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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 357, 656 |
| AclWI | GGATC | 4 cut(s) | 55, 305, 476, 489 |
| AcsI | RAATTY | 1 cut(s) | 240 |
| AcvI | CACGTG | 1 cut(s) | 341 |
| AdeI | CACNNNGTG | 1 cut(s) | 341 |
| AfaI | GTAC | 2 cut(s) | 436, 551 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 591 |
| AflIII | ACRYGT | 2 cut(s) | 304, 388 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| AjiI | CACGTC | 2 cut(s) | 20, 305 |
| AjnI | CCWGG | 2 cut(s) | 218, 682 |
| AluBI | AGCT | 2 cut(s) | 160, 473 |
| AluI | AGCT | 2 cut(s) | 160, 473 |
| Alw26I | GTCTC | 1 cut(s) | 26 |
| AlwI | GGATC | 4 cut(s) | 55, 305, 476, 489 |
| AoxI | GGCC | 5 cut(s) | 221, 370, 379, 415, 643 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ApoI | RAATTY | 1 cut(s) | 240 |
| AspA2I | CCTAGG | 1 cut(s) | 476 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AspS9I | GGNCC | 6 cut(s) | 370, 380, 416, 440, 644, 694 |
| AsuHPI | GGTGA | 1 cut(s) | 277 |
| AvaII | GGWCC | 2 cut(s) | 440, 694 |
| AvrII | CCTAGG | 1 cut(s) | 476 |
| BamHI | GGATCC | 1 cut(s) | 481 |
| BauI | CACGAG | 1 cut(s) | 203 |
| BbrPI | CACGTG | 1 cut(s) | 341 |
| BccI | CCATC | 1 cut(s) | 398 |
| BceAI | ACGGC | 1 cut(s) | 357 |
| BciT130I | CCWGG | 2 cut(s) | 220, 684 |
| BclI | TGATCA | 1 cut(s) | 162 |
| BcoDI | GTCTC | 1 cut(s) | 26 |
| BfaI | CTAG | 2 cut(s) | 104, 477 |
| BfmI | CTRYAG | 2 cut(s) | 523, 589 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 378 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlnI | CCTAGG | 1 cut(s) | 476 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme1390I | CCNGG | 2 cut(s) | 220, 684 |
| Bme18I | GGWCC | 2 cut(s) | 440, 694 |
| BmgBI | CACGTC | 2 cut(s) | 20, 305 |
| BmgT120I | GGNCC | 6 cut(s) | 370, 380, 416, 440, 644, 694 |
| BmiI | GGNNCC | 3 cut(s) | 442, 457, 483 |
| BmrFI | CCNGG | 2 cut(s) | 220, 684 |
| BmrI | ACTGGG | 1 cut(s) | 438 |
| BmuI | ACTGGG | 1 cut(s) | 438 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 3 cut(s) | 373, 459, 476 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 591 |
| Bse1I | ACTGG | 4 cut(s) | 112, 442, 444, 544 |
| BseBI | CCWGG | 2 cut(s) | 220, 684 |
| BseDI | CCNNGG | 3 cut(s) | 373, 459, 476 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 591 |
| BseMII | CTCAG | 2 cut(s) | 638, 716 |
| BseNI | ACTGG | 4 cut(s) | 112, 442, 444, 544 |
| BsgI | GTGCAG | 1 cut(s) | 485 |
| BshFI | GGCC | 5 cut(s) | 223, 372, 381, 417, 645 |
| BslFI | GGGAC | 3 cut(s) | 244, 363, 426 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 591 |
| BsmAI | GTCTC | 1 cut(s) | 26 |
| BsmBI | CGTCTC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 3 cut(s) | 244, 363, 426 |
| BsnI | GGCC | 5 cut(s) | 223, 372, 381, 417, 645 |
| Bsp143I | GATC | 4 cut(s) | 60, 162, 310, 481 |
| BspANI | GGCC | 5 cut(s) | 223, 372, 381, 417, 645 |
| BspCNI | CTCAG | 2 cut(s) | 637, 715 |
| BspLI | GGNNCC | 3 cut(s) | 442, 457, 483 |
| BspPI | GGATC | 4 cut(s) | 55, 305, 476, 489 |
| BsrI | ACTGG | 4 cut(s) | 112, 442, 444, 544 |
| BssECI | CCNNGG | 3 cut(s) | 373, 459, 476 |
| BssMI | GATC | 4 cut(s) | 60, 162, 310, 481 |
| BssSI | CACGAG | 1 cut(s) | 203 |
| BssT1I | CCWWGG | 2 cut(s) | 459, 476 |
| Bst2BI | CACGAG | 1 cut(s) | 203 |
| Bst2UI | CCWGG | 2 cut(s) | 220, 684 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 2 cut(s) | 415, 568 |
| BstDEI | CTNAG | 3 cut(s) | 574, 624, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 373 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 4 cut(s) | 63, 165, 313, 484 |
| BstMAI | GTCTC | 1 cut(s) | 26 |
| BstMBI | GATC | 4 cut(s) | 60, 162, 310, 481 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 378, 567 |
| BstNI | CCWGG | 2 cut(s) | 220, 684 |
| BstNSI | RCATGY | 1 cut(s) | 392 |
| BstSCI | CCNGG | 2 cut(s) | 218, 682 |
| BstSFI | CTRYAG | 2 cut(s) | 523, 589 |
| BstX2I | RGATCY | 1 cut(s) | 481 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 393 |
| BstYI | RGATCY | 1 cut(s) | 481 |
| BsuRI | GGCC | 5 cut(s) | 223, 372, 381, 417, 645 |
| BtgI | CCRYGG | 1 cut(s) | 373 |
| BtrI | CACGTC | 2 cut(s) | 20, 305 |
| BtsIMutI | CAGTG | 1 cut(s) | 451 |
| Cac8I | GCNNGC | 2 cut(s) | 415, 568 |
| CfoI | GCGC | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 6 cut(s) | 370, 380, 416, 440, 644, 694 |
| Csp6I | GTAC | 2 cut(s) | 435, 550 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 13, 48 |
| CviAII | CATG | 5 cut(s) | 321, 353, 389, 428, 452 |
| CviQI | GTAC | 2 cut(s) | 435, 550 |
| DdeI | CTNAG | 3 cut(s) | 574, 624, 702 |
| DpnI | GATC | 4 cut(s) | 62, 164, 312, 483 |
| DpnII | GATC | 4 cut(s) | 60, 162, 310, 481 |
| DraIII | CACNNNGTG | 1 cut(s) | 341 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 357, 656 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 357, 656 |
| Eco130I | CCWWGG | 2 cut(s) | 459, 476 |
| Eco147I | AGGCCT | 1 cut(s) | 223 |
| Eco47I | GGWCC | 2 cut(s) | 440, 694 |
| Eco72I | CACGTG | 1 cut(s) | 341 |
| EcoO109I | RGGNCCY | 3 cut(s) | 380, 644, 694 |
| EcoRII | CCWGG | 2 cut(s) | 218, 682 |
| EcoT14I | CCWWGG | 2 cut(s) | 459, 476 |
| ErhI | CCWWGG | 2 cut(s) | 459, 476 |
| Esp3I | CGTCTC | 1 cut(s) | 26 |
| FaeI | CATG | 5 cut(s) | 324, 356, 392, 431, 455 |
| FaqI | GGGAC | 3 cut(s) | 244, 363, 426 |
| FatI | CATG | 5 cut(s) | 320, 352, 388, 427, 451 |
| FbaI | TGATCA | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| FspBI | CTAG | 2 cut(s) | 104, 477 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GluI | GCNGC | 1 cut(s) | 5 |
| HaeIII | GGCC | 5 cut(s) | 223, 372, 381, 417, 645 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 5 cut(s) | 324, 356, 392, 431, 455 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HincII | GTYRAC | 1 cut(s) | 661 |
| HindII | GTYRAC | 1 cut(s) | 661 |
| HinfI | GANTC | 2 cut(s) | 141, 605 |
| HphI | GGTGA | 1 cut(s) | 277 |
| Hpy166II | GTNNAC | 2 cut(s) | 208, 661 |
| Hpy188III | TCNNGA | 3 cut(s) | 205, 245, 719 |
| Hpy8I | GTNNAC | 2 cut(s) | 208, 661 |
| HpyAV | CCTTC | 1 cut(s) | 632 |
| HpyCH4IV | ACGT | 4 cut(s) | 19, 304, 340, 714 |
| HpyCH4V | TGCA | 4 cut(s) | 175, 335, 466, 674 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 378, 567 |
| HpyF3I | CTNAG | 3 cut(s) | 574, 624, 702 |
| HpySE526I | ACGT | 4 cut(s) | 19, 304, 340, 714 |
| Hsp92II | CATG | 5 cut(s) | 324, 356, 392, 431, 455 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Ksp22I | TGATCA | 1 cut(s) | 162 |
| Kzo9I | GATC | 4 cut(s) | 60, 162, 310, 481 |
| LmnI | GCTCC | 3 cut(s) | 461, 478, 613 |
| MaeI | CTAG | 2 cut(s) | 104, 477 |
| MaeII | ACGT | 4 cut(s) | 19, 304, 340, 714 |
| MalI | GATC | 4 cut(s) | 62, 164, 312, 483 |
| MboI | GATC | 4 cut(s) | 60, 162, 310, 481 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MfeI | CAATTG | 1 cut(s) | 669 |
| MflI | RGATCY | 1 cut(s) | 481 |
| MluCI | AATT | 2 cut(s) | 240, 669 |
| MlyI | GAGTC | 1 cut(s) | 614 |
| MmeI | TCCRAC | 2 cut(s) | 102, 280 |
| MseI | TTAA | 1 cut(s) | 11 |
| MslI | CAYNNNNRTG | 1 cut(s) | 391 |
| MspR9I | CCNGG | 2 cut(s) | 220, 684 |
| MunI | CAATTG | 1 cut(s) | 669 |
| MvaI | CCWGG | 2 cut(s) | 220, 684 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 378, 567 |
| NdeII | GATC | 4 cut(s) | 60, 162, 310, 481 |
| NlaIII | CATG | 5 cut(s) | 324, 356, 392, 431, 455 |
| NlaIV | GGNNCC | 3 cut(s) | 442, 457, 483 |
| NspI | RCATGY | 1 cut(s) | 392 |
| PceI | AGGCCT | 1 cut(s) | 223 |
| PciI | ACATGT | 1 cut(s) | 388 |
| PfeI | GAWTC | 1 cut(s) | 141 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PleI | GAGTC | 1 cut(s) | 613 |
| PmaCI | CACGTG | 1 cut(s) | 341 |
| PmlI | CACGTG | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 613 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| PpuMI | RGGWCCY | 1 cut(s) | 694 |
| PscI | ACATGT | 1 cut(s) | 388 |
| Psp5II | RGGWCCY | 1 cut(s) | 694 |
| Psp6I | CCWGG | 2 cut(s) | 218, 682 |
| PspCI | CACGTG | 1 cut(s) | 341 |
| PspGI | CCWGG | 2 cut(s) | 218, 682 |
| PspN4I | GGNNCC | 3 cut(s) | 442, 457, 483 |
| PspPI | GGNCC | 6 cut(s) | 370, 380, 416, 440, 644, 694 |
| PspPPI | RGGWCCY | 1 cut(s) | 694 |
| PsuI | RGATCY | 1 cut(s) | 481 |
| RsaI | GTAC | 2 cut(s) | 436, 551 |
| RsaNI | GTAC | 2 cut(s) | 435, 550 |
| RseI | CAYNNNNRTG | 1 cut(s) | 391 |
| SaqAI | TTAA | 1 cut(s) | 11 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 4 cut(s) | 60, 162, 310, 481 |
| Sau96I | GGNCC | 6 cut(s) | 370, 380, 416, 440, 644, 694 |
| SchI | GAGTC | 1 cut(s) | 614 |
| ScrFI | CCNGG | 2 cut(s) | 220, 684 |
| SfcI | CTRYAG | 2 cut(s) | 523, 589 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 378 |
| SinI | GGWCC | 2 cut(s) | 440, 694 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 391 |
| Sse9I | AATT | 2 cut(s) | 240, 669 |
| SseBI | AGGCCT | 1 cut(s) | 223 |
| SspMI | CTAG | 2 cut(s) | 104, 477 |
| StuI | AGGCCT | 1 cut(s) | 223 |
| StyD4I | CCNGG | 2 cut(s) | 218, 682 |
| StyI | CCWWGG | 2 cut(s) | 459, 476 |
| TaiI | ACGT | 4 cut(s) | 22, 307, 343, 717 |
| TasI | AATT | 2 cut(s) | 240, 669 |
| TfiI | GAWTC | 1 cut(s) | 141 |
| Tru1I | TTAA | 1 cut(s) | 11 |
| Tru9I | TTAA | 1 cut(s) | 11 |
| TscAI | CASTG | 1 cut(s) | 451 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 1 cut(s) | 81 |
| TspRI | CASTG | 1 cut(s) | 451 |
| VpaK11BI | GGWCC | 2 cut(s) | 440, 694 |
| XapI | RAATTY | 1 cut(s) | 240 |
| XceI | RCATGY | 1 cut(s) | 392 |
| XmaJI | CCTAGG | 1 cut(s) | 476 |
| XspI | CTAG | 2 cut(s) | 104, 477 |