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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 556 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 357 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 341, 393 |
| AccII | CGCG | 1 cut(s) | 399 |
| AciI | CCGC | 1 cut(s) | 399 |
| AclWI | GGATC | 3 cut(s) | 55, 305, 388 |
| AcuI | CTGAAG | 1 cut(s) | 75 |
| AcvI | CACGTG | 2 cut(s) | 323, 341 |
| AdeI | CACNNNGTG | 1 cut(s) | 341 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 341, 393 |
| AflIII | ACRYGT | 1 cut(s) | 304 |
| AgsI | TTSAA | 3 cut(s) | 154, 176, 208 |
| AjiI | CACGTC | 1 cut(s) | 305 |
| AjnI | CCWGG | 1 cut(s) | 218 |
| AluBI | AGCT | 1 cut(s) | 160 |
| AluI | AGCT | 1 cut(s) | 160 |
| AlwI | GGATC | 3 cut(s) | 55, 305, 388 |
| AoxI | GGCC | 3 cut(s) | 221, 415, 518 |
| ApeKI | GCWGC | 1 cut(s) | 535 |
| AspLEI | GCGC | 2 cut(s) | 9, 399 |
| AspS9I | GGNCC | 2 cut(s) | 416, 518 |
| BbrPI | CACGTG | 2 cut(s) | 323, 341 |
| BbvI | GCAGC | 1 cut(s) | 547 |
| BccI | CCATC | 2 cut(s) | 398, 469 |
| BciT130I | CCWGG | 1 cut(s) | 220 |
| BclI | TGATCA | 1 cut(s) | 162 |
| BfaI | CTAG | 5 cut(s) | 104, 122, 245, 300, 420 |
| BfmI | CTRYAG | 1 cut(s) | 499 |
| BisI | GCNGC | 1 cut(s) | 536 |
| BlsI | GCNGC | 1 cut(s) | 537 |
| Bme1390I | CCNGG | 1 cut(s) | 220 |
| BmgBI | CACGTC | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 2 cut(s) | 416, 518 |
| BmrFI | CCNGG | 1 cut(s) | 220 |
| BmsI | GCATC | 1 cut(s) | 458 |
| BsaAI | YACGTR | 2 cut(s) | 323, 341 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 341, 393 |
| Bse1I | ACTGG | 1 cut(s) | 112 |
| BseBI | CCWGG | 1 cut(s) | 220 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 341, 393 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseNI | ACTGG | 1 cut(s) | 112 |
| BseXI | GCAGC | 1 cut(s) | 547 |
| Bsh1236I | CGCG | 1 cut(s) | 399 |
| BshFI | GGCC | 3 cut(s) | 223, 417, 520 |
| BslFI | GGGAC | 1 cut(s) | 363 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 341, 393 |
| BsmFI | GGGAC | 1 cut(s) | 363 |
| BsnI | GGCC | 3 cut(s) | 223, 417, 520 |
| Bsp143I | GATC | 4 cut(s) | 60, 162, 310, 380 |
| BspACI | CCGC | 1 cut(s) | 399 |
| BspANI | GGCC | 3 cut(s) | 223, 417, 520 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspFNI | CGCG | 1 cut(s) | 399 |
| BspPI | GGATC | 3 cut(s) | 55, 305, 388 |
| BsrI | ACTGG | 1 cut(s) | 112 |
| BssMI | GATC | 4 cut(s) | 60, 162, 310, 380 |
| Bst2UI | CCWGG | 1 cut(s) | 220 |
| Bst4CI | ACNGT | 2 cut(s) | 215, 391 |
| BstBAI | YACGTR | 2 cut(s) | 323, 341 |
| BstC8I | GCNNGC | 1 cut(s) | 415 |
| BstDEI | CTNAG | 2 cut(s) | 183, 453 |
| BstFNI | CGCG | 1 cut(s) | 399 |
| BstHHI | GCGC | 2 cut(s) | 9, 399 |
| BstKTI | GATC | 4 cut(s) | 63, 165, 313, 383 |
| BstMBI | GATC | 4 cut(s) | 60, 162, 310, 380 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 296, 532 |
| BstNI | CCWGG | 1 cut(s) | 220 |
| BstSCI | CCNGG | 1 cut(s) | 218 |
| BstSFI | CTRYAG | 1 cut(s) | 499 |
| BstUI | CGCG | 1 cut(s) | 399 |
| BstV1I | GCAGC | 1 cut(s) | 547 |
| BstX2I | RGATCY | 1 cut(s) | 380 |
| BstYI | RGATCY | 1 cut(s) | 380 |
| BsuRI | GGCC | 3 cut(s) | 223, 417, 520 |
| BtrI | CACGTC | 1 cut(s) | 305 |
| BtsI | GCAGTG | 1 cut(s) | 521 |
| BtsIMutI | CAGTG | 3 cut(s) | 220, 387, 521 |
| Cac8I | GCNNGC | 1 cut(s) | 415 |
| CfoI | GCGC | 2 cut(s) | 9, 399 |
| Cfr13I | GGNCC | 2 cut(s) | 416, 518 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 13, 48 |
| CviAII | CATG | 3 cut(s) | 353, 428, 495 |
| DdeI | CTNAG | 2 cut(s) | 183, 453 |
| DpnI | GATC | 4 cut(s) | 62, 164, 312, 382 |
| DpnII | GATC | 4 cut(s) | 60, 162, 310, 380 |
| DraIII | CACNNNGTG | 1 cut(s) | 341 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 357 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 357 |
| Eco147I | AGGCCT | 1 cut(s) | 223 |
| Eco57I | CTGAAG | 1 cut(s) | 75 |
| Eco72I | CACGTG | 2 cut(s) | 323, 341 |
| EcoRII | CCWGG | 1 cut(s) | 218 |
| FaeI | CATG | 3 cut(s) | 356, 431, 498 |
| FaqI | GGGAC | 1 cut(s) | 363 |
| FatI | CATG | 3 cut(s) | 352, 427, 494 |
| FbaI | TGATCA | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 1 cut(s) | 536 |
| Fsp4HI | GCNGC | 1 cut(s) | 536 |
| FspBI | CTAG | 5 cut(s) | 104, 122, 245, 300, 420 |
| GlaI | GCGC | 2 cut(s) | 8, 398 |
| GluI | GCNGC | 1 cut(s) | 536 |
| HaeIII | GGCC | 3 cut(s) | 223, 417, 520 |
| HhaI | GCGC | 2 cut(s) | 9, 399 |
| Hin1II | CATG | 3 cut(s) | 356, 431, 498 |
| Hin6I | GCGC | 2 cut(s) | 7, 397 |
| HinP1I | GCGC | 2 cut(s) | 7, 397 |
| HinfI | GANTC | 2 cut(s) | 70, 141 |
| Hpy188III | TCNNGA | 2 cut(s) | 64, 245 |
| HpyAV | CCTTC | 1 cut(s) | 160 |
| HpyCH4III | ACNGT | 2 cut(s) | 215, 391 |
| HpyCH4IV | ACGT | 3 cut(s) | 304, 322, 340 |
| HpyCH4V | TGCA | 2 cut(s) | 290, 442 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 296, 532 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 453 |
| HpySE526I | ACGT | 3 cut(s) | 304, 322, 340 |
| Hsp92II | CATG | 3 cut(s) | 356, 431, 498 |
| HspAI | GCGC | 2 cut(s) | 7, 397 |
| Ksp22I | TGATCA | 1 cut(s) | 162 |
| Kzo9I | GATC | 4 cut(s) | 60, 162, 310, 380 |
| LpnPI | CCDG | 6 cut(s) | 77, 125, 205, 232, 237, 399 |
| Lsp1109I | GCAGC | 1 cut(s) | 547 |
| LweI | GCATC | 1 cut(s) | 458 |
| MaeI | CTAG | 5 cut(s) | 104, 122, 245, 300, 420 |
| MaeII | ACGT | 3 cut(s) | 304, 322, 340 |
| MalI | GATC | 4 cut(s) | 62, 164, 312, 382 |
| MboI | GATC | 4 cut(s) | 60, 162, 310, 380 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MflI | RGATCY | 1 cut(s) | 380 |
| MluCI | AATT | 3 cut(s) | 25, 253, 510 |
| MlyI | GAGTC | 1 cut(s) | 64 |
| MmeI | TCCRAC | 1 cut(s) | 463 |
| MnlI | CCTC | 6 cut(s) | 60, 180, 190, 241, 349, 371 |
| MseI | TTAA | 1 cut(s) | 11 |
| MspR9I | CCNGG | 1 cut(s) | 220 |
| MvaI | CCWGG | 1 cut(s) | 220 |
| MvnI | CGCG | 1 cut(s) | 399 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 296, 532 |
| NdeII | GATC | 4 cut(s) | 60, 162, 310, 380 |
| NlaIII | CATG | 3 cut(s) | 356, 431, 498 |
| PceI | AGGCCT | 1 cut(s) | 223 |
| PfeI | GAWTC | 1 cut(s) | 141 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 341, 393 |
| PkrI | GCNGC | 1 cut(s) | 537 |
| PleI | GAGTC | 1 cut(s) | 64 |
| PmaCI | CACGTG | 2 cut(s) | 323, 341 |
| PmlI | CACGTG | 2 cut(s) | 323, 341 |
| PpsI | GAGTC | 1 cut(s) | 64 |
| Ppu21I | YACGTR | 2 cut(s) | 323, 341 |
| PsiI | TTATAA | 1 cut(s) | 556 |
| Psp6I | CCWGG | 1 cut(s) | 218 |
| PspCI | CACGTG | 2 cut(s) | 323, 341 |
| PspGI | CCWGG | 1 cut(s) | 218 |
| PspPI | GGNCC | 2 cut(s) | 416, 518 |
| PsuI | RGATCY | 1 cut(s) | 380 |
| SaqAI | TTAA | 1 cut(s) | 11 |
| SatI | GCNGC | 1 cut(s) | 536 |
| Sau3AI | GATC | 4 cut(s) | 60, 162, 310, 380 |
| Sau96I | GGNCC | 2 cut(s) | 416, 518 |
| SchI | GAGTC | 1 cut(s) | 64 |
| ScrFI | CCNGG | 1 cut(s) | 220 |
| SfaNI | GCATC | 1 cut(s) | 458 |
| SfcI | CTRYAG | 1 cut(s) | 499 |
| Sse9I | AATT | 3 cut(s) | 25, 253, 510 |
| SseBI | AGGCCT | 1 cut(s) | 223 |
| SsiI | CCGC | 1 cut(s) | 399 |
| SspMI | CTAG | 5 cut(s) | 104, 122, 245, 300, 420 |
| StuI | AGGCCT | 1 cut(s) | 223 |
| StyD4I | CCNGG | 1 cut(s) | 218 |
| TaaI | ACNGT | 2 cut(s) | 215, 391 |
| TaiI | ACGT | 3 cut(s) | 307, 325, 343 |
| TasI | AATT | 3 cut(s) | 25, 253, 510 |
| TfiI | GAWTC | 1 cut(s) | 141 |
| Tru1I | TTAA | 1 cut(s) | 11 |
| Tru9I | TTAA | 1 cut(s) | 11 |
| TscAI | CASTG | 3 cut(s) | 220, 394, 528 |
| TseI | GCWGC | 1 cut(s) | 535 |
| TspDTI | ATGAA | 2 cut(s) | 281, 504 |
| TspRI | CASTG | 3 cut(s) | 220, 394, 528 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 341, 393 |
| XbaI | TCTAGA | 1 cut(s) | 244 |
| XspI | CTAG | 5 cut(s) | 104, 122, 245, 300, 420 |