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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 821 |
| AciI | CCGC | 1 cut(s) | 244 |
| AclWI | GGATC | 3 cut(s) | 110, 587, 648 |
| AcsI | RAATTY | 2 cut(s) | 522, 698 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AcvI | CACGTG | 2 cut(s) | 605, 623 |
| AdeI | CACNNNGTG | 1 cut(s) | 623 |
| AfaI | GTAC | 3 cut(s) | 137, 384, 716 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 130 |
| AgsI | TTSAA | 6 cut(s) | 148, 277, 436, 490, 568, 847 |
| AjiI | CACGTC | 2 cut(s) | 302, 587 |
| AjnI | CCWGG | 1 cut(s) | 500 |
| AluBI | AGCT | 2 cut(s) | 224, 377 |
| AluI | AGCT | 2 cut(s) | 224, 377 |
| Alw26I | GTCTC | 2 cut(s) | 308, 463 |
| AlwI | GGATC | 3 cut(s) | 110, 587, 648 |
| Ama87I | CYCGRG | 1 cut(s) | 527 |
| AoxI | GGCC | 1 cut(s) | 503 |
| ApeKI | GCWGC | 1 cut(s) | 746 |
| ApoI | RAATTY | 2 cut(s) | 522, 698 |
| AspLEI | GCGC | 1 cut(s) | 291 |
| AspS9I | GGNCC | 1 cut(s) | 504 |
| AsuHPI | GGTGA | 3 cut(s) | 88, 347, 566 |
| AvaI | CYCGRG | 1 cut(s) | 527 |
| BbrPI | CACGTG | 2 cut(s) | 605, 623 |
| BbsI | GAAGAC | 1 cut(s) | 155 |
| BbvI | GCAGC | 1 cut(s) | 758 |
| BciT130I | CCWGG | 1 cut(s) | 502 |
| BclI | TGATCA | 1 cut(s) | 444 |
| BcoDI | GTCTC | 2 cut(s) | 308, 463 |
| BfaI | CTAG | 3 cut(s) | 215, 221, 386 |
| BfmI | CTRYAG | 1 cut(s) | 688 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 17 |
| BisI | GCNGC | 1 cut(s) | 747 |
| BlsI | GCNGC | 1 cut(s) | 748 |
| Bme1390I | CCNGG | 1 cut(s) | 502 |
| BmeT110I | CYCGRG | 1 cut(s) | 527 |
| BmgBI | CACGTC | 2 cut(s) | 302, 587 |
| BmgT120I | GGNCC | 1 cut(s) | 504 |
| BmrFI | CCNGG | 1 cut(s) | 502 |
| BmrI | ACTGGG | 1 cut(s) | 519 |
| BmsI | GCATC | 4 cut(s) | 76, 160, 645, 868 |
| BmuI | ACTGGG | 1 cut(s) | 519 |
| BpiI | GAAGAC | 1 cut(s) | 155 |
| BsaAI | YACGTR | 2 cut(s) | 605, 623 |
| BsaJI | CCNNGG | 1 cut(s) | 528 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 130 |
| Bse1I | ACTGG | 2 cut(s) | 394, 514 |
| BseBI | CCWGG | 1 cut(s) | 502 |
| BseDI | CCNNGG | 1 cut(s) | 528 |
| BseGI | GGATG | 2 cut(s) | 175, 883 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 130 |
| BseMII | CTCAG | 2 cut(s) | 92, 456 |
| BseNI | ACTGG | 2 cut(s) | 394, 514 |
| BseXI | GCAGC | 1 cut(s) | 758 |
| BseYI | CCCAGC | 1 cut(s) | 129 |
| BshFI | GGCC | 1 cut(s) | 505 |
| BsiHKCI | CYCGRG | 1 cut(s) | 527 |
| BslFI | GGGAC | 2 cut(s) | 526, 645 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 130 |
| BsmAI | GTCTC | 2 cut(s) | 308, 463 |
| BsmBI | CGTCTC | 1 cut(s) | 308 |
| BsmFI | GGGAC | 2 cut(s) | 526, 645 |
| BsnI | GGCC | 1 cut(s) | 505 |
| BsoBI | CYCGRG | 1 cut(s) | 527 |
| Bsp143I | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| BspACI | CCGC | 1 cut(s) | 244 |
| BspANI | GGCC | 1 cut(s) | 505 |
| BspCNI | CTCAG | 2 cut(s) | 93, 457 |
| BspHI | TCATGA | 2 cut(s) | 199, 811 |
| BspPI | GGATC | 3 cut(s) | 110, 587, 648 |
| BsrI | ACTGG | 2 cut(s) | 394, 514 |
| BssECI | CCNNGG | 1 cut(s) | 528 |
| BssMI | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| Bst2UI | CCWGG | 1 cut(s) | 502 |
| BstBAI | YACGTR | 2 cut(s) | 605, 623 |
| BstC8I | GCNNGC | 1 cut(s) | 248 |
| BstDEI | CTNAG | 3 cut(s) | 101, 465, 867 |
| BstF5I | GGATG | 2 cut(s) | 175, 883 |
| BstHHI | GCGC | 1 cut(s) | 291 |
| BstKTI | GATC | 5 cut(s) | 118, 345, 447, 595, 643 |
| BstMAI | GTCTC | 2 cut(s) | 308, 463 |
| BstMBI | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstNI | CCWGG | 1 cut(s) | 502 |
| BstNSI | RCATGY | 1 cut(s) | 289 |
| BstSCI | CCNGG | 1 cut(s) | 500 |
| BstSFI | CTRYAG | 1 cut(s) | 688 |
| BstV1I | GCAGC | 1 cut(s) | 758 |
| BstV2I | GAAGAC | 1 cut(s) | 155 |
| BsuRI | GGCC | 1 cut(s) | 505 |
| BtrI | CACGTC | 2 cut(s) | 302, 587 |
| BtsCI | GGATG | 2 cut(s) | 175, 883 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 4 cut(s) | 30, 236, 274, 507 |
| Cac8I | GCNNGC | 1 cut(s) | 248 |
| CciI | TCATGA | 2 cut(s) | 199, 811 |
| CfoI | GCGC | 1 cut(s) | 291 |
| Cfr13I | GGNCC | 1 cut(s) | 504 |
| Csp6I | GTAC | 3 cut(s) | 136, 383, 715 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 295, 330 |
| CviAII | CATG | 7 cut(s) | 200, 286, 614, 635, 644, 684, 812 |
| CviJI | RGCY | 7 cut(s) | 224, 377, 450, 464, 505, 533, 788 |
| CviKI_1 | RGCY | 7 cut(s) | 224, 377, 450, 464, 505, 533, 788 |
| CviQI | GTAC | 3 cut(s) | 136, 383, 715 |
| DdeI | CTNAG | 3 cut(s) | 101, 465, 867 |
| DpnI | GATC | 5 cut(s) | 117, 344, 446, 594, 642 |
| DpnII | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| DraIII | CACNNNGTG | 1 cut(s) | 623 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 821 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 821 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| Eco72I | CACGTG | 2 cut(s) | 605, 623 |
| Eco88I | CYCGRG | 1 cut(s) | 527 |
| EcoRI | GAATTC | 1 cut(s) | 698 |
| EcoRII | CCWGG | 1 cut(s) | 500 |
| Esp3I | CGTCTC | 1 cut(s) | 308 |
| FaeI | CATG | 7 cut(s) | 203, 289, 617, 638, 647, 687, 815 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 846, 878 |
| FaqI | GGGAC | 2 cut(s) | 526, 645 |
| FatI | CATG | 7 cut(s) | 199, 285, 613, 634, 643, 683, 811 |
| FbaI | TGATCA | 1 cut(s) | 444 |
| Fnu4HI | GCNGC | 1 cut(s) | 747 |
| FokI | GGATG | 2 cut(s) | 182, 890 |
| Fsp4HI | GCNGC | 1 cut(s) | 747 |
| FspBI | CTAG | 3 cut(s) | 215, 221, 386 |
| GlaI | GCGC | 1 cut(s) | 290 |
| GluI | GCNGC | 1 cut(s) | 747 |
| GsaI | CCCAGC | 1 cut(s) | 133 |
| HaeIII | GGCC | 1 cut(s) | 505 |
| HhaI | GCGC | 1 cut(s) | 291 |
| Hin1II | CATG | 7 cut(s) | 203, 289, 617, 638, 647, 687, 815 |
| Hin6I | GCGC | 1 cut(s) | 289 |
| HinP1I | GCGC | 1 cut(s) | 289 |
| HincII | GTYRAC | 2 cut(s) | 673, 826 |
| HindII | GTYRAC | 2 cut(s) | 673, 826 |
| HinfI | GANTC | 5 cut(s) | 240, 352, 423, 481, 770 |
| HphI | GGTGA | 3 cut(s) | 88, 347, 566 |
| Hpy166II | GTNNAC | 2 cut(s) | 673, 826 |
| Hpy188I | TCNGA | 1 cut(s) | 102 |
| Hpy188III | TCNNGA | 5 cut(s) | 200, 487, 527, 812, 890 |
| Hpy8I | GTNNAC | 2 cut(s) | 673, 826 |
| HpyAV | CCTTC | 5 cut(s) | 149, 312, 326, 442, 797 |
| HpyCH4IV | ACGT | 6 cut(s) | 184, 301, 586, 604, 622, 822 |
| HpyCH4V | TGCA | 4 cut(s) | 457, 617, 658, 839 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 465, 867 |
| HpySE526I | ACGT | 6 cut(s) | 184, 301, 586, 604, 622, 822 |
| Hsp92II | CATG | 7 cut(s) | 203, 289, 617, 638, 647, 687, 815 |
| HspAI | GCGC | 1 cut(s) | 289 |
| Ksp22I | TGATCA | 1 cut(s) | 444 |
| Kzo9I | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| LpnPI | CCDG | 5 cut(s) | 115, 407, 487, 495, 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 758 |
| LweI | GCATC | 4 cut(s) | 76, 160, 645, 868 |
| MaeI | CTAG | 3 cut(s) | 215, 221, 386 |
| MaeII | ACGT | 6 cut(s) | 184, 301, 586, 604, 622, 822 |
| MaeIII | GTNAC | 1 cut(s) | 269 |
| MalI | GATC | 5 cut(s) | 117, 344, 446, 594, 642 |
| MboI | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| MboII | GAAGA | 2 cut(s) | 160, 812 |
| MfeI | CAATTG | 1 cut(s) | 834 |
| MluCI | AATT | 7 cut(s) | 161, 307, 370, 522, 698, 751, 834 |
| MlyI | GAGTC | 2 cut(s) | 346, 779 |
| MmeI | TCCRAC | 1 cut(s) | 384 |
| MnlI | CCTC | 6 cut(s) | 96, 523, 753, 778, 800, 850 |
| MseI | TTAA | 3 cut(s) | 92, 177, 293 |
| MspR9I | CCNGG | 1 cut(s) | 502 |
| MunI | CAATTG | 1 cut(s) | 834 |
| MvaI | CCWGG | 1 cut(s) | 502 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| NdeII | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| NlaIII | CATG | 7 cut(s) | 203, 289, 617, 638, 647, 687, 815 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| NspI | RCATGY | 1 cut(s) | 289 |
| PagI | TCATGA | 2 cut(s) | 199, 811 |
| PfeI | GAWTC | 3 cut(s) | 240, 423, 481 |
| PkrI | GCNGC | 1 cut(s) | 748 |
| PleI | GAGTC | 2 cut(s) | 346, 778 |
| PmaCI | CACGTG | 2 cut(s) | 605, 623 |
| PmlI | CACGTG | 2 cut(s) | 605, 623 |
| PpsI | GAGTC | 2 cut(s) | 346, 778 |
| Ppu21I | YACGTR | 2 cut(s) | 605, 623 |
| Psp6I | CCWGG | 1 cut(s) | 500 |
| PspCI | CACGTG | 2 cut(s) | 605, 623 |
| PspFI | CCCAGC | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 500 |
| PspPI | GGNCC | 1 cut(s) | 504 |
| RsaI | GTAC | 3 cut(s) | 137, 384, 716 |
| RsaNI | GTAC | 3 cut(s) | 136, 383, 715 |
| SaqAI | TTAA | 3 cut(s) | 92, 177, 293 |
| SatI | GCNGC | 1 cut(s) | 747 |
| Sau3AI | GATC | 5 cut(s) | 115, 342, 444, 592, 640 |
| Sau96I | GGNCC | 1 cut(s) | 504 |
| SchI | GAGTC | 2 cut(s) | 346, 779 |
| ScrFI | CCNGG | 1 cut(s) | 502 |
| SfaNI | GCATC | 4 cut(s) | 76, 160, 645, 868 |
| SfcI | CTRYAG | 1 cut(s) | 688 |
| Sse9I | AATT | 7 cut(s) | 161, 307, 370, 522, 698, 751, 834 |
| SsiI | CCGC | 1 cut(s) | 244 |
| SspMI | CTAG | 3 cut(s) | 215, 221, 386 |
| StyD4I | CCNGG | 1 cut(s) | 500 |
| TaiI | ACGT | 6 cut(s) | 187, 304, 589, 607, 625, 825 |
| TasI | AATT | 7 cut(s) | 161, 307, 370, 522, 698, 751, 834 |
| TatI | WGTACW | 1 cut(s) | 382 |
| TfiI | GAWTC | 3 cut(s) | 240, 423, 481 |
| Tru1I | TTAA | 3 cut(s) | 92, 177, 293 |
| Tru9I | TTAA | 3 cut(s) | 92, 177, 293 |
| TscAI | CASTG | 4 cut(s) | 37, 236, 274, 514 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| TseI | GCWGC | 1 cut(s) | 746 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 6 cut(s) | 75, 188, 563, 691, 693, 711 |
| TspRI | CASTG | 4 cut(s) | 37, 236, 274, 514 |
| XapI | RAATTY | 2 cut(s) | 522, 698 |
| XceI | RCATGY | 1 cut(s) | 289 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 620 |
| XspI | CTAG | 3 cut(s) | 215, 221, 386 |