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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 726, 998 |
| AatII | GACGTC | 1 cut(s) | 1002 |
| AccB1I | GGYRCC | 1 cut(s) | 817 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 762 |
| AccBSI | CCGCTC | 1 cut(s) | 556 |
| AciI | CCGC | 3 cut(s) | 328, 529, 556 |
| AclWI | GGATC | 6 cut(s) | 2, 194, 424, 518, 539, 674 |
| AcsI | RAATTY | 3 cut(s) | 23, 394, 609 |
| AcuI | CTGAAG | 3 cut(s) | 209, 444, 816 |
| AcvI | CACGTG | 1 cut(s) | 692 |
| AcyI | GRCGYC | 1 cut(s) | 999 |
| AfaI | GTAC | 3 cut(s) | 56, 471, 896 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 762 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AgsI | TTSAA | 3 cut(s) | 232, 361, 523 |
| AjiI | CACGTC | 2 cut(s) | 389, 674 |
| AjnI | CCWGG | 1 cut(s) | 587 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 6 cut(s) | 2, 194, 424, 518, 539, 674 |
| AoxI | GGCC | 5 cut(s) | 590, 739, 749, 784, 985 |
| ApeKI | GCWGC | 1 cut(s) | 926 |
| ApoI | RAATTY | 3 cut(s) | 23, 394, 609 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspLEI | GCGC | 3 cut(s) | 378, 768, 782 |
| AspS9I | GGNCC | 4 cut(s) | 146, 739, 749, 785 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| AxyI | CCTNAGG | 1 cut(s) | 615 |
| BaeGI | GKGCMC | 1 cut(s) | 820 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 817 |
| BbrPI | CACGTG | 1 cut(s) | 692 |
| BbsI | GAAGAC | 2 cut(s) | 239, 443 |
| BbvI | GCAGC | 1 cut(s) | 938 |
| BccI | CCATC | 3 cut(s) | 122, 137, 767 |
| BceAI | ACGGC | 1 cut(s) | 726 |
| BciT130I | CCWGG | 1 cut(s) | 589 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 2 cut(s) | 473, 789 |
| BfmI | CTRYAG | 1 cut(s) | 868 |
| BfoI | RGCGCY | 1 cut(s) | 783 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 2 cut(s) | 557, 927 |
| BlpI | GCTNAGC | 1 cut(s) | 552 |
| BlsI | GCNGC | 2 cut(s) | 558, 928 |
| Bme1390I | CCNGG | 1 cut(s) | 589 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgBI | CACGTC | 2 cut(s) | 389, 674 |
| BmgT120I | GGNCC | 4 cut(s) | 146, 739, 749, 785 |
| BmiI | GGNNCC | 1 cut(s) | 819 |
| BmrFI | CCNGG | 1 cut(s) | 589 |
| BmrI | ACTGGG | 1 cut(s) | 120 |
| BmsI | GCATC | 2 cut(s) | 244, 1045 |
| BmuI | ACTGGG | 1 cut(s) | 120 |
| BpiI | GAAGAC | 2 cut(s) | 239, 443 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 692 |
| BsaHI | GRCGYC | 1 cut(s) | 999 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 742 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 762 |
| Bse1I | ACTGG | 2 cut(s) | 126, 481 |
| Bse21I | CCTNAGG | 1 cut(s) | 615 |
| Bse3DI | GCAATG | 2 cut(s) | 818, 862 |
| BseBI | CCWGG | 1 cut(s) | 589 |
| BseDI | CCNNGG | 2 cut(s) | 72, 742 |
| BseGI | GGATG | 1 cut(s) | 259 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 762 |
| BseMI | GCAATG | 2 cut(s) | 818, 862 |
| BseMII | CTCAG | 3 cut(s) | 54, 543, 606 |
| BseNI | ACTGG | 2 cut(s) | 126, 481 |
| BseSI | GKGCMC | 1 cut(s) | 820 |
| BseXI | GCAGC | 1 cut(s) | 938 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 5 cut(s) | 592, 741, 751, 786, 987 |
| BshNI | GGYRCC | 1 cut(s) | 817 |
| BslFI | GGGAC | 2 cut(s) | 279, 732 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 315, 762 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 2 cut(s) | 279, 732 |
| BsnI | GGCC | 5 cut(s) | 592, 741, 751, 786, 987 |
| Bsp1286I | GDGCHC | 1 cut(s) | 820 |
| Bsp143I | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 552 |
| BspACI | CCGC | 3 cut(s) | 328, 529, 556 |
| BspANI | GGCC | 5 cut(s) | 592, 741, 751, 786, 987 |
| BspCNI | CTCAG | 3 cut(s) | 53, 544, 607 |
| BspHI | TCATGA | 2 cut(s) | 283, 730 |
| BspLI | GGNNCC | 1 cut(s) | 819 |
| BspPI | GGATC | 6 cut(s) | 2, 194, 424, 518, 539, 674 |
| BspT107I | GGYRCC | 1 cut(s) | 817 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrBI | CCGCTC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 2 cut(s) | 818, 862 |
| BsrI | ACTGG | 2 cut(s) | 126, 481 |
| BssECI | CCNNGG | 2 cut(s) | 72, 742 |
| BssMI | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| BssNI | GRCGYC | 1 cut(s) | 999 |
| Bst2UI | CCWGG | 1 cut(s) | 589 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 150, 249, 310, 641 |
| BstACI | GRCGYC | 1 cut(s) | 999 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 692 |
| BstC8I | GCNNGC | 3 cut(s) | 332, 784, 913 |
| BstDEI | CTNAG | 4 cut(s) | 40, 552, 615, 822 |
| BstDSI | CCRYGG | 1 cut(s) | 742 |
| BstF5I | GGATG | 1 cut(s) | 259 |
| BstH2I | RGCGCY | 1 cut(s) | 783 |
| BstHHI | GCGC | 3 cut(s) | 378, 768, 782 |
| BstKTI | GATC | 6 cut(s) | 10, 202, 432, 513, 534, 682 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 912 |
| BstNI | CCWGG | 1 cut(s) | 589 |
| BstSCI | CCNGG | 1 cut(s) | 587 |
| BstSFI | CTRYAG | 1 cut(s) | 868 |
| BstSLI | GKGCMC | 1 cut(s) | 820 |
| BstV1I | GCAGC | 1 cut(s) | 938 |
| BstV2I | GAAGAC | 2 cut(s) | 239, 443 |
| Bsu36I | CCTNAGG | 1 cut(s) | 615 |
| BsuRI | GGCC | 5 cut(s) | 592, 741, 751, 786, 987 |
| BtgI | CCRYGG | 1 cut(s) | 742 |
| BtrI | CACGTC | 2 cut(s) | 389, 674 |
| BtsCI | GGATG | 1 cut(s) | 259 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 133, 320 |
| Cac8I | GCNNGC | 3 cut(s) | 332, 784, 913 |
| CciI | TCATGA | 2 cut(s) | 283, 730 |
| CfoI | GCGC | 3 cut(s) | 378, 768, 782 |
| Cfr13I | GGNCC | 4 cut(s) | 146, 739, 749, 785 |
| Csp6I | GTAC | 3 cut(s) | 55, 470, 895 |
| CviAII | CATG | 7 cut(s) | 284, 710, 722, 731, 797, 864, 989 |
| CviQI | GTAC | 3 cut(s) | 55, 470, 895 |
| DdeI | CTNAG | 4 cut(s) | 40, 552, 615, 822 |
| DpnI | GATC | 6 cut(s) | 9, 201, 431, 512, 533, 681 |
| DpnII | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 726, 998 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 726, 998 |
| Eco147I | AGGCCT | 1 cut(s) | 592 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 3 cut(s) | 209, 444, 816 |
| Eco72I | CACGTG | 1 cut(s) | 692 |
| Eco81I | CCTNAGG | 1 cut(s) | 615 |
| EcoO109I | RGGNCCY | 1 cut(s) | 749 |
| EcoRII | CCWGG | 1 cut(s) | 587 |
| FaeI | CATG | 7 cut(s) | 287, 713, 725, 734, 800, 867, 992 |
| FaqI | GGGAC | 2 cut(s) | 279, 732 |
| FatI | CATG | 7 cut(s) | 283, 709, 721, 730, 796, 863, 988 |
| Fnu4HI | GCNGC | 2 cut(s) | 557, 927 |
| FokI | GGATG | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 2 cut(s) | 557, 927 |
| FspBI | CTAG | 2 cut(s) | 473, 789 |
| GlaI | GCGC | 3 cut(s) | 377, 767, 781 |
| GluI | GCNGC | 2 cut(s) | 557, 927 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeII | RGCGCY | 1 cut(s) | 783 |
| HaeIII | GGCC | 5 cut(s) | 592, 741, 751, 786, 987 |
| HhaI | GCGC | 3 cut(s) | 378, 768, 782 |
| Hin1I | GRCGYC | 1 cut(s) | 999 |
| Hin1II | CATG | 7 cut(s) | 287, 713, 725, 734, 800, 867, 992 |
| Hin6I | GCGC | 3 cut(s) | 376, 766, 780 |
| HinP1I | GCGC | 3 cut(s) | 376, 766, 780 |
| HincII | GTYRAC | 1 cut(s) | 1003 |
| HindII | GTYRAC | 1 cut(s) | 1003 |
| HinfI | GANTC | 3 cut(s) | 38, 879, 950 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 1003 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 154 |
| Hpy188III | TCNNGA | 4 cut(s) | 284, 433, 614, 731 |
| Hpy8I | GTNNAC | 1 cut(s) | 1003 |
| HpyAV | CCTTC | 4 cut(s) | 233, 529, 840, 974 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 150, 249, 310, 641 |
| HpyCH4IV | ACGT | 5 cut(s) | 268, 388, 673, 691, 999 |
| HpyCH4V | TGCA | 5 cut(s) | 544, 659, 704, 811, 1016 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 912 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 552, 615, 822 |
| HpySE526I | ACGT | 5 cut(s) | 268, 388, 673, 691, 999 |
| Hsp92I | GRCGYC | 1 cut(s) | 999 |
| Hsp92II | CATG | 7 cut(s) | 287, 713, 725, 734, 800, 867, 992 |
| HspAI | GCGC | 3 cut(s) | 376, 766, 780 |
| Kzo9I | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| Lsp1109I | GCAGC | 1 cut(s) | 938 |
| LweI | GCATC | 2 cut(s) | 244, 1045 |
| MaeI | CTAG | 2 cut(s) | 473, 789 |
| MaeII | ACGT | 5 cut(s) | 268, 388, 673, 691, 999 |
| MaeIII | GTNAC | 1 cut(s) | 128 |
| MalI | GATC | 6 cut(s) | 9, 201, 431, 512, 533, 681 |
| MbiI | CCGCTC | 1 cut(s) | 556 |
| MboI | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| MboII | GAAGA | 3 cut(s) | 244, 431, 448 |
| MfeI | CAATTG | 1 cut(s) | 1011 |
| MhlI | GDGCHC | 1 cut(s) | 820 |
| MluCI | AATT | 5 cut(s) | 23, 394, 609, 931, 1011 |
| MlyI | GAGTC | 3 cut(s) | 32, 888, 959 |
| MmeI | TCCRAC | 2 cut(s) | 35, 577 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 4 cut(s) | 176, 261, 575, 1023 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspR9I | CCNGG | 1 cut(s) | 589 |
| MunI | CAATTG | 1 cut(s) | 1011 |
| MvaI | CCWGG | 1 cut(s) | 589 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 912 |
| NdeII | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| NlaIII | CATG | 7 cut(s) | 287, 713, 725, 734, 800, 867, 992 |
| NlaIV | GGNNCC | 1 cut(s) | 819 |
| NmuCI | GTSAC | 1 cut(s) | 128 |
| PagI | TCATGA | 2 cut(s) | 283, 730 |
| PceI | AGGCCT | 1 cut(s) | 592 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 762 |
| PkrI | GCNGC | 2 cut(s) | 558, 928 |
| PleI | GAGTC | 3 cut(s) | 32, 887, 958 |
| PmaCI | CACGTG | 1 cut(s) | 692 |
| PmlI | CACGTG | 1 cut(s) | 692 |
| PpsI | GAGTC | 3 cut(s) | 32, 887, 958 |
| Ppu21I | YACGTR | 1 cut(s) | 692 |
| Psp6I | CCWGG | 1 cut(s) | 587 |
| PspCI | CACGTG | 1 cut(s) | 692 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 587 |
| PspN4I | GGNNCC | 1 cut(s) | 819 |
| PspPI | GGNCC | 4 cut(s) | 146, 739, 749, 785 |
| RsaI | GTAC | 3 cut(s) | 56, 471, 896 |
| RsaNI | GTAC | 3 cut(s) | 55, 470, 895 |
| SaqAI | TTAA | 4 cut(s) | 176, 261, 575, 1023 |
| SatI | GCNGC | 2 cut(s) | 557, 927 |
| Sau3AI | GATC | 6 cut(s) | 7, 199, 429, 510, 531, 679 |
| Sau96I | GGNCC | 4 cut(s) | 146, 739, 749, 785 |
| SchI | GAGTC | 3 cut(s) | 32, 888, 959 |
| ScrFI | CCNGG | 1 cut(s) | 589 |
| SduI | GDGCHC | 1 cut(s) | 820 |
| SfaNI | GCATC | 2 cut(s) | 244, 1045 |
| SfcI | CTRYAG | 1 cut(s) | 868 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 2 cut(s) | 50, 260 |
| SmoI | CTYRAG | 2 cut(s) | 50, 260 |
| Sse9I | AATT | 5 cut(s) | 23, 394, 609, 931, 1011 |
| SseBI | AGGCCT | 1 cut(s) | 592 |
| SsiI | CCGC | 3 cut(s) | 328, 529, 556 |
| SspMI | CTAG | 2 cut(s) | 473, 789 |
| StuI | AGGCCT | 1 cut(s) | 592 |
| StyD4I | CCNGG | 1 cut(s) | 587 |
| TaaI | ACNGT | 5 cut(s) | 62, 150, 249, 310, 641 |
| TaiI | ACGT | 5 cut(s) | 271, 391, 676, 694, 1002 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 394, 609, 931, 1011 |
| TauI | GCSGC | 1 cut(s) | 559 |
| Tru1I | TTAA | 4 cut(s) | 176, 261, 575, 1023 |
| Tru9I | TTAA | 4 cut(s) | 176, 261, 575, 1023 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 320 |
| TseFI | GTSAC | 1 cut(s) | 128 |
| TseI | GCWGC | 1 cut(s) | 926 |
| Tsp45I | GTSAC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 4 cut(s) | 272, 336, 650, 873 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 320 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 762 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 3 cut(s) | 23, 394, 609 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 2 cut(s) | 473, 789 |
| ZraI | GACGTC | 1 cut(s) | 1000 |