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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 492, 692 |
| AatII | GACGTC | 1 cut(s) | 696 |
| AccB1I | GGYRCC | 1 cut(s) | 583 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 528, 745 |
| AccII | CGCG | 4 cut(s) | 14, 39, 82, 84 |
| AciI | CCGC | 3 cut(s) | 12, 14, 139 |
| AclWI | GGATC | 1 cut(s) | 338 |
| AcsI | RAATTY | 2 cut(s) | 167, 381 |
| AcuI | CTGAAG | 1 cut(s) | 582 |
| AcvI | CACGTG | 2 cut(s) | 458, 476 |
| AcyI | GRCGYC | 1 cut(s) | 693 |
| AdeI | CACNNNGTG | 1 cut(s) | 476 |
| AfaI | GTAC | 2 cut(s) | 137, 200 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 208, 358, 528, 745 |
| AgsI | TTSAA | 2 cut(s) | 217, 718 |
| AjiI | CACGTC | 2 cut(s) | 440, 488 |
| Alw26I | GTCTC | 1 cut(s) | 77 |
| AlwI | GGATC | 1 cut(s) | 338 |
| AoxI | GGCC | 5 cut(s) | 362, 505, 514, 550, 679 |
| ApoI | RAATTY | 2 cut(s) | 167, 381 |
| AspLEI | GCGC | 3 cut(s) | 19, 82, 84 |
| AspS9I | GGNCC | 4 cut(s) | 362, 505, 515, 551 |
| AsuHPI | GGTGA | 1 cut(s) | 425 |
| BaeGI | GKGCMC | 1 cut(s) | 586 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 182, 215 |
| BanI | GGYRCC | 1 cut(s) | 583 |
| BanII | GRGCYC | 1 cut(s) | 133 |
| BbrPI | CACGTG | 2 cut(s) | 458, 476 |
| BccI | CCATC | 3 cut(s) | 266, 281, 533 |
| BceAI | ACGGC | 1 cut(s) | 492 |
| BcoDI | GTCTC | 1 cut(s) | 77 |
| BfaI | CTAG | 2 cut(s) | 348, 555 |
| BfoI | RGCGCY | 1 cut(s) | 20 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 513 |
| BisI | GCNGC | 1 cut(s) | 15 |
| BlsI | GCNGC | 1 cut(s) | 16 |
| BmgBI | CACGTC | 2 cut(s) | 440, 488 |
| BmgT120I | GGNCC | 4 cut(s) | 362, 505, 515, 551 |
| BmiI | GGNNCC | 3 cut(s) | 132, 363, 585 |
| BmrI | ACTGGG | 1 cut(s) | 733 |
| BmsI | GCATC | 1 cut(s) | 41 |
| BmuI | ACTGGG | 1 cut(s) | 733 |
| BpmI | CTGGAG | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 2 cut(s) | 215, 371 |
| BsaAI | YACGTR | 2 cut(s) | 458, 476 |
| BsaHI | GRCGYC | 1 cut(s) | 693 |
| BsaJI | CCNNGG | 3 cut(s) | 12, 508, 791 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 208, 358, 528, 745 |
| Bse1I | ACTGG | 1 cut(s) | 739 |
| BseDI | CCNNGG | 3 cut(s) | 12, 508, 791 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 208, 358, 528, 745 |
| BseMII | CTCAG | 2 cut(s) | 198, 320 |
| BseNI | ACTGG | 1 cut(s) | 739 |
| BsePI | GCGCGC | 1 cut(s) | 80 |
| BseSI | GKGCMC | 1 cut(s) | 586 |
| BsgI | GTGCAG | 1 cut(s) | 553 |
| Bsh1236I | CGCG | 4 cut(s) | 14, 39, 82, 84 |
| BshFI | GGCC | 5 cut(s) | 364, 507, 516, 552, 681 |
| BshNI | GGYRCC | 1 cut(s) | 583 |
| BslFI | GGGAC | 5 cut(s) | 79, 132, 385, 450, 498 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 208, 358, 528, 745 |
| BsmAI | GTCTC | 1 cut(s) | 77 |
| BsmBI | CGTCTC | 1 cut(s) | 77 |
| BsmFI | GGGAC | 5 cut(s) | 79, 132, 385, 450, 498 |
| BsnI | GGCC | 5 cut(s) | 364, 507, 516, 552, 681 |
| Bsp1286I | GDGCHC | 2 cut(s) | 133, 586 |
| Bsp143I | GATC | 3 cut(s) | 161, 343, 766 |
| Bsp68I | TCGCGA | 1 cut(s) | 39 |
| BspACI | CCGC | 3 cut(s) | 12, 14, 139 |
| BspANI | GGCC | 5 cut(s) | 364, 507, 516, 552, 681 |
| BspCNI | CTCAG | 2 cut(s) | 197, 321 |
| BspFNI | CGCG | 4 cut(s) | 14, 39, 82, 84 |
| BspLI | GGNNCC | 3 cut(s) | 132, 363, 585 |
| BspPI | GGATC | 1 cut(s) | 338 |
| BspT107I | GGYRCC | 1 cut(s) | 583 |
| BsrI | ACTGG | 1 cut(s) | 739 |
| BssECI | CCNNGG | 3 cut(s) | 12, 508, 791 |
| BssHII | GCGCGC | 1 cut(s) | 80 |
| BssMI | GATC | 3 cut(s) | 161, 343, 766 |
| BssNI | GRCGYC | 1 cut(s) | 693 |
| BssT1I | CCWWGG | 1 cut(s) | 791 |
| Bst4CI | ACNGT | 3 cut(s) | 206, 294, 799 |
| BstACI | GRCGYC | 1 cut(s) | 693 |
| BstBAI | YACGTR | 2 cut(s) | 458, 476 |
| BstC8I | GCNNGC | 2 cut(s) | 41, 82 |
| BstDEI | CTNAG | 3 cut(s) | 184, 329, 588 |
| BstDSI | CCRYGG | 2 cut(s) | 12, 508 |
| BstFNI | CGCG | 4 cut(s) | 14, 39, 82, 84 |
| BstH2I | RGCGCY | 1 cut(s) | 20 |
| BstHHI | GCGC | 3 cut(s) | 19, 82, 84 |
| BstKTI | GATC | 3 cut(s) | 164, 346, 769 |
| BstMAI | GTCTC | 1 cut(s) | 77 |
| BstMBI | GATC | 3 cut(s) | 161, 343, 766 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 513 |
| BstSLI | GKGCMC | 1 cut(s) | 586 |
| BstUI | CGCG | 4 cut(s) | 14, 39, 82, 84 |
| BsuRI | GGCC | 5 cut(s) | 364, 507, 516, 552, 681 |
| BtgI | CCRYGG | 2 cut(s) | 12, 508 |
| BtrI | CACGTC | 2 cut(s) | 440, 488 |
| BtsI | GCAGTG | 1 cut(s) | 249 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| BtuMI | TCGCGA | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 2 cut(s) | 41, 82 |
| CfoI | GCGC | 3 cut(s) | 19, 82, 84 |
| Cfr13I | GGNCC | 4 cut(s) | 362, 505, 515, 551 |
| Cfr42I | CCGCGG | 1 cut(s) | 15 |
| Csp6I | GTAC | 2 cut(s) | 136, 199 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 469, 504 |
| CviAII | CATG | 3 cut(s) | 22, 563, 683 |
| CviJI | RGCY | 9 cut(s) | 131, 351, 364, 392, 507, 516, 552, 662, 681 |
| CviKI_1 | RGCY | 9 cut(s) | 131, 351, 364, 392, 507, 516, 552, 662, 681 |
| CviQI | GTAC | 2 cut(s) | 136, 199 |
| DdeI | CTNAG | 3 cut(s) | 184, 329, 588 |
| DpnI | GATC | 3 cut(s) | 163, 345, 768 |
| DpnII | GATC | 3 cut(s) | 161, 343, 766 |
| DraIII | CACNNNGTG | 1 cut(s) | 476 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 492, 692 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 492, 692 |
| Eco130I | CCWWGG | 1 cut(s) | 791 |
| Eco24I | GRGCYC | 1 cut(s) | 133 |
| Eco57I | CTGAAG | 1 cut(s) | 582 |
| Eco72I | CACGTG | 2 cut(s) | 458, 476 |
| EcoO109I | RGGNCCY | 2 cut(s) | 362, 515 |
| EcoT14I | CCWWGG | 1 cut(s) | 791 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 133 |
| ErhI | CCWWGG | 1 cut(s) | 791 |
| Esp3I | CGTCTC | 1 cut(s) | 77 |
| FaeI | CATG | 3 cut(s) | 25, 566, 686 |
| FaqI | GGGAC | 5 cut(s) | 79, 132, 385, 450, 498 |
| FatI | CATG | 3 cut(s) | 21, 562, 682 |
| Fnu4HI | GCNGC | 1 cut(s) | 15 |
| FriOI | GRGCYC | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 1 cut(s) | 15 |
| FspBI | CTAG | 2 cut(s) | 348, 555 |
| GlaI | GCGC | 3 cut(s) | 18, 81, 83 |
| GluI | GCNGC | 1 cut(s) | 15 |
| GsuI | CTGGAG | 1 cut(s) | 738 |
| HaeII | RGCGCY | 1 cut(s) | 20 |
| HaeIII | GGCC | 5 cut(s) | 364, 507, 516, 552, 681 |
| HhaI | GCGC | 3 cut(s) | 19, 82, 84 |
| Hin1I | GRCGYC | 1 cut(s) | 693 |
| Hin1II | CATG | 3 cut(s) | 25, 566, 686 |
| Hin6I | GCGC | 3 cut(s) | 17, 80, 82 |
| HinP1I | GCGC | 3 cut(s) | 17, 80, 82 |
| HincII | GTYRAC | 1 cut(s) | 697 |
| HindII | GTYRAC | 1 cut(s) | 697 |
| HinfI | GANTC | 3 cut(s) | 92, 182, 644 |
| HphI | GGTGA | 1 cut(s) | 425 |
| Hpy166II | GTNNAC | 2 cut(s) | 88, 697 |
| Hpy188I | TCNGA | 4 cut(s) | 166, 187, 298, 330 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 497, 755 |
| Hpy8I | GTNNAC | 2 cut(s) | 88, 697 |
| HpyAV | CCTTC | 5 cut(s) | 107, 182, 606, 671, 799 |
| HpyCH4III | ACNGT | 3 cut(s) | 206, 294, 799 |
| HpyCH4IV | ACGT | 5 cut(s) | 439, 457, 475, 487, 693 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 25, 32, 431, 470, 534, 577, 710 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 513 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 329, 588 |
| HpySE526I | ACGT | 5 cut(s) | 439, 457, 475, 487, 693 |
| Hsp92I | GRCGYC | 1 cut(s) | 693 |
| Hsp92II | CATG | 3 cut(s) | 25, 566, 686 |
| HspAI | GCGC | 3 cut(s) | 17, 80, 82 |
| KspI | CCGCGG | 1 cut(s) | 15 |
| Kzo9I | GATC | 3 cut(s) | 161, 343, 766 |
| LmnI | GCTCC | 2 cut(s) | 136, 757 |
| LpnPI | CCDG | 6 cut(s) | 343, 378, 593, 702, 752, 768 |
| LweI | GCATC | 1 cut(s) | 41 |
| MaeI | CTAG | 2 cut(s) | 348, 555 |
| MaeII | ACGT | 5 cut(s) | 439, 457, 475, 487, 693 |
| MalI | GATC | 3 cut(s) | 163, 345, 768 |
| MboI | GATC | 3 cut(s) | 161, 343, 766 |
| MboII | GAAGA | 1 cut(s) | 686 |
| MfeI | CAATTG | 1 cut(s) | 705 |
| MhlI | GDGCHC | 2 cut(s) | 133, 586 |
| MluCI | AATT | 4 cut(s) | 167, 381, 394, 705 |
| MlyI | GAGTC | 3 cut(s) | 101, 176, 653 |
| MmeI | TCCRAC | 1 cut(s) | 179 |
| MnlI | CCTC | 7 cut(s) | 19, 74, 324, 506, 528, 652, 710 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 1 cut(s) | 320 |
| MspA1I | CMGCKG | 1 cut(s) | 14 |
| MunI | CAATTG | 1 cut(s) | 705 |
| MvnI | CGCG | 4 cut(s) | 14, 39, 82, 84 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 513 |
| NdeII | GATC | 3 cut(s) | 161, 343, 766 |
| NlaIII | CATG | 3 cut(s) | 25, 566, 686 |
| NlaIV | GGNNCC | 3 cut(s) | 132, 363, 585 |
| NruI | TCGCGA | 1 cut(s) | 39 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PauI | GCGCGC | 1 cut(s) | 80 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 493 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 528, 745 |
| PkrI | GCNGC | 1 cut(s) | 16 |
| PleI | GAGTC | 3 cut(s) | 100, 176, 652 |
| PmaCI | CACGTG | 2 cut(s) | 458, 476 |
| PmlI | CACGTG | 2 cut(s) | 458, 476 |
| PpsI | GAGTC | 3 cut(s) | 100, 176, 652 |
| Ppu21I | YACGTR | 2 cut(s) | 458, 476 |
| PspCI | CACGTG | 2 cut(s) | 458, 476 |
| PspN4I | GGNNCC | 3 cut(s) | 132, 363, 585 |
| PspPI | GGNCC | 4 cut(s) | 362, 505, 515, 551 |
| PteI | GCGCGC | 1 cut(s) | 80 |
| RruI | TCGCGA | 1 cut(s) | 39 |
| RsaI | GTAC | 2 cut(s) | 137, 200 |
| RsaNI | GTAC | 2 cut(s) | 136, 199 |
| SacII | CCGCGG | 1 cut(s) | 15 |
| SaqAI | TTAA | 1 cut(s) | 320 |
| SatI | GCNGC | 1 cut(s) | 15 |
| Sau3AI | GATC | 3 cut(s) | 161, 343, 766 |
| Sau96I | GGNCC | 4 cut(s) | 362, 505, 515, 551 |
| SchI | GAGTC | 3 cut(s) | 101, 176, 653 |
| SduI | GDGCHC | 2 cut(s) | 133, 586 |
| SfaNI | GCATC | 1 cut(s) | 41 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 513 |
| Sfr303I | CCGCGG | 1 cut(s) | 15 |
| SgrBI | CCGCGG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 2 cut(s) | 194, 386 |
| SmoI | CTYRAG | 2 cut(s) | 194, 386 |
| Sse9I | AATT | 4 cut(s) | 167, 381, 394, 705 |
| SsiI | CCGC | 3 cut(s) | 12, 14, 139 |
| SspMI | CTAG | 2 cut(s) | 348, 555 |
| StyI | CCWWGG | 1 cut(s) | 791 |
| TaaI | ACNGT | 3 cut(s) | 206, 294, 799 |
| TaiI | ACGT | 5 cut(s) | 442, 460, 478, 490, 696 |
| TaqI | TCGA | 2 cut(s) | 60, 160 |
| TasI | AATT | 4 cut(s) | 167, 381, 394, 705 |
| TauI | GCSGC | 1 cut(s) | 17 |
| Tru1I | TTAA | 1 cut(s) | 320 |
| Tru9I | TTAA | 1 cut(s) | 320 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TspDTI | ATGAA | 1 cut(s) | 639 |
| TspGWI | ACGGA | 2 cut(s) | 123, 123 |
| TspRI | CASTG | 1 cut(s) | 256 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 528, 745 |
| XapI | RAATTY | 2 cut(s) | 167, 381 |
| XspI | CTAG | 2 cut(s) | 348, 555 |
| ZraI | GACGTC | 1 cut(s) | 694 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |