI | GGCC | 3 cut(s) | 230, 514, 649 |
| BtrI | CACGTC | 2 cut(s) | 311, 596 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 242 |
| CfoI | GCGC | 2 cut(s) | 300, 388 |
| Cfr13I | GGNCC | 2 cut(s) | 400, 647 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 2 cut(s) | 292, 644 |
| CviJI | RGCY | 6 cut(s) | 5, 230, 459, 514, 542, 649 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 230, 459, 514, 542, 649 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 1 cut(s) | 40 |
| DpnI | GATC | 5 cut(s) | 9, 353, 455, 603, 655 |
| DpnII | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| DraIII | CACNNNGTG | 1 cut(s) | 632 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| EciI | GGCGGA | 1 cut(s) | 579 |
| Eco147I | AGGCCT | 1 cut(s) | 514 |
| Eco31I | GGTCTC | 1 cut(s) | 73 |
| Eco47I | GGWCC | 1 cut(s) | 400 |
| Eco47III | AGCGCT | 1 cut(s) | 387 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| EcoRII | CCWGG | 1 cut(s) | 509 |
| FaeI | CATG | 2 cut(s) | 295, 647 |
| FaiI | YATR | 9 cut(s) | 207, 293, 350, 392, 408, 420, 483, 549, 645 |
| FaqI | GGGAC | 2 cut(s) | 201, 654 |
| FatI | CATG | 2 cut(s) | 291, 643 |
| FbaI | TGATCA | 1 cut(s) | 453 |
| FokI | GGATG | 1 cut(s) | 188 |
| FspBI | CTAG | 1 cut(s) | 395 |
| GlaI | GCGC | 2 cut(s) | 299, 387 |
| HaeII | RGCGCY | 1 cut(s) | 389 |
| HaeIII | GGCC | 3 cut(s) | 230, 514, 649 |
| HapII | CCGG | 2 cut(s) | 536, 650 |
| HhaI | GCGC | 2 cut(s) | 300, 388 |
| Hin1II | CATG | 2 cut(s) | 295, 647 |
| Hin6I | GCGC | 2 cut(s) | 298, 386 |
| HinP1I | GCGC | 2 cut(s) | 298, 386 |
| HinfI | GANTC | 4 cut(s) | 38, 246, 361, 432 |
| HpaII | CCGG | 2 cut(s) | 536, 650 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 2 cut(s) | 496, 536 |
| HpyAV | CCTTC | 2 cut(s) | 38, 451 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 171 |
| HpyCH4IV | ACGT | 5 cut(s) | 190, 310, 595, 613, 631 |
| HpyCH4V | TGCA | 3 cut(s) | 581, 626, 671 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 1 cut(s) | 40 |
| HpySE526I | ACGT | 5 cut(s) | 190, 310, 595, 613, 631 |
| Hsp92II | CATG | 2 cut(s) | 295, 647 |
| HspAI | GCGC | 2 cut(s) | 298, 386 |
| Kpn2I | TCCGGA | 1 cut(s) | 535 |
| Ksp22I | TGATCA | 1 cut(s) | 453 |
| Kzo9I | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| LmnI | GCTCC | 1 cut(s) | 222 |
| LpnPI | CCDG | 9 cut(s) | 33, 212, 234, 416, 496, 504, 523, 549, 663 |
| LweI | GCATC | 2 cut(s) | 166, 658 |
| MaeI | CTAG | 1 cut(s) | 395 |
| MaeII | ACGT | 5 cut(s) | 190, 310, 595, 613, 631 |
| MaeIII | GTNAC | 1 cut(s) | 614 |
| MalI | GATC | 5 cut(s) | 9, 353, 455, 603, 655 |
| MboI | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| MboII | GAAGA | 2 cut(s) | 166, 353 |
| MluCI | AATT | 5 cut(s) | 23, 316, 449, 531, 544 |
| MlyI | GAGTC | 2 cut(s) | 32, 355 |
| MmeI | TCCRAC | 2 cut(s) | 35, 393 |
| MnlI | CCTC | 2 cut(s) | 481, 532 |
| MroI | TCCGGA | 1 cut(s) | 535 |
| MseI | TTAA | 2 cut(s) | 183, 315 |
| MspI | CCGG | 2 cut(s) | 536, 650 |
| MspR9I | CCNGG | 2 cut(s) | 511, 651 |
| MvaI | CCWGG | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NciI | CCSGG | 1 cut(s) | 651 |
| NdeII | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| NlaIII | CATG | 2 cut(s) | 295, 647 |
| NmuCI | GTSAC | 1 cut(s) | 614 |
| NspI | RCATGY | 1 cut(s) | 295 |
| PceI | AGGCCT | 1 cut(s) | 514 |
| PciI | ACATGT | 1 cut(s) | 291 |
| PfeI | GAWTC | 2 cut(s) | 246, 432 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 64 |
| PleI | GAGTC | 2 cut(s) | 32, 355 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 2 cut(s) | 32, 355 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PscI | ACATGT | 1 cut(s) | 291 |
| Psp6I | CCWGG | 1 cut(s) | 509 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspGI | CCWGG | 1 cut(s) | 509 |
| PspPI | GGNCC | 2 cut(s) | 400, 647 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 2 cut(s) | 183, 315 |
| Sau3AI | GATC | 5 cut(s) | 7, 351, 453, 601, 653 |
| Sau96I | GGNCC | 2 cut(s) | 400, 647 |
| SchI | GAGTC | 2 cut(s) | 32, 355 |
| ScrFI | CCNGG | 2 cut(s) | 511, 651 |
| SfaNI | GCATC | 2 cut(s) | 166, 658 |
| SinI | GGWCC | 1 cut(s) | 400 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 5 cut(s) | 23, 316, 449, 531, 544 |
| SseBI | AGGCCT | 1 cut(s) | 514 |
| SsiI | CCGC | 2 cut(s) | 398, 564 |
| SspMI | CTAG | 1 cut(s) | 395 |
| StuI | AGGCCT | 1 cut(s) | 514 |
| StyD4I | CCNGG | 2 cut(s) | 509, 649 |
| TaaI | ACNGT | 2 cut(s) | 62, 171 |
| TaiI | ACGT | 5 cut(s) | 193, 313, 598, 616, 634 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 316, 449, 531, 544 |
| TfiI | GAWTC | 2 cut(s) | 246, 432 |
| Tru1I | TTAA | 2 cut(s) | 183, 315 |
| Tru9I | TTAA | 2 cut(s) | 183, 315 |
| TscAI | CASTG | 2 cut(s) | 112, 242 |
| TseFI | GTSAC | 1 cut(s) | 614 |
| Tsp45I | GTSAC | 1 cut(s) | 614 |
| TspDTI | ATGAA | 3 cut(s) | 150, 194, 572 |
| TspGWI | ACGGA | 1 cut(s) | 239 |
| TspRI | CASTG | 2 cut(s) | 112, 242 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 64 |
| VpaK11BI | GGWCC | 1 cut(s) | 400 |
| XapI | RAATTY | 2 cut(s) | 23, 531 |
| XceI | RCATGY | 1 cut(s) | 295 |
| XspI | CTAG | 1 cut(s) | 395 |