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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 420 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 804, 1028 |
| AatII | GACGTC | 1 cut(s) | 1032 |
| AccB1I | GGYRCC | 1 cut(s) | 895 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 840 |
| AciI | CCGC | 5 cut(s) | 14, 60, 75, 78, 406 |
| AclWI | GGATC | 3 cut(s) | 272, 502, 752 |
| AcoI | YGGCCR | 1 cut(s) | 125 |
| AcsI | RAATTY | 2 cut(s) | 472, 687 |
| AcuI | CTGAAG | 3 cut(s) | 287, 522, 894 |
| AcvI | CACGTG | 2 cut(s) | 770, 788 |
| AcyI | GRCGYC | 1 cut(s) | 1029 |
| AdeI | CACNNNGTG | 1 cut(s) | 788 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 90, 151, 292, 393, 738, 840 |
| AflII | CTTAAG | 1 cut(s) | 338 |
| AgsI | TTSAA | 4 cut(s) | 310, 439, 601, 655 |
| AjiI | CACGTC | 2 cut(s) | 467, 752 |
| AjnI | CCWGG | 1 cut(s) | 665 |
| AluBI | AGCT | 1 cut(s) | 607 |
| AluI | AGCT | 1 cut(s) | 607 |
| AlwI | GGATC | 3 cut(s) | 272, 502, 752 |
| AoxI | GGCC | 6 cut(s) | 125, 668, 817, 826, 862, 1015 |
| ApeKI | GCWGC | 1 cut(s) | 953 |
| ApoI | RAATTY | 2 cut(s) | 472, 687 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 32 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspA2I | CCTAGG | 1 cut(s) | 899 |
| AspLEI | GCGC | 1 cut(s) | 456 |
| AspS9I | GGNCC | 4 cut(s) | 224, 817, 827, 863 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| AvaII | GGWCC | 1 cut(s) | 224 |
| AvrII | CCTAGG | 1 cut(s) | 899 |
| AxyI | CCTNAGG | 1 cut(s) | 693 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 125, 158 |
| BanI | GGYRCC | 1 cut(s) | 895 |
| BbrPI | CACGTG | 2 cut(s) | 770, 788 |
| BbsI | GAAGAC | 2 cut(s) | 317, 521 |
| BbvI | GCAGC | 1 cut(s) | 965 |
| BccI | CCATC | 1 cut(s) | 845 |
| BceAI | ACGGC | 1 cut(s) | 804 |
| BciT130I | CCWGG | 1 cut(s) | 667 |
| BclI | TGATCA | 1 cut(s) | 609 |
| BfaI | CTAG | 4 cut(s) | 282, 551, 867, 900 |
| BfrI | CTTAAG | 1 cut(s) | 338 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 179, 825 |
| BisI | GCNGC | 2 cut(s) | 78, 954 |
| BlnI | CCTAGG | 1 cut(s) | 899 |
| BlsI | GCNGC | 2 cut(s) | 79, 955 |
| Bme1390I | CCNGG | 1 cut(s) | 667 |
| Bme18I | GGWCC | 1 cut(s) | 224 |
| BmgBI | CACGTC | 2 cut(s) | 467, 752 |
| BmgT120I | GGNCC | 4 cut(s) | 224, 817, 827, 863 |
| BmiI | GGNNCC | 2 cut(s) | 897, 905 |
| BmrFI | CCNGG | 1 cut(s) | 667 |
| BmrI | ACTGGG | 1 cut(s) | 301 |
| BmsI | GCATC | 1 cut(s) | 322 |
| BmuI | ACTGGG | 1 cut(s) | 301 |
| BpiI | GAAGAC | 2 cut(s) | 317, 521 |
| BpmI | CTGGAG | 1 cut(s) | 590 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| BsaAI | YACGTR | 2 cut(s) | 770, 788 |
| BsaHI | GRCGYC | 1 cut(s) | 1029 |
| BsaJI | CCNNGG | 2 cut(s) | 122, 899 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 90, 151, 292, 393, 738, 840 |
| Bse1I | ACTGG | 2 cut(s) | 296, 559 |
| Bse21I | CCTNAGG | 1 cut(s) | 693 |
| BseBI | CCWGG | 1 cut(s) | 667 |
| BseDI | CCNNGG | 2 cut(s) | 122, 899 |
| BseGI | GGATG | 1 cut(s) | 337 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 90, 151, 292, 393, 738, 840 |
| BseMII | CTCAG | 2 cut(s) | 254, 684 |
| BseNI | ACTGG | 2 cut(s) | 296, 559 |
| BseRI | GAGGAG | 5 cut(s) | 99, 102, 105, 108, 111 |
| BseXI | GCAGC | 1 cut(s) | 965 |
| BsgI | GTGCAG | 1 cut(s) | 865 |
| BshFI | GGCC | 6 cut(s) | 127, 670, 819, 828, 864, 1017 |
| BshNI | GGYRCC | 1 cut(s) | 895 |
| BslFI | GGGAC | 2 cut(s) | 357, 691 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 90, 151, 292, 393, 738, 840 |
| BsmFI | GGGAC | 2 cut(s) | 357, 691 |
| BsnI | GGCC | 6 cut(s) | 127, 670, 819, 828, 864, 1017 |
| Bsp143I | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| BspACI | CCGC | 5 cut(s) | 14, 60, 75, 78, 406 |
| BspANI | GGCC | 6 cut(s) | 127, 670, 819, 828, 864, 1017 |
| BspCNI | CTCAG | 2 cut(s) | 255, 685 |
| BspHI | TCATGA | 1 cut(s) | 361 |
| BspLI | GGNNCC | 2 cut(s) | 897, 905 |
| BspPI | GGATC | 3 cut(s) | 272, 502, 752 |
| BspT107I | GGYRCC | 1 cut(s) | 895 |
| BspTI | CTTAAG | 1 cut(s) | 338 |
| BsrI | ACTGG | 2 cut(s) | 296, 559 |
| BssECI | CCNNGG | 2 cut(s) | 122, 899 |
| BssMI | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| BssNI | GRCGYC | 1 cut(s) | 1029 |
| BssT1I | CCWWGG | 1 cut(s) | 899 |
| Bst2UI | CCWGG | 1 cut(s) | 667 |
| Bst4CI | ACNGT | 4 cut(s) | 149, 228, 327, 388 |
| BstACI | GRCGYC | 1 cut(s) | 1029 |
| BstAFI | CTTAAG | 1 cut(s) | 338 |
| BstBAI | YACGTR | 2 cut(s) | 770, 788 |
| BstC8I | GCNNGC | 3 cut(s) | 410, 862, 940 |
| BstDEI | CTNAG | 3 cut(s) | 263, 693, 1074 |
| BstF5I | GGATG | 1 cut(s) | 337 |
| BstHHI | GCGC | 1 cut(s) | 456 |
| BstKTI | GATC | 5 cut(s) | 25, 280, 510, 612, 760 |
| BstMBI | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 825, 939 |
| BstNI | CCWGG | 1 cut(s) | 667 |
| BstSCI | CCNGG | 1 cut(s) | 665 |
| BstV1I | GCAGC | 1 cut(s) | 965 |
| BstV2I | GAAGAC | 2 cut(s) | 317, 521 |
| Bsu36I | CCTNAGG | 1 cut(s) | 693 |
| BsuRI | GGCC | 6 cut(s) | 127, 670, 819, 828, 864, 1017 |
| BtrI | CACGTC | 2 cut(s) | 467, 752 |
| BtsCI | GGATG | 1 cut(s) | 337 |
| BtsI | GCAGTG | 1 cut(s) | 192 |
| BtsIMutI | CAGTG | 3 cut(s) | 192, 289, 398 |
| Cac8I | GCNNGC | 3 cut(s) | 410, 862, 940 |
| CciI | TCATGA | 1 cut(s) | 361 |
| CfoI | GCGC | 1 cut(s) | 456 |
| Cfr13I | GGNCC | 4 cut(s) | 224, 817, 827, 863 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviAII | CATG | 4 cut(s) | 362, 800, 875, 1019 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DdeI | CTNAG | 3 cut(s) | 263, 693, 1074 |
| DpnI | GATC | 5 cut(s) | 24, 279, 509, 611, 759 |
| DpnII | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| DraIII | CACNNNGTG | 1 cut(s) | 788 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 804, 1028 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 804, 1028 |
| EaeI | YGGCCR | 1 cut(s) | 125 |
| Eco130I | CCWWGG | 1 cut(s) | 899 |
| Eco147I | AGGCCT | 1 cut(s) | 670 |
| Eco47I | GGWCC | 1 cut(s) | 224 |
| Eco57I | CTGAAG | 3 cut(s) | 287, 522, 894 |
| Eco72I | CACGTG | 2 cut(s) | 770, 788 |
| Eco81I | CCTNAGG | 1 cut(s) | 693 |
| EcoO109I | RGGNCCY | 1 cut(s) | 827 |
| EcoRII | CCWGG | 1 cut(s) | 665 |
| EcoT14I | CCWWGG | 1 cut(s) | 899 |
| ErhI | CCWWGG | 1 cut(s) | 899 |
| FaeI | CATG | 4 cut(s) | 365, 803, 878, 1022 |
| FaqI | GGGAC | 2 cut(s) | 357, 691 |
| FatI | CATG | 4 cut(s) | 361, 799, 874, 1018 |
| FbaI | TGATCA | 1 cut(s) | 609 |
| Fnu4HI | GCNGC | 2 cut(s) | 78, 954 |
| FokI | GGATG | 1 cut(s) | 344 |
| Fsp4HI | GCNGC | 2 cut(s) | 78, 954 |
| FspBI | CTAG | 4 cut(s) | 282, 551, 867, 900 |
| GlaI | GCGC | 1 cut(s) | 455 |
| GluI | GCNGC | 2 cut(s) | 78, 954 |
| GsuI | CTGGAG | 1 cut(s) | 590 |
| HaeIII | GGCC | 6 cut(s) | 127, 670, 819, 828, 864, 1017 |
| HhaI | GCGC | 1 cut(s) | 456 |
| Hin1I | GRCGYC | 1 cut(s) | 1029 |
| Hin1II | CATG | 4 cut(s) | 365, 803, 878, 1022 |
| Hin6I | GCGC | 1 cut(s) | 454 |
| HinP1I | GCGC | 1 cut(s) | 454 |
| HincII | GTYRAC | 1 cut(s) | 1033 |
| HindII | GTYRAC | 1 cut(s) | 1033 |
| HinfI | GANTC | 3 cut(s) | 4, 588, 977 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy166II | GTNNAC | 1 cut(s) | 1033 |
| Hpy188I | TCNGA | 4 cut(s) | 42, 160, 232, 264 |
| Hpy188III | TCNNGA | 6 cut(s) | 20, 26, 362, 511, 692, 809 |
| Hpy8I | GTNNAC | 1 cut(s) | 1033 |
| HpyAV | CCTTC | 4 cut(s) | 311, 607, 918, 1004 |
| HpyCH4III | ACNGT | 4 cut(s) | 149, 228, 327, 388 |
| HpyCH4IV | ACGT | 6 cut(s) | 346, 466, 751, 769, 787, 1029 |
| HpyCH4V | TGCA | 5 cut(s) | 622, 737, 846, 889, 1046 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 825, 939 |
| HpyF3I | CTNAG | 3 cut(s) | 263, 693, 1074 |
| HpySE526I | ACGT | 6 cut(s) | 346, 466, 751, 769, 787, 1029 |
| Hsp92I | GRCGYC | 1 cut(s) | 1029 |
| Hsp92II | CATG | 4 cut(s) | 365, 803, 878, 1022 |
| HspAI | GCGC | 1 cut(s) | 454 |
| Ksp22I | TGATCA | 1 cut(s) | 609 |
| Kzo9I | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| Lsp1109I | GCAGC | 1 cut(s) | 965 |
| LweI | GCATC | 1 cut(s) | 322 |
| MaeI | CTAG | 4 cut(s) | 282, 551, 867, 900 |
| MaeII | ACGT | 6 cut(s) | 346, 466, 751, 769, 787, 1029 |
| MalI | GATC | 5 cut(s) | 24, 279, 509, 611, 759 |
| MboI | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| MboII | GAAGA | 4 cut(s) | 322, 509, 526, 1019 |
| MfeI | CAATTG | 1 cut(s) | 1041 |
| MluCI | AATT | 7 cut(s) | 472, 543, 687, 700, 928, 958, 1041 |
| MlyI | GAGTC | 1 cut(s) | 986 |
| MmeI | TCCRAC | 1 cut(s) | 727 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MseI | TTAA | 3 cut(s) | 254, 339, 1053 |
| MspCI | CTTAAG | 1 cut(s) | 338 |
| MspR9I | CCNGG | 1 cut(s) | 667 |
| MunI | CAATTG | 1 cut(s) | 1041 |
| MvaI | CCWGG | 1 cut(s) | 667 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 825, 939 |
| NdeII | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| NlaIII | CATG | 4 cut(s) | 365, 803, 878, 1022 |
| NlaIV | GGNNCC | 2 cut(s) | 897, 905 |
| NmeAIII | GCCGAG | 1 cut(s) | 103 |
| PagI | TCATGA | 1 cut(s) | 361 |
| PceI | AGGCCT | 1 cut(s) | 670 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 2 cut(s) | 4, 588 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 840 |
| PkrI | GCNGC | 2 cut(s) | 79, 955 |
| PleI | GAGTC | 1 cut(s) | 985 |
| PmaCI | CACGTG | 2 cut(s) | 770, 788 |
| PmlI | CACGTG | 2 cut(s) | 770, 788 |
| PpsI | GAGTC | 1 cut(s) | 985 |
| Ppu21I | YACGTR | 2 cut(s) | 770, 788 |
| PsiI | TTATAA | 1 cut(s) | 420 |
| Psp6I | CCWGG | 1 cut(s) | 665 |
| PspCI | CACGTG | 2 cut(s) | 770, 788 |
| PspGI | CCWGG | 1 cut(s) | 665 |
| PspN4I | GGNNCC | 2 cut(s) | 897, 905 |
| PspPI | GGNCC | 4 cut(s) | 224, 817, 827, 863 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| SaqAI | TTAA | 3 cut(s) | 254, 339, 1053 |
| SatI | GCNGC | 2 cut(s) | 78, 954 |
| Sau3AI | GATC | 5 cut(s) | 22, 277, 507, 609, 757 |
| Sau96I | GGNCC | 4 cut(s) | 224, 817, 827, 863 |
| SchI | GAGTC | 1 cut(s) | 986 |
| ScrFI | CCNGG | 1 cut(s) | 667 |
| SfaNI | GCATC | 1 cut(s) | 322 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 825 |
| SinI | GGWCC | 1 cut(s) | 224 |
| SmlI | CTYRAG | 2 cut(s) | 137, 338 |
| SmoI | CTYRAG | 2 cut(s) | 137, 338 |
| Sse9I | AATT | 7 cut(s) | 472, 543, 687, 700, 928, 958, 1041 |
| SseBI | AGGCCT | 1 cut(s) | 670 |
| SsiI | CCGC | 5 cut(s) | 14, 60, 75, 78, 406 |
| SspMI | CTAG | 4 cut(s) | 282, 551, 867, 900 |
| StuI | AGGCCT | 1 cut(s) | 670 |
| StyD4I | CCNGG | 1 cut(s) | 665 |
| StyI | CCWWGG | 1 cut(s) | 899 |
| TaaI | ACNGT | 4 cut(s) | 149, 228, 327, 388 |
| TaiI | ACGT | 6 cut(s) | 349, 469, 754, 772, 790, 1032 |
| TaqI | TCGA | 2 cut(s) | 7, 19 |
| TasI | AATT | 7 cut(s) | 472, 543, 687, 700, 928, 958, 1041 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 2 cut(s) | 4, 588 |
| Tru1I | TTAA | 3 cut(s) | 254, 339, 1053 |
| Tru9I | TTAA | 3 cut(s) | 254, 339, 1053 |
| TscAI | CASTG | 3 cut(s) | 199, 296, 398 |
| TseI | GCWGC | 1 cut(s) | 953 |
| TspDTI | ATGAA | 3 cut(s) | 89, 350, 414 |
| TspGWI | ACGGA | 1 cut(s) | 147 |
| TspRI | CASTG | 3 cut(s) | 199, 296, 398 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 840 |
| Vha464I | CTTAAG | 1 cut(s) | 338 |
| VpaK11BI | GGWCC | 1 cut(s) | 224 |
| XapI | RAATTY | 2 cut(s) | 472, 687 |
| XmaJI | CCTAGG | 1 cut(s) | 899 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 4 cut(s) | 282, 551, 867, 900 |
| ZraI | GACGTC | 1 cut(s) | 1030 |