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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 239 |
| AciI | CCGC | 2 cut(s) | 41, 44 |
| AclWI | GGATC | 2 cut(s) | 114, 317 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AcuI | CTGAAG | 1 cut(s) | 332 |
| AcvI | CACGTG | 1 cut(s) | 97 |
| AfaI | GTAC | 2 cut(s) | 188, 344 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 16, 17 |
| AgsI | TTSAA | 2 cut(s) | 76, 355 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AjnI | CCWGG | 2 cut(s) | 23, 102 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 56, 88 |
| AluBI | AGCT | 2 cut(s) | 33, 330 |
| AluI | AGCT | 2 cut(s) | 33, 330 |
| AlwI | GGATC | 2 cut(s) | 114, 317 |
| Ama87I | CYCGRG | 1 cut(s) | 10 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| AseI | ATTAAT | 1 cut(s) | 84 |
| AspS9I | GGNCC | 2 cut(s) | 7, 100 |
| AsuC2I | CCSGG | 2 cut(s) | 11, 12 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 295 |
| AvaI | CYCGRG | 1 cut(s) | 10 |
| AvaII | GGWCC | 2 cut(s) | 7, 100 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 170, 203 |
| BbrPI | CACGTG | 1 cut(s) | 97 |
| BbsI | GAAGAC | 1 cut(s) | 362 |
| BccI | CCATC | 1 cut(s) | 280 |
| BciT130I | CCWGG | 2 cut(s) | 25, 104 |
| BcnI | CCSGG | 2 cut(s) | 11, 12 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BisI | GCNGC | 1 cut(s) | 42 |
| BlsI | GCNGC | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 4 cut(s) | 11, 12, 25, 104 |
| Bme18I | GGWCC | 2 cut(s) | 7, 100 |
| BmeT110I | CYCGRG | 1 cut(s) | 10 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 2 cut(s) | 7, 100 |
| BmiI | GGNNCC | 2 cut(s) | 9, 22 |
| BmrFI | CCNGG | 4 cut(s) | 11, 12, 25, 104 |
| BmsI | GCATC | 1 cut(s) | 367 |
| BpiI | GAAGAC | 1 cut(s) | 362 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| BpuEI | CTTGAG | 1 cut(s) | 203 |
| BpuMI | CCSGG | 2 cut(s) | 11, 12 |
| BsaAI | YACGTR | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 2 cut(s) | 10, 117 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 16, 17 |
| BseBI | CCWGG | 2 cut(s) | 25, 104 |
| BseDI | CCNNGG | 2 cut(s) | 10, 117 |
| BseGI | GGATG | 1 cut(s) | 382 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 16, 17 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 1 cut(s) | 10 |
| BsiSI | CCGG | 1 cut(s) | 11 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 16, 17 |
| BsoBI | CYCGRG | 1 cut(s) | 10 |
| Bsp143I | GATC | 3 cut(s) | 106, 139, 322 |
| Bsp19I | CCATGG | 1 cut(s) | 117 |
| BspACI | CCGC | 2 cut(s) | 41, 44 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspHI | TCATGA | 1 cut(s) | 395 |
| BspLI | GGNNCC | 2 cut(s) | 9, 22 |
| BspPI | GGATC | 2 cut(s) | 114, 317 |
| BssECI | CCNNGG | 2 cut(s) | 10, 117 |
| BssMI | GATC | 3 cut(s) | 106, 139, 322 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst2UI | CCWGG | 2 cut(s) | 25, 104 |
| Bst4CI | ACNGT | 3 cut(s) | 132, 194, 241 |
| BstBAI | YACGTR | 1 cut(s) | 97 |
| BstDEI | CTNAG | 2 cut(s) | 172, 308 |
| BstDSI | CCRYGG | 1 cut(s) | 117 |
| BstF5I | GGATG | 1 cut(s) | 382 |
| BstKTI | GATC | 3 cut(s) | 109, 142, 325 |
| BstMBI | GATC | 3 cut(s) | 106, 139, 322 |
| BstNI | CCWGG | 2 cut(s) | 25, 104 |
| BstSCI | CCNGG | 4 cut(s) | 9, 10, 23, 102 |
| BstV2I | GAAGAC | 1 cut(s) | 362 |
| BstX2I | RGATCY | 1 cut(s) | 106 |
| BstYI | RGATCY | 1 cut(s) | 106 |
| BtgI | CCRYGG | 1 cut(s) | 117 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 382 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| CciI | TCATGA | 1 cut(s) | 395 |
| Cfr13I | GGNCC | 2 cut(s) | 7, 100 |
| Cfr9I | CCCGGG | 1 cut(s) | 10 |
| Csp6I | GTAC | 2 cut(s) | 187, 343 |
| CviAII | CATG | 3 cut(s) | 61, 118, 396 |
| CviJI | RGCY | 2 cut(s) | 33, 330 |
| CviKI_1 | RGCY | 2 cut(s) | 33, 330 |
| CviQI | GTAC | 2 cut(s) | 187, 343 |
| DdeI | CTNAG | 2 cut(s) | 172, 308 |
| DpnI | GATC | 3 cut(s) | 108, 141, 324 |
| DpnII | GATC | 3 cut(s) | 106, 139, 322 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 239 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 239 |
| EciI | GGCGGA | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco47I | GGWCC | 2 cut(s) | 7, 100 |
| Eco57I | CTGAAG | 1 cut(s) | 332 |
| Eco72I | CACGTG | 1 cut(s) | 97 |
| Eco88I | CYCGRG | 1 cut(s) | 10 |
| EcoO109I | RGGNCCY | 1 cut(s) | 7 |
| EcoRII | CCWGG | 2 cut(s) | 23, 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| FaeI | CATG | 3 cut(s) | 64, 121, 399 |
| FaiI | YATR | 5 cut(s) | 62, 119, 209, 318, 397 |
| FatI | CATG | 3 cut(s) | 60, 117, 395 |
| Fnu4HI | GCNGC | 1 cut(s) | 42 |
| FokI | GGATG | 1 cut(s) | 389 |
| Fsp4HI | GCNGC | 1 cut(s) | 42 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GluI | GCNGC | 1 cut(s) | 42 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HapII | CCGG | 1 cut(s) | 11 |
| Hin1II | CATG | 3 cut(s) | 64, 121, 399 |
| HinfI | GANTC | 2 cut(s) | 170, 254 |
| HpaII | CCGG | 1 cut(s) | 11 |
| HphI | GGTGA | 2 cut(s) | 235, 295 |
| Hpy166II | GTNNAC | 1 cut(s) | 100 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 205 |
| Hpy188III | TCNNGA | 1 cut(s) | 396 |
| Hpy8I | GTNNAC | 1 cut(s) | 100 |
| HpyAV | CCTTC | 1 cut(s) | 356 |
| HpyCH4III | ACNGT | 3 cut(s) | 132, 194, 241 |
| HpyCH4IV | ACGT | 3 cut(s) | 66, 96, 334 |
| HpyF3I | CTNAG | 2 cut(s) | 172, 308 |
| HpySE526I | ACGT | 3 cut(s) | 66, 96, 334 |
| Hsp92II | CATG | 3 cut(s) | 64, 121, 399 |
| Kzo9I | GATC | 3 cut(s) | 106, 139, 322 |
| LpnPI | CCDG | 6 cut(s) | 10, 24, 37, 89, 116, 165 |
| LweI | GCATC | 1 cut(s) | 367 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeII | ACGT | 3 cut(s) | 66, 96, 334 |
| MaeIII | GTNAC | 2 cut(s) | 126, 241 |
| MalI | GATC | 3 cut(s) | 108, 141, 324 |
| MboI | GATC | 3 cut(s) | 106, 139, 322 |
| MboII | GAAGA | 2 cut(s) | 188, 367 |
| MflI | RGATCY | 1 cut(s) | 106 |
| MluCI | AATT | 2 cut(s) | 155, 368 |
| MlyI | GAGTC | 2 cut(s) | 164, 248 |
| MmeI | TCCRAC | 1 cut(s) | 176 |
| MseI | TTAA | 2 cut(s) | 84, 299 |
| MslI | CAYNNNNRTG | 2 cut(s) | 59, 65 |
| MspI | CCGG | 1 cut(s) | 11 |
| MspR9I | CCNGG | 4 cut(s) | 11, 12, 25, 104 |
| MvaI | CCWGG | 2 cut(s) | 25, 104 |
| NciI | CCSGG | 2 cut(s) | 11, 12 |
| NcoI | CCATGG | 1 cut(s) | 117 |
| NdeII | GATC | 3 cut(s) | 106, 139, 322 |
| NlaIII | CATG | 3 cut(s) | 64, 121, 399 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 22 |
| NmuCI | GTSAC | 2 cut(s) | 126, 241 |
| PagI | TCATGA | 1 cut(s) | 395 |
| PkrI | GCNGC | 1 cut(s) | 43 |
| PleI | GAGTC | 2 cut(s) | 164, 248 |
| PmaCI | CACGTG | 1 cut(s) | 97 |
| PmlI | CACGTG | 1 cut(s) | 97 |
| PpsI | GAGTC | 2 cut(s) | 164, 248 |
| Ppu21I | YACGTR | 1 cut(s) | 97 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| PshBI | ATTAAT | 1 cut(s) | 84 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| Psp6I | CCWGG | 2 cut(s) | 23, 102 |
| PspCI | CACGTG | 1 cut(s) | 97 |
| PspGI | CCWGG | 2 cut(s) | 23, 102 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 22 |
| PspPI | GGNCC | 2 cut(s) | 7, 100 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| PsuI | RGATCY | 1 cut(s) | 106 |
| RsaI | GTAC | 2 cut(s) | 188, 344 |
| RsaNI | GTAC | 2 cut(s) | 187, 343 |
| RseI | CAYNNNNRTG | 2 cut(s) | 59, 65 |
| SaqAI | TTAA | 2 cut(s) | 84, 299 |
| SatI | GCNGC | 1 cut(s) | 42 |
| Sau3AI | GATC | 3 cut(s) | 106, 139, 322 |
| Sau96I | GGNCC | 2 cut(s) | 7, 100 |
| SchI | GAGTC | 2 cut(s) | 164, 248 |
| ScrFI | CCNGG | 4 cut(s) | 11, 12, 25, 104 |
| SfaNI | GCATC | 1 cut(s) | 367 |
| SinI | GGWCC | 2 cut(s) | 7, 100 |
| SmaI | CCCGGG | 1 cut(s) | 12 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 59, 65 |
| SmlI | CTYRAG | 1 cut(s) | 182 |
| SmoI | CTYRAG | 1 cut(s) | 182 |
| Sse9I | AATT | 2 cut(s) | 155, 368 |
| SsiI | CCGC | 2 cut(s) | 41, 44 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 4 cut(s) | 9, 10, 23, 102 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 3 cut(s) | 132, 194, 241 |
| TaiI | ACGT | 3 cut(s) | 69, 99, 337 |
| TaqI | TCGA | 4 cut(s) | 29, 51, 142, 148 |
| TasI | AATT | 2 cut(s) | 155, 368 |
| TauI | GCSGC | 1 cut(s) | 44 |
| Tru1I | TTAA | 2 cut(s) | 84, 299 |
| Tru9I | TTAA | 2 cut(s) | 84, 299 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TseFI | GTSAC | 2 cut(s) | 126, 241 |
| Tsp45I | GTSAC | 2 cut(s) | 126, 241 |
| TspDTI | ATGAA | 2 cut(s) | 282, 384 |
| TspMI | CCCGGG | 1 cut(s) | 10 |
| TspRI | CASTG | 1 cut(s) | 244 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 100 |
| VspI | ATTAAT | 1 cut(s) | 84 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XmaI | CCCGGG | 1 cut(s) | 10 |
| XspI | CTAG | 1 cut(s) | 327 |