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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 133 |
| Acc36I | ACCTGC | 1 cut(s) | 133 |
| AccII | CGCG | 2 cut(s) | 165, 167 |
| AciI | CCGC | 5 cut(s) | 19, 22, 163, 167, 415 |
| AclWI | GGATC | 1 cut(s) | 3 |
| AcoI | YGGCCR | 1 cut(s) | 393 |
| AcuI | CTGAAG | 1 cut(s) | 296 |
| AfaI | GTAC | 1 cut(s) | 308 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 301, 391, 402 |
| AflII | CTTAAG | 2 cut(s) | 347, 467 |
| AgsI | TTSAA | 3 cut(s) | 60, 93, 448 |
| AjiI | CACGTC | 1 cut(s) | 476 |
| Alw21I | GWGCWC | 1 cut(s) | 143 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| AlwI | GGATC | 1 cut(s) | 3 |
| Ama87I | CYCGRG | 1 cut(s) | 115 |
| AoxI | GGCC | 2 cut(s) | 168, 393 |
| ApeKI | GCWGC | 1 cut(s) | 152 |
| AspLEI | GCGC | 1 cut(s) | 167 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| AsuHPI | GGTGA | 1 cut(s) | 259 |
| AvaI | CYCGRG | 1 cut(s) | 115 |
| Bbv12I | GWGCWC | 1 cut(s) | 143 |
| BbvI | GCAGC | 1 cut(s) | 164 |
| BccI | CCATC | 2 cut(s) | 165, 244 |
| BceAI | ACGGC | 1 cut(s) | 380 |
| BclI | TGATCA | 1 cut(s) | 52 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfrI | CTTAAG | 2 cut(s) | 347, 467 |
| BfuAI | ACCTGC | 1 cut(s) | 133 |
| BisI | GCNGC | 3 cut(s) | 22, 153, 168 |
| BlsI | GCNGC | 3 cut(s) | 23, 154, 169 |
| BmeT110I | CYCGRG | 1 cut(s) | 115 |
| BmgBI | CACGTC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| BmiI | GGNNCC | 1 cut(s) | 171 |
| BpmI | CTGGAG | 2 cut(s) | 49, 82 |
| Bsa29I | ATCGAT | 2 cut(s) | 38, 84 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 301, 391, 402 |
| Bse1I | ACTGG | 1 cut(s) | 396 |
| BseCI | ATCGAT | 2 cut(s) | 38, 84 |
| BseGI | GGATG | 2 cut(s) | 157, 346 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 301, 391, 402 |
| BseMII | CTCAG | 2 cut(s) | 128, 263 |
| BseNI | ACTGG | 1 cut(s) | 396 |
| BseXI | GCAGC | 1 cut(s) | 164 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| BsgI | GTGCAG | 1 cut(s) | 117 |
| Bsh1236I | CGCG | 2 cut(s) | 165, 167 |
| BshFI | GGCC | 2 cut(s) | 170, 395 |
| BshVI | ATCGAT | 2 cut(s) | 38, 84 |
| BsiHKAI | GWGCWC | 1 cut(s) | 143 |
| BsiHKCI | CYCGRG | 1 cut(s) | 115 |
| BsiSI | CCGG | 1 cut(s) | 25 |
| BslFI | GGGAC | 1 cut(s) | 366 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 301, 391, 402 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmBI | CGTCTC | 1 cut(s) | 482 |
| BsmFI | GGGAC | 1 cut(s) | 366 |
| BsnI | GGCC | 2 cut(s) | 170, 395 |
| BsoBI | CYCGRG | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| BspACI | CCGC | 5 cut(s) | 19, 22, 163, 167, 415 |
| BspANI | GGCC | 2 cut(s) | 170, 395 |
| BspCNI | CTCAG | 2 cut(s) | 129, 264 |
| BspDI | ATCGAT | 2 cut(s) | 38, 84 |
| BspFNI | CGCG | 2 cut(s) | 165, 167 |
| BspHI | TCATGA | 1 cut(s) | 370 |
| BspLI | GGNNCC | 1 cut(s) | 171 |
| BspMI | ACCTGC | 1 cut(s) | 133 |
| BspPI | GGATC | 1 cut(s) | 3 |
| BspTI | CTTAAG | 2 cut(s) | 347, 467 |
| BsrI | ACTGG | 1 cut(s) | 396 |
| BssMI | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| Bst4CI | ACNGT | 3 cut(s) | 300, 336, 540 |
| BstAFI | CTTAAG | 2 cut(s) | 347, 467 |
| BstC8I | GCNNGC | 1 cut(s) | 419 |
| BstDEI | CTNAG | 3 cut(s) | 137, 272, 290 |
| BstF5I | GGATG | 2 cut(s) | 157, 346 |
| BstFNI | CGCG | 2 cut(s) | 165, 167 |
| BstHHI | GCGC | 1 cut(s) | 167 |
| BstKTI | GATC | 7 cut(s) | 11, 38, 42, 55, 84, 88, 289 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 182 |
| BstNSI | RCATGY | 1 cut(s) | 460 |
| BstUI | CGCG | 2 cut(s) | 165, 167 |
| BstV1I | GCAGC | 1 cut(s) | 164 |
| BstX2I | RGATCY | 1 cut(s) | 8 |
| BstYI | RGATCY | 1 cut(s) | 8 |
| Bsu15I | ATCGAT | 2 cut(s) | 38, 84 |
| BsuRI | GGCC | 2 cut(s) | 170, 395 |
| BsuTUI | ATCGAT | 2 cut(s) | 38, 84 |
| BtrI | CACGTC | 1 cut(s) | 476 |
| BtsCI | GGATG | 2 cut(s) | 157, 346 |
| BtsI | GCAGTG | 1 cut(s) | 201 |
| BtsIMutI | CAGTG | 3 cut(s) | 134, 201, 407 |
| BveI | ACCTGC | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 419 |
| CciI | TCATGA | 1 cut(s) | 370 |
| CfoI | GCGC | 1 cut(s) | 167 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| ClaI | ATCGAT | 2 cut(s) | 38, 84 |
| Csp6I | GTAC | 1 cut(s) | 307 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 469, 504 |
| CviAII | CATG | 3 cut(s) | 371, 457, 530 |
| CviJI | RGCY | 8 cut(s) | 32, 69, 102, 155, 170, 294, 395, 534 |
| CviKI_1 | RGCY | 8 cut(s) | 32, 69, 102, 155, 170, 294, 395, 534 |
| CviQI | GTAC | 1 cut(s) | 307 |
| DdeI | CTNAG | 3 cut(s) | 137, 272, 290 |
| DpnI | GATC | 7 cut(s) | 10, 37, 41, 54, 83, 87, 288 |
| DpnII | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| EaeI | YGGCCR | 1 cut(s) | 393 |
| Eco57I | CTGAAG | 1 cut(s) | 296 |
| Eco88I | CYCGRG | 1 cut(s) | 115 |
| Esp3I | CGTCTC | 1 cut(s) | 482 |
| FaeI | CATG | 3 cut(s) | 374, 460, 533 |
| FaiI | YATR | 4 cut(s) | 282, 372, 458, 531 |
| FaqI | GGGAC | 1 cut(s) | 366 |
| FatI | CATG | 3 cut(s) | 370, 456, 529 |
| FauI | CCCGC | 1 cut(s) | 170 |
| FbaI | TGATCA | 1 cut(s) | 52 |
| Fnu4HI | GCNGC | 3 cut(s) | 22, 153, 168 |
| FokI | GGATG | 2 cut(s) | 144, 353 |
| Fsp4HI | GCNGC | 3 cut(s) | 22, 153, 168 |
| GlaI | GCGC | 1 cut(s) | 166 |
| GluI | GCNGC | 3 cut(s) | 22, 153, 168 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 2 cut(s) | 49, 82 |
| HaeIII | GGCC | 2 cut(s) | 170, 395 |
| HapII | CCGG | 1 cut(s) | 25 |
| HhaI | GCGC | 1 cut(s) | 167 |
| Hin1II | CATG | 3 cut(s) | 374, 460, 533 |
| Hin6I | GCGC | 1 cut(s) | 165 |
| HinP1I | GCGC | 1 cut(s) | 165 |
| HinfI | GANTC | 2 cut(s) | 118, 411 |
| HpaII | CCGG | 1 cut(s) | 25 |
| HphI | GGTGA | 1 cut(s) | 259 |
| Hpy166II | GTNNAC | 1 cut(s) | 122 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 273 |
| Hpy188III | TCNNGA | 2 cut(s) | 371, 520 |
| Hpy8I | GTNNAC | 1 cut(s) | 122 |
| HpyAV | CCTTC | 3 cut(s) | 320, 486, 526 |
| HpyCH4III | ACNGT | 3 cut(s) | 300, 336, 540 |
| HpyCH4IV | ACGT | 2 cut(s) | 355, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 134, 176 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 182 |
| HpyF3I | CTNAG | 3 cut(s) | 137, 272, 290 |
| HpySE526I | ACGT | 2 cut(s) | 355, 475 |
| Hsp92II | CATG | 3 cut(s) | 374, 460, 533 |
| HspAI | GCGC | 1 cut(s) | 165 |
| Ksp22I | TGATCA | 1 cut(s) | 52 |
| Kzo9I | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| LmnI | GCTCC | 1 cut(s) | 468 |
| Lsp1109I | GCAGC | 1 cut(s) | 164 |
| MaeII | ACGT | 2 cut(s) | 355, 475 |
| MalI | GATC | 7 cut(s) | 10, 37, 41, 54, 83, 87, 288 |
| MboI | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| MboII | GAAGA | 2 cut(s) | 91, 518 |
| MflI | RGATCY | 1 cut(s) | 8 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MluCI | AATT | 1 cut(s) | 481 |
| MlyI | GAGTC | 1 cut(s) | 127 |
| MnlI | CCTC | 6 cut(s) | 73, 80, 106, 113, 267, 392 |
| MseI | TTAA | 4 cut(s) | 263, 317, 348, 468 |
| MspCI | CTTAAG | 2 cut(s) | 347, 467 |
| MspI | CCGG | 1 cut(s) | 25 |
| MvnI | CGCG | 2 cut(s) | 165, 167 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 182 |
| NdeII | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| NlaIII | CATG | 3 cut(s) | 374, 460, 533 |
| NlaIV | GGNNCC | 1 cut(s) | 171 |
| NspI | RCATGY | 1 cut(s) | 460 |
| PagI | TCATGA | 1 cut(s) | 370 |
| PaqCI | CACCTGC | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 411 |
| PkrI | GCNGC | 3 cut(s) | 23, 154, 169 |
| PleI | GAGTC | 1 cut(s) | 126 |
| PpsI | GAGTC | 1 cut(s) | 126 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspN4I | GGNNCC | 1 cut(s) | 171 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| PsuI | RGATCY | 1 cut(s) | 8 |
| RsaI | GTAC | 1 cut(s) | 308 |
| RsaNI | GTAC | 1 cut(s) | 307 |
| SaqAI | TTAA | 4 cut(s) | 263, 317, 348, 468 |
| SatI | GCNGC | 3 cut(s) | 22, 153, 168 |
| Sau3AI | GATC | 7 cut(s) | 8, 35, 39, 52, 81, 85, 286 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| SchI | GAGTC | 1 cut(s) | 127 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| SetI | ASST | 8 cut(s) | 65, 98, 127, 249, 312, 358, 478, 518 |
| SmlI | CTYRAG | 2 cut(s) | 347, 467 |
| SmoI | CTYRAG | 2 cut(s) | 347, 467 |
| Sse9I | AATT | 1 cut(s) | 481 |
| SsiI | CCGC | 5 cut(s) | 19, 22, 163, 167, 415 |
| TaaI | ACNGT | 3 cut(s) | 300, 336, 540 |
| TaiI | ACGT | 2 cut(s) | 358, 478 |
| TaqI | TCGA | 3 cut(s) | 38, 84, 519 |
| TasI | AATT | 1 cut(s) | 481 |
| TauI | GCSGC | 2 cut(s) | 24, 170 |
| TfiI | GAWTC | 1 cut(s) | 411 |
| Tru1I | TTAA | 4 cut(s) | 263, 317, 348, 468 |
| Tru9I | TTAA | 4 cut(s) | 263, 317, 348, 468 |
| TscAI | CASTG | 3 cut(s) | 141, 208, 407 |
| TseI | GCWGC | 1 cut(s) | 152 |
| TspDTI | ATGAA | 2 cut(s) | 359, 518 |
| TspGWI | ACGGA | 1 cut(s) | 91 |
| TspRI | CASTG | 3 cut(s) | 141, 208, 407 |
| Vha464I | CTTAAG | 2 cut(s) | 347, 467 |
| XceI | RCATGY | 1 cut(s) | 460 |