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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 648, 923 |
| AatII | GACGTC | 1 cut(s) | 927 |
| AccB1I | GGYRCC | 1 cut(s) | 739 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 684 |
| AciI | CCGC | 2 cut(s) | 58, 250 |
| AclWI | GGATC | 2 cut(s) | 346, 596 |
| AcsI | RAATTY | 4 cut(s) | 23, 316, 531, 962 |
| AcuI | CTGAAG | 2 cut(s) | 366, 738 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AcyI | GRCGYC | 1 cut(s) | 924 |
| AfaI | GTAC | 2 cut(s) | 56, 818 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 684 |
| AflII | CTTAAG | 1 cut(s) | 182 |
| AgsI | TTSAA | 5 cut(s) | 154, 236, 283, 445, 499 |
| AjiI | CACGTC | 1 cut(s) | 596 |
| AluBI | AGCT | 1 cut(s) | 451 |
| AluI | AGCT | 1 cut(s) | 451 |
| AlwI | GGATC | 2 cut(s) | 346, 596 |
| AoxI | GGCC | 5 cut(s) | 512, 661, 670, 706, 910 |
| ApeKI | GCWGC | 1 cut(s) | 848 |
| ApoI | RAATTY | 4 cut(s) | 23, 316, 531, 962 |
| AspLEI | GCGC | 2 cut(s) | 300, 690 |
| AspS9I | GGNCC | 4 cut(s) | 137, 661, 671, 707 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| AxyI | CCTNAGG | 1 cut(s) | 537 |
| BaeGI | GKGCMC | 1 cut(s) | 742 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 739 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| BbsI | GAAGAC | 2 cut(s) | 161, 365 |
| BbvI | GCAGC | 1 cut(s) | 860 |
| BccI | CCATC | 2 cut(s) | 406, 689 |
| BceAI | ACGGC | 2 cut(s) | 45, 648 |
| BclI | TGATCA | 1 cut(s) | 453 |
| BfaI | CTAG | 2 cut(s) | 395, 510 |
| BfrI | CTTAAG | 1 cut(s) | 182 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 669 |
| BisI | GCNGC | 1 cut(s) | 849 |
| BlsI | GCNGC | 1 cut(s) | 850 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmgBI | CACGTC | 1 cut(s) | 596 |
| BmgT120I | GGNCC | 4 cut(s) | 137, 661, 671, 707 |
| BmiI | GGNNCC | 1 cut(s) | 741 |
| BmsI | GCATC | 2 cut(s) | 166, 970 |
| BpiI | GAAGAC | 2 cut(s) | 161, 365 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| BsaHI | GRCGYC | 1 cut(s) | 924 |
| BsaJI | CCNNGG | 2 cut(s) | 664, 785 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 684 |
| Bse1I | ACTGG | 2 cut(s) | 88, 718 |
| Bse21I | CCTNAGG | 1 cut(s) | 537 |
| Bse3DI | GCAATG | 1 cut(s) | 784 |
| BseDI | CCNNGG | 2 cut(s) | 664, 785 |
| BseGI | GGATG | 2 cut(s) | 181, 417 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 684 |
| BseMI | GCAATG | 1 cut(s) | 784 |
| BseMII | CTCAG | 5 cut(s) | 54, 465, 528, 933, 983 |
| BseNI | ACTGG | 2 cut(s) | 88, 718 |
| BseSI | GKGCMC | 1 cut(s) | 742 |
| BseXI | GCAGC | 1 cut(s) | 860 |
| BshFI | GGCC | 5 cut(s) | 514, 663, 672, 708, 912 |
| BshNI | GGYRCC | 1 cut(s) | 739 |
| BslFI | GGGAC | 3 cut(s) | 201, 535, 654 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 684 |
| BsmFI | GGGAC | 3 cut(s) | 201, 535, 654 |
| BsnI | GGCC | 5 cut(s) | 514, 663, 672, 708, 912 |
| Bsp1286I | GDGCHC | 1 cut(s) | 742 |
| Bsp143I | GATC | 4 cut(s) | 7, 351, 453, 601 |
| Bsp19I | CCATGG | 1 cut(s) | 785 |
| BspACI | CCGC | 2 cut(s) | 58, 250 |
| BspANI | GGCC | 5 cut(s) | 514, 663, 672, 708, 912 |
| BspCNI | CTCAG | 5 cut(s) | 53, 466, 529, 932, 982 |
| BspHI | TCATGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 741 |
| BspPI | GGATC | 2 cut(s) | 346, 596 |
| BspT107I | GGYRCC | 1 cut(s) | 739 |
| BspTI | CTTAAG | 1 cut(s) | 182 |
| BsrDI | GCAATG | 1 cut(s) | 784 |
| BsrI | ACTGG | 2 cut(s) | 88, 718 |
| BssECI | CCNNGG | 2 cut(s) | 664, 785 |
| BssMI | GATC | 4 cut(s) | 7, 351, 453, 601 |
| BssNI | GRCGYC | 1 cut(s) | 924 |
| BssT1I | CCWWGG | 1 cut(s) | 785 |
| Bst4CI | ACNGT | 3 cut(s) | 141, 171, 232 |
| BstACI | GRCGYC | 1 cut(s) | 924 |
| BstAFI | CTTAAG | 1 cut(s) | 182 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstC8I | GCNNGC | 3 cut(s) | 254, 706, 835 |
| BstDEI | CTNAG | 6 cut(s) | 40, 474, 537, 744, 919, 969 |
| BstDSI | CCRYGG | 2 cut(s) | 664, 785 |
| BstF5I | GGATG | 2 cut(s) | 181, 417 |
| BstHHI | GCGC | 2 cut(s) | 300, 690 |
| BstKTI | GATC | 4 cut(s) | 10, 354, 456, 604 |
| BstMBI | GATC | 4 cut(s) | 7, 351, 453, 601 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 669, 834 |
| BstSLI | GKGCMC | 1 cut(s) | 742 |
| BstV1I | GCAGC | 1 cut(s) | 860 |
| BstV2I | GAAGAC | 2 cut(s) | 161, 365 |
| Bsu36I | CCTNAGG | 1 cut(s) | 537 |
| BsuRI | GGCC | 5 cut(s) | 514, 663, 672, 708, 912 |
| BtgI | CCRYGG | 2 cut(s) | 664, 785 |
| BtrI | CACGTC | 1 cut(s) | 596 |
| BtsCI | GGATG | 2 cut(s) | 181, 417 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 3 cut(s) | 254, 706, 835 |
| CciI | TCATGA | 1 cut(s) | 205 |
| CfoI | GCGC | 2 cut(s) | 300, 690 |
| Cfr13I | GGNCC | 4 cut(s) | 137, 661, 671, 707 |
| Csp6I | GTAC | 2 cut(s) | 55, 817 |
| CviAII | CATG | 5 cut(s) | 206, 644, 719, 786, 914 |
| CviQI | GTAC | 2 cut(s) | 55, 817 |
| DdeI | CTNAG | 6 cut(s) | 40, 474, 537, 744, 919, 969 |
| DpnI | GATC | 4 cut(s) | 9, 353, 455, 603 |
| DpnII | GATC | 4 cut(s) | 7, 351, 453, 601 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 648, 923 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 648, 923 |
| Eco130I | CCWWGG | 1 cut(s) | 785 |
| Eco147I | AGGCCT | 1 cut(s) | 514 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 738 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| Eco81I | CCTNAGG | 1 cut(s) | 537 |
| EcoO109I | RGGNCCY | 1 cut(s) | 671 |
| EcoT14I | CCWWGG | 1 cut(s) | 785 |
| ErhI | CCWWGG | 1 cut(s) | 785 |
| FaeI | CATG | 5 cut(s) | 209, 647, 722, 789, 917 |
| FaqI | GGGAC | 3 cut(s) | 201, 535, 654 |
| FatI | CATG | 5 cut(s) | 205, 643, 718, 785, 913 |
| FbaI | TGATCA | 1 cut(s) | 453 |
| Fnu4HI | GCNGC | 1 cut(s) | 849 |
| FokI | GGATG | 2 cut(s) | 188, 424 |
| Fsp4HI | GCNGC | 1 cut(s) | 849 |
| FspBI | CTAG | 2 cut(s) | 395, 510 |
| GlaI | GCGC | 2 cut(s) | 299, 689 |
| GluI | GCNGC | 1 cut(s) | 849 |
| HaeIII | GGCC | 5 cut(s) | 514, 663, 672, 708, 912 |
| HhaI | GCGC | 2 cut(s) | 300, 690 |
| Hin1I | GRCGYC | 1 cut(s) | 924 |
| Hin1II | CATG | 5 cut(s) | 209, 647, 722, 789, 917 |
| Hin6I | GCGC | 2 cut(s) | 298, 688 |
| HinP1I | GCGC | 2 cut(s) | 298, 688 |
| HincII | GTYRAC | 2 cut(s) | 928, 975 |
| HindII | GTYRAC | 2 cut(s) | 928, 975 |
| HinfI | GANTC | 6 cut(s) | 38, 361, 400, 801, 872, 917 |
| Hpy166II | GTNNAC | 2 cut(s) | 928, 975 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 145, 922 |
| Hpy188III | TCNNGA | 4 cut(s) | 206, 355, 536, 653 |
| Hpy8I | GTNNAC | 2 cut(s) | 928, 975 |
| HpyAV | CCTTC | 4 cut(s) | 451, 577, 762, 899 |
| HpyCH4III | ACNGT | 3 cut(s) | 141, 171, 232 |
| HpyCH4IV | ACGT | 4 cut(s) | 595, 613, 631, 924 |
| HpyCH4V | TGCA | 4 cut(s) | 466, 733, 941, 983 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 669, 834 |
| HpyF3I | CTNAG | 6 cut(s) | 40, 474, 537, 744, 919, 969 |
| HpySE526I | ACGT | 4 cut(s) | 595, 613, 631, 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 924 |
| Hsp92II | CATG | 5 cut(s) | 209, 647, 722, 789, 917 |
| HspAI | GCGC | 2 cut(s) | 298, 688 |
| Ksp22I | TGATCA | 1 cut(s) | 453 |
| Kzo9I | GATC | 4 cut(s) | 7, 351, 453, 601 |
| LmnI | GCTCC | 1 cut(s) | 222 |
| LpnPI | CCDG | 9 cut(s) | 33, 69, 234, 368, 528, 549, 690, 699, 853 |
| Lsp1109I | GCAGC | 1 cut(s) | 860 |
| LweI | GCATC | 2 cut(s) | 166, 970 |
| MaeI | CTAG | 2 cut(s) | 395, 510 |
| MaeII | ACGT | 4 cut(s) | 595, 613, 631, 924 |
| MalI | GATC | 4 cut(s) | 9, 353, 455, 603 |
| MboI | GATC | 4 cut(s) | 7, 351, 453, 601 |
| MboII | GAAGA | 3 cut(s) | 166, 370, 914 |
| MfeI | CAATTG | 1 cut(s) | 936 |
| MhlI | GDGCHC | 1 cut(s) | 742 |
| MluCI | AATT | 8 cut(s) | 23, 316, 387, 531, 544, 853, 936, 962 |
| MlyI | GAGTC | 5 cut(s) | 32, 355, 810, 881, 911 |
| MmeI | TCCRAC | 2 cut(s) | 571, 784 |
| MnlI | CCTC | 8 cut(s) | 471, 481, 532, 662, 684, 855, 902, 941 |
| MseI | TTAA | 3 cut(s) | 183, 302, 948 |
| MspCI | CTTAAG | 1 cut(s) | 182 |
| MunI | CAATTG | 1 cut(s) | 936 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 669, 834 |
| NcoI | CCATGG | 1 cut(s) | 785 |
| NdeII | GATC | 4 cut(s) | 7, 351, 453, 601 |
| NlaIII | CATG | 5 cut(s) | 209, 647, 722, 789, 917 |
| NlaIV | GGNNCC | 1 cut(s) | 741 |
| PagI | TCATGA | 1 cut(s) | 205 |
| PceI | AGGCCT | 1 cut(s) | 514 |
| PfeI | GAWTC | 1 cut(s) | 400 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 684 |
| PkrI | GCNGC | 1 cut(s) | 850 |
| PleI | GAGTC | 5 cut(s) | 32, 355, 809, 880, 911 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 5 cut(s) | 32, 355, 809, 880, 911 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspN4I | GGNNCC | 1 cut(s) | 741 |
| PspPI | GGNCC | 4 cut(s) | 137, 661, 671, 707 |
| RsaI | GTAC | 2 cut(s) | 56, 818 |
| RsaNI | GTAC | 2 cut(s) | 55, 817 |
| SaqAI | TTAA | 3 cut(s) | 183, 302, 948 |
| SatI | GCNGC | 1 cut(s) | 849 |
| Sau3AI | GATC | 4 cut(s) | 7, 351, 453, 601 |
| Sau96I | GGNCC | 4 cut(s) | 137, 661, 671, 707 |
| SchI | GAGTC | 5 cut(s) | 32, 355, 810, 881, 911 |
| SduI | GDGCHC | 1 cut(s) | 742 |
| SfaNI | GCATC | 2 cut(s) | 166, 970 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 669 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SmlI | CTYRAG | 2 cut(s) | 50, 182 |
| SmoI | CTYRAG | 2 cut(s) | 50, 182 |
| Sse9I | AATT | 8 cut(s) | 23, 316, 387, 531, 544, 853, 936, 962 |
| SseBI | AGGCCT | 1 cut(s) | 514 |
| SsiI | CCGC | 2 cut(s) | 58, 250 |
| SspMI | CTAG | 2 cut(s) | 395, 510 |
| StuI | AGGCCT | 1 cut(s) | 514 |
| StyI | CCWWGG | 1 cut(s) | 785 |
| TaaI | ACNGT | 3 cut(s) | 141, 171, 232 |
| TaiI | ACGT | 4 cut(s) | 598, 616, 634, 927 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 8 cut(s) | 23, 316, 387, 531, 544, 853, 936, 962 |
| TfiI | GAWTC | 1 cut(s) | 400 |
| Tru1I | TTAA | 3 cut(s) | 183, 302, 948 |
| Tru9I | TTAA | 3 cut(s) | 183, 302, 948 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseI | GCWGC | 1 cut(s) | 848 |
| TspDTI | ATGAA | 3 cut(s) | 194, 258, 795 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 684 |
| Vha464I | CTTAAG | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 4 cut(s) | 23, 316, 531, 962 |
| XspI | CTAG | 2 cut(s) | 395, 510 |
| ZraI | GACGTC | 1 cut(s) | 925 |