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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 315 |
| AciI | CCGC | 3 cut(s) | 20, 110, 113 |
| AclWI | GGATC | 3 cut(s) | 73, 424, 674 |
| AcsI | RAATTY | 1 cut(s) | 609 |
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AcyI | GRCGYC | 1 cut(s) | 618 |
| AfaI | GTAC | 1 cut(s) | 161 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 70, 169, 315 |
| AflIII | ACRYGT | 1 cut(s) | 673 |
| AgsI | TTSAA | 3 cut(s) | 361, 523, 577 |
| AhlI | ACTAGT | 1 cut(s) | 472 |
| AjiI | CACGTC | 2 cut(s) | 389, 674 |
| AjnI | CCWGG | 1 cut(s) | 587 |
| AluBI | AGCT | 2 cut(s) | 330, 551 |
| AluI | AGCT | 2 cut(s) | 330, 551 |
| Alw26I | GTCTC | 3 cut(s) | 68, 100, 395 |
| AlwI | GGATC | 3 cut(s) | 73, 424, 674 |
| ApeKI | GCWGC | 1 cut(s) | 14 |
| ApoI | RAATTY | 1 cut(s) | 609 |
| AspLEI | GCGC | 2 cut(s) | 19, 41 |
| AspS9I | GGNCC | 1 cut(s) | 251 |
| AsuHPI | GGTGA | 1 cut(s) | 653 |
| AvaII | GGWCC | 1 cut(s) | 251 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 143, 176 |
| BbvI | GCAGC | 1 cut(s) | 26 |
| BccI | CCATC | 2 cut(s) | 171, 224 |
| BciT130I | CCWGG | 1 cut(s) | 589 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BcoDI | GTCTC | 3 cut(s) | 68, 100, 395 |
| BcuI | ACTAGT | 1 cut(s) | 472 |
| BfaI | CTAG | 2 cut(s) | 42, 473 |
| BfoI | RGCGCY | 2 cut(s) | 20, 42 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 197 |
| BisI | GCNGC | 3 cut(s) | 15, 20, 113 |
| BlsI | GCNGC | 3 cut(s) | 16, 21, 114 |
| Bme1390I | CCNGG | 1 cut(s) | 589 |
| Bme18I | GGWCC | 1 cut(s) | 251 |
| BmgBI | CACGTC | 2 cut(s) | 389, 674 |
| BmgT120I | GGNCC | 1 cut(s) | 251 |
| BmrFI | CCNGG | 1 cut(s) | 589 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BsaHI | GRCGYC | 1 cut(s) | 618 |
| BsaI | GGTCTC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 1 cut(s) | 23 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 70, 169, 315 |
| Bse1I | ACTGG | 1 cut(s) | 481 |
| BseBI | CCWGG | 1 cut(s) | 589 |
| BseDI | CCNNGG | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 70, 169, 315 |
| BseNI | ACTGG | 1 cut(s) | 481 |
| BseRI | GAGGAG | 1 cut(s) | 43 |
| BseXI | GCAGC | 1 cut(s) | 26 |
| BsiSI | CCGG | 1 cut(s) | 103 |
| BslFI | GGGAC | 3 cut(s) | 71, 279, 613 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 70, 169, 315 |
| BsmAI | GTCTC | 3 cut(s) | 68, 100, 395 |
| BsmBI | CGTCTC | 2 cut(s) | 68, 395 |
| BsmFI | GGGAC | 3 cut(s) | 71, 279, 613 |
| Bso31I | GGTCTC | 1 cut(s) | 100 |
| Bsp143I | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| Bsp19I | CCATGG | 1 cut(s) | 23 |
| BspACI | CCGC | 3 cut(s) | 20, 110, 113 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 73, 424, 674 |
| BspTNI | GGTCTC | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 481 |
| BssECI | CCNNGG | 1 cut(s) | 23 |
| BssMI | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| BssNI | GRCGYC | 1 cut(s) | 618 |
| BssT1I | CCWWGG | 1 cut(s) | 23 |
| Bst2UI | CCWGG | 1 cut(s) | 589 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 255 |
| Bst6I | CTCTTC | 1 cut(s) | 400 |
| BstACI | GRCGYC | 1 cut(s) | 618 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 1 cut(s) | 552 |
| BstDSI | CCRYGG | 1 cut(s) | 23 |
| BstH2I | RGCGCY | 2 cut(s) | 20, 42 |
| BstHHI | GCGC | 2 cut(s) | 19, 41 |
| BstKTI | GATC | 5 cut(s) | 81, 120, 432, 534, 682 |
| BstMAI | GTCTC | 3 cut(s) | 68, 100, 395 |
| BstMBI | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstNI | CCWGG | 1 cut(s) | 589 |
| BstSCI | CCNGG | 1 cut(s) | 587 |
| BstV1I | GCAGC | 1 cut(s) | 26 |
| BtgI | CCRYGG | 1 cut(s) | 23 |
| BtrI | CACGTC | 2 cut(s) | 389, 674 |
| BtsI | GCAGTG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 3 cut(s) | 210, 231, 320 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 2 cut(s) | 19, 41 |
| Cfr13I | GGNCC | 1 cut(s) | 251 |
| CseI | GACGC | 1 cut(s) | 626 |
| Csp6I | GTAC | 1 cut(s) | 160 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 382, 417 |
| CviAII | CATG | 3 cut(s) | 24, 262, 284 |
| CviJI | RGCY | 4 cut(s) | 330, 490, 551, 592 |
| CviKI_1 | RGCY | 4 cut(s) | 330, 490, 551, 592 |
| CviQI | GTAC | 1 cut(s) | 160 |
| DdeI | CTNAG | 1 cut(s) | 552 |
| DpnI | GATC | 5 cut(s) | 80, 119, 431, 533, 681 |
| DpnII | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| Eam1104I | CTCTTC | 1 cut(s) | 400 |
| EarI | CTCTTC | 1 cut(s) | 400 |
| Eco130I | CCWWGG | 1 cut(s) | 23 |
| Eco31I | GGTCTC | 1 cut(s) | 100 |
| Eco47I | GGWCC | 1 cut(s) | 251 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| EcoRII | CCWGG | 1 cut(s) | 587 |
| EcoT14I | CCWWGG | 1 cut(s) | 23 |
| ErhI | CCWWGG | 1 cut(s) | 23 |
| Esp3I | CGTCTC | 2 cut(s) | 68, 395 |
| FaeI | CATG | 3 cut(s) | 27, 265, 287 |
| FaqI | GGGAC | 3 cut(s) | 71, 279, 613 |
| FatI | CATG | 3 cut(s) | 23, 261, 283 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 20, 113 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 20, 113 |
| FspBI | CTAG | 2 cut(s) | 42, 473 |
| GlaI | GCGC | 2 cut(s) | 18, 40 |
| GluI | GCNGC | 3 cut(s) | 15, 20, 113 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeII | RGCGCY | 2 cut(s) | 20, 42 |
| HapII | CCGG | 1 cut(s) | 103 |
| HgaI | GACGC | 1 cut(s) | 626 |
| HhaI | GCGC | 2 cut(s) | 19, 41 |
| Hin1I | GRCGYC | 1 cut(s) | 618 |
| Hin1II | CATG | 3 cut(s) | 27, 265, 287 |
| Hin6I | GCGC | 2 cut(s) | 17, 39 |
| HinP1I | GCGC | 2 cut(s) | 17, 39 |
| HindIII | AAGCTT | 1 cut(s) | 328 |
| HinfI | GANTC | 3 cut(s) | 33, 439, 510 |
| HpaII | CCGG | 1 cut(s) | 103 |
| HphI | GGTGA | 1 cut(s) | 653 |
| Hpy166II | GTNNAC | 1 cut(s) | 478 |
| Hpy188I | TCNGA | 3 cut(s) | 125, 139, 178 |
| Hpy188III | TCNNGA | 3 cut(s) | 146, 284, 614 |
| Hpy8I | GTNNAC | 1 cut(s) | 478 |
| Hpy99I | CGWCG | 2 cut(s) | 102, 125 |
| HpyAV | CCTTC | 3 cut(s) | 64, 143, 529 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 255 |
| HpyCH4IV | ACGT | 3 cut(s) | 268, 388, 673 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 14, 376, 544, 659 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 1 cut(s) | 552 |
| HpySE526I | ACGT | 3 cut(s) | 268, 388, 673 |
| Hsp92I | GRCGYC | 1 cut(s) | 618 |
| Hsp92II | CATG | 3 cut(s) | 27, 265, 287 |
| HspAI | GCGC | 2 cut(s) | 17, 39 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| LmnI | GCTCC | 2 cut(s) | 300, 548 |
| Lsp1109I | GCAGC | 1 cut(s) | 26 |
| MaeI | CTAG | 2 cut(s) | 42, 473 |
| MaeII | ACGT | 3 cut(s) | 268, 388, 673 |
| MaeIII | GTNAC | 1 cut(s) | 223 |
| MalI | GATC | 5 cut(s) | 80, 119, 431, 533, 681 |
| MboI | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| MboII | GAAGA | 1 cut(s) | 417 |
| MluCI | AATT | 3 cut(s) | 394, 609, 622 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MmeI | TCCRAC | 3 cut(s) | 103, 117, 649 |
| MnlI | CCTC | 5 cut(s) | 21, 38, 48, 549, 559 |
| MseI | TTAA | 1 cut(s) | 461 |
| MspI | CCGG | 1 cut(s) | 103 |
| MspR9I | CCNGG | 1 cut(s) | 589 |
| MvaI | CCWGG | 1 cut(s) | 589 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NcoI | CCATGG | 1 cut(s) | 23 |
| NdeII | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| NlaIII | CATG | 3 cut(s) | 27, 265, 287 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 74 |
| PfeI | GAWTC | 2 cut(s) | 33, 510 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 315 |
| PkrI | GCNGC | 3 cut(s) | 16, 21, 114 |
| PleI | GAGTC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 433 |
| Psp6I | CCWGG | 1 cut(s) | 587 |
| PspGI | CCWGG | 1 cut(s) | 587 |
| PspPI | GGNCC | 1 cut(s) | 251 |
| RsaI | GTAC | 1 cut(s) | 161 |
| RsaNI | GTAC | 1 cut(s) | 160 |
| SaqAI | TTAA | 1 cut(s) | 461 |
| SatI | GCNGC | 3 cut(s) | 15, 20, 113 |
| Sau3AI | GATC | 5 cut(s) | 78, 117, 429, 531, 679 |
| Sau96I | GGNCC | 1 cut(s) | 251 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 1 cut(s) | 589 |
| SinI | GGWCC | 1 cut(s) | 251 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| SpeI | ACTAGT | 1 cut(s) | 472 |
| Sse9I | AATT | 3 cut(s) | 394, 609, 622 |
| SsiI | CCGC | 3 cut(s) | 20, 110, 113 |
| SspMI | CTAG | 2 cut(s) | 42, 473 |
| StyD4I | CCNGG | 1 cut(s) | 587 |
| StyI | CCWWGG | 1 cut(s) | 23 |
| TaaI | ACNGT | 2 cut(s) | 8, 255 |
| TaiI | ACGT | 3 cut(s) | 271, 391, 676 |
| TasI | AATT | 3 cut(s) | 394, 609, 622 |
| TauI | GCSGC | 2 cut(s) | 22, 115 |
| TfiI | GAWTC | 2 cut(s) | 33, 510 |
| Tru1I | TTAA | 1 cut(s) | 461 |
| Tru9I | TTAA | 1 cut(s) | 461 |
| TscAI | CASTG | 3 cut(s) | 217, 238, 320 |
| TseI | GCWGC | 1 cut(s) | 14 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspRI | CASTG | 3 cut(s) | 217, 238, 320 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 315 |
| VpaK11BI | GGWCC | 1 cut(s) | 251 |
| XapI | RAATTY | 1 cut(s) | 609 |
| XspI | CTAG | 2 cut(s) | 42, 473 |