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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 800 |
| AccII | CGCG | 1 cut(s) | 498 |
| AciI | CCGC | 4 cut(s) | 151, 521, 640, 804 |
| AclWI | GGATC | 3 cut(s) | 17, 247, 629 |
| AcsI | RAATTY | 2 cut(s) | 217, 432 |
| AcuI | CTGAAG | 2 cut(s) | 267, 668 |
| AdeI | CACNNNGTG | 2 cut(s) | 653, 833 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 37, 138, 790, 791, 792 |
| AflII | CTTAAG | 1 cut(s) | 83 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgeI | ACCGGT | 1 cut(s) | 509 |
| AgsI | TTSAA | 3 cut(s) | 55, 346, 400 |
| AjiI | CACGTC | 1 cut(s) | 212 |
| AluBI | AGCT | 2 cut(s) | 352, 755 |
| AluI | AGCT | 2 cut(s) | 352, 755 |
| Alw26I | GTCTC | 2 cut(s) | 533, 630 |
| AlwI | GGATC | 3 cut(s) | 17, 247, 629 |
| AoxI | GGCC | 2 cut(s) | 413, 849 |
| ApeKI | GCWGC | 1 cut(s) | 755 |
| ApoI | RAATTY | 2 cut(s) | 217, 432 |
| AsiGI | ACCGGT | 1 cut(s) | 509 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 45 |
| AspLEI | GCGC | 1 cut(s) | 201 |
| AxyI | CCTNAGG | 1 cut(s) | 438 |
| BaeGI | GKGCMC | 1 cut(s) | 798 |
| BanI | GGYRCC | 1 cut(s) | 800 |
| BbsI | GAAGAC | 3 cut(s) | 62, 266, 538 |
| BbvI | GCAGC | 1 cut(s) | 742 |
| BceAI | ACGGC | 1 cut(s) | 836 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BcoDI | GTCTC | 2 cut(s) | 533, 630 |
| BfaI | CTAG | 2 cut(s) | 27, 296 |
| BfrI | CTTAAG | 1 cut(s) | 83 |
| BisI | GCNGC | 2 cut(s) | 756, 804 |
| BlsI | GCNGC | 2 cut(s) | 757, 805 |
| BmgBI | CACGTC | 1 cut(s) | 212 |
| BmiI | GGNNCC | 2 cut(s) | 802, 858 |
| BmsI | GCATC | 2 cut(s) | 693, 700 |
| BpiI | GAAGAC | 3 cut(s) | 62, 266, 538 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| Bsa29I | ATCGAT | 1 cut(s) | 678 |
| BsaJI | CCNNGG | 2 cut(s) | 584, 852 |
| BsaWI | WCCGGW | 1 cut(s) | 509 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 828, 858 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 37, 138, 790, 791, 792 |
| Bse118I | RCCGGY | 1 cut(s) | 509 |
| Bse1I | ACTGG | 2 cut(s) | 304, 550 |
| Bse21I | CCTNAGG | 1 cut(s) | 438 |
| BseCI | ATCGAT | 1 cut(s) | 678 |
| BseDI | CCNNGG | 2 cut(s) | 584, 852 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 37, 138, 790, 791, 792 |
| BseMII | CTCAG | 2 cut(s) | 366, 429 |
| BseNI | ACTGG | 2 cut(s) | 304, 550 |
| BseSI | GKGCMC | 1 cut(s) | 798 |
| BseXI | GCAGC | 1 cut(s) | 742 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| Bsh1236I | CGCG | 1 cut(s) | 498 |
| BshFI | GGCC | 2 cut(s) | 415, 851 |
| BshNI | GGYRCC | 1 cut(s) | 800 |
| BshTI | ACCGGT | 1 cut(s) | 509 |
| BshVI | ATCGAT | 1 cut(s) | 678 |
| BsiSI | CCGG | 1 cut(s) | 510 |
| BslFI | GGGAC | 4 cut(s) | 102, 436, 599, 767 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 37, 138, 790, 791, 792 |
| BsmAI | GTCTC | 2 cut(s) | 533, 630 |
| BsmFI | GGGAC | 4 cut(s) | 102, 436, 599, 767 |
| BsmI | GAATGC | 1 cut(s) | 82 |
| BsnI | GGCC | 2 cut(s) | 415, 851 |
| Bsp1286I | GDGCHC | 1 cut(s) | 798 |
| Bsp143I | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| BspACI | CCGC | 4 cut(s) | 151, 521, 640, 804 |
| BspANI | GGCC | 2 cut(s) | 415, 851 |
| BspCNI | CTCAG | 2 cut(s) | 367, 430 |
| BspDI | ATCGAT | 1 cut(s) | 678 |
| BspFNI | CGCG | 1 cut(s) | 498 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 2 cut(s) | 802, 858 |
| BspPI | GGATC | 3 cut(s) | 17, 247, 629 |
| BspT107I | GGYRCC | 1 cut(s) | 800 |
| BspTI | CTTAAG | 1 cut(s) | 83 |
| BsrFI | RCCGGY | 1 cut(s) | 509 |
| BsrI | ACTGG | 2 cut(s) | 304, 550 |
| BssAI | RCCGGY | 1 cut(s) | 509 |
| BssECI | CCNNGG | 2 cut(s) | 584, 852 |
| BssMI | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| BssT1I | CCWWGG | 1 cut(s) | 584 |
| Bst4CI | ACNGT | 3 cut(s) | 72, 544, 800 |
| BstAFI | CTTAAG | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 155 |
| BstDEI | CTNAG | 3 cut(s) | 375, 438, 830 |
| BstDSI | CCRYGG | 1 cut(s) | 852 |
| BstFNI | CGCG | 1 cut(s) | 498 |
| BstHHI | GCGC | 1 cut(s) | 201 |
| BstKTI | GATC | 7 cut(s) | 25, 255, 357, 502, 637, 682, 743 |
| BstMAI | GTCTC | 2 cut(s) | 533, 630 |
| BstMBI | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstSLI | GKGCMC | 1 cut(s) | 798 |
| BstUI | CGCG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 1 cut(s) | 742 |
| BstV2I | GAAGAC | 3 cut(s) | 62, 266, 538 |
| Bsu15I | ATCGAT | 1 cut(s) | 678 |
| Bsu36I | CCTNAGG | 1 cut(s) | 438 |
| BsuRI | GGCC | 2 cut(s) | 415, 851 |
| BsuTUI | ATCGAT | 1 cut(s) | 678 |
| BtgI | CCRYGG | 1 cut(s) | 852 |
| BtrI | CACGTC | 1 cut(s) | 212 |
| BtsIMutI | CAGTG | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 1 cut(s) | 155 |
| CciI | TCATGA | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 201 |
| Cfr10I | RCCGGY | 1 cut(s) | 509 |
| ClaI | ATCGAT | 1 cut(s) | 678 |
| CseI | GACGC | 1 cut(s) | 504 |
| CspAI | ACCGGT | 1 cut(s) | 509 |
| CviAII | CATG | 2 cut(s) | 107, 193 |
| CviJI | RGCY | 9 cut(s) | 30, 313, 352, 374, 415, 443, 755, 851, 857 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 313, 352, 374, 415, 443, 755, 851, 857 |
| DdeI | CTNAG | 3 cut(s) | 375, 438, 830 |
| DpnI | GATC | 7 cut(s) | 24, 254, 356, 501, 636, 681, 742 |
| DpnII | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| DraIII | CACNNNGTG | 2 cut(s) | 653, 833 |
| Eco130I | CCWWGG | 1 cut(s) | 584 |
| Eco147I | AGGCCT | 1 cut(s) | 415 |
| Eco32I | GATATC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 2 cut(s) | 267, 668 |
| Eco81I | CCTNAGG | 1 cut(s) | 438 |
| EcoRV | GATATC | 1 cut(s) | 724 |
| EcoT14I | CCWWGG | 1 cut(s) | 584 |
| ErhI | CCWWGG | 1 cut(s) | 584 |
| FaeI | CATG | 2 cut(s) | 110, 196 |
| FaqI | GGGAC | 4 cut(s) | 102, 436, 599, 767 |
| FatI | CATG | 2 cut(s) | 106, 192 |
| FauI | CCCGC | 1 cut(s) | 647 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 2 cut(s) | 756, 804 |
| Fsp4HI | GCNGC | 2 cut(s) | 756, 804 |
| FspBI | CTAG | 2 cut(s) | 27, 296 |
| GlaI | GCGC | 1 cut(s) | 200 |
| GluI | GCNGC | 2 cut(s) | 756, 804 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeIII | GGCC | 2 cut(s) | 415, 851 |
| HapII | CCGG | 1 cut(s) | 510 |
| HgaI | GACGC | 1 cut(s) | 504 |
| HhaI | GCGC | 1 cut(s) | 201 |
| Hin1II | CATG | 2 cut(s) | 110, 196 |
| Hin6I | GCGC | 1 cut(s) | 199 |
| HinP1I | GCGC | 1 cut(s) | 199 |
| HinfI | GANTC | 2 cut(s) | 262, 333 |
| HpaII | CCGG | 1 cut(s) | 510 |
| Hpy166II | GTNNAC | 1 cut(s) | 717 |
| Hpy188I | TCNGA | 1 cut(s) | 687 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 256, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 717 |
| HpyAV | CCTTC | 1 cut(s) | 352 |
| HpyCH4III | ACNGT | 3 cut(s) | 72, 544, 800 |
| HpyCH4IV | ACGT | 3 cut(s) | 91, 211, 690 |
| HpyCH4V | TGCA | 4 cut(s) | 367, 482, 758, 770 |
| HpyF3I | CTNAG | 3 cut(s) | 375, 438, 830 |
| HpySE526I | ACGT | 3 cut(s) | 91, 211, 690 |
| Hsp92II | CATG | 2 cut(s) | 110, 196 |
| HspAI | GCGC | 1 cut(s) | 199 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| LmnI | GCTCC | 2 cut(s) | 123, 862 |
| Lsp1109I | GCAGC | 1 cut(s) | 742 |
| LweI | GCATC | 2 cut(s) | 693, 700 |
| MaeI | CTAG | 2 cut(s) | 27, 296 |
| MaeII | ACGT | 3 cut(s) | 91, 211, 690 |
| MaeIII | GTNAC | 2 cut(s) | 527, 733 |
| MalI | GATC | 7 cut(s) | 24, 254, 356, 501, 636, 681, 742 |
| MboI | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| MboII | GAAGA | 4 cut(s) | 67, 271, 538, 674 |
| MhlI | GDGCHC | 1 cut(s) | 798 |
| MluCI | AATT | 5 cut(s) | 217, 288, 432, 445, 599 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MmeI | TCCRAC | 1 cut(s) | 472 |
| MnlI | CCTC | 7 cut(s) | 3, 372, 382, 433, 806, 830, 841 |
| MroXI | GAANNNNTTC | 1 cut(s) | 45 |
| MseI | TTAA | 1 cut(s) | 84 |
| MslI | CAYNNNNRTG | 1 cut(s) | 534 |
| MspA1I | CMGCKG | 1 cut(s) | 755 |
| MspCI | CTTAAG | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 510 |
| Mva1269I | GAATGC | 1 cut(s) | 82 |
| MvnI | CGCG | 1 cut(s) | 498 |
| NdeII | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| NlaIII | CATG | 2 cut(s) | 110, 196 |
| NlaIV | GGNNCC | 2 cut(s) | 802, 858 |
| NmuCI | GTSAC | 2 cut(s) | 527, 733 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PceI | AGGCCT | 1 cut(s) | 415 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PctI | GAATGC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 45 |
| PfeI | GAWTC | 1 cut(s) | 333 |
| PinAI | ACCGGT | 1 cut(s) | 509 |
| PkrI | GCNGC | 2 cut(s) | 757, 805 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| PscI | ACATGT | 1 cut(s) | 192 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 2 cut(s) | 802, 858 |
| PvuII | CAGCTG | 1 cut(s) | 755 |
| RseI | CAYNNNNRTG | 1 cut(s) | 534 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 2 cut(s) | 756, 804 |
| Sau3AI | GATC | 7 cut(s) | 22, 252, 354, 499, 634, 679, 740 |
| SchI | GAGTC | 1 cut(s) | 256 |
| SduI | GDGCHC | 1 cut(s) | 798 |
| SfaNI | GCATC | 2 cut(s) | 693, 700 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 534 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| Sse9I | AATT | 5 cut(s) | 217, 288, 432, 445, 599 |
| SseBI | AGGCCT | 1 cut(s) | 415 |
| SsiI | CCGC | 4 cut(s) | 151, 521, 640, 804 |
| SspMI | CTAG | 2 cut(s) | 27, 296 |
| StuI | AGGCCT | 1 cut(s) | 415 |
| StyI | CCWWGG | 1 cut(s) | 584 |
| TaaI | ACNGT | 3 cut(s) | 72, 544, 800 |
| TaiI | ACGT | 3 cut(s) | 94, 214, 693 |
| TaqI | TCGA | 2 cut(s) | 183, 678 |
| TasI | AATT | 5 cut(s) | 217, 288, 432, 445, 599 |
| TauI | GCSGC | 1 cut(s) | 806 |
| TfiI | GAWTC | 1 cut(s) | 333 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 143 |
| TseFI | GTSAC | 2 cut(s) | 527, 733 |
| TseI | GCWGC | 1 cut(s) | 755 |
| Tsp45I | GTSAC | 2 cut(s) | 527, 733 |
| TspDTI | ATGAA | 2 cut(s) | 95, 159 |
| TspRI | CASTG | 1 cut(s) | 143 |
| Vha464I | CTTAAG | 1 cut(s) | 83 |
| XapI | RAATTY | 2 cut(s) | 217, 432 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 45 |
| XspI | CTAG | 2 cut(s) | 27, 296 |