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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 556 |
| AciI | CCGC | 2 cut(s) | 328, 556 |
| AclWI | GGATC | 3 cut(s) | 2, 194, 424 |
| AcsI | RAATTY | 1 cut(s) | 394 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AgsI | TTSAA | 3 cut(s) | 232, 361, 523 |
| AluBI | AGCT | 1 cut(s) | 529 |
| AluI | AGCT | 1 cut(s) | 529 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 3 cut(s) | 2, 194, 424 |
| ApoI | RAATTY | 1 cut(s) | 394 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbsI | GAAGAC | 2 cut(s) | 239, 443 |
| BccI | CCATC | 2 cut(s) | 122, 137 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 2 cut(s) | 204, 473 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BisI | GCNGC | 1 cut(s) | 557 |
| BlpI | GCTNAGC | 1 cut(s) | 552 |
| BlsI | GCNGC | 1 cut(s) | 558 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpiI | GAAGAC | 2 cut(s) | 239, 443 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| Bse1I | ACTGG | 1 cut(s) | 481 |
| BseGI | GGATG | 1 cut(s) | 259 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BseMII | CTCAG | 3 cut(s) | 12, 54, 543 |
| BseNI | ACTGG | 1 cut(s) | 481 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BslFI | GGGAC | 1 cut(s) | 279 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 1 cut(s) | 279 |
| Bsp143I | GATC | 4 cut(s) | 7, 199, 429, 531 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 552 |
| BspACI | CCGC | 2 cut(s) | 328, 556 |
| BspCNI | CTCAG | 3 cut(s) | 13, 53, 544 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 2, 194, 424 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrBI | CCGCTC | 1 cut(s) | 556 |
| BsrI | ACTGG | 1 cut(s) | 481 |
| BssMI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 85, 150, 249, 310 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 3 cut(s) | 21, 40, 552 |
| BstF5I | GGATG | 1 cut(s) | 259 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 4 cut(s) | 10, 202, 432, 534 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstV2I | GAAGAC | 2 cut(s) | 239, 443 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 143 |
| BtsCI | GGATG | 1 cut(s) | 259 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 320 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 2 cut(s) | 284, 370 |
| CviJI | RGCY | 3 cut(s) | 207, 529, 551 |
| CviKI_1 | RGCY | 3 cut(s) | 207, 529, 551 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 3 cut(s) | 21, 40, 552 |
| DpnI | GATC | 4 cut(s) | 9, 201, 431, 533 |
| DpnII | GATC | 4 cut(s) | 7, 199, 429, 531 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| FaeI | CATG | 2 cut(s) | 287, 373 |
| FaiI | YATR | 9 cut(s) | 195, 285, 371, 428, 470, 486, 488, 498, 561 |
| FaqI | GGGAC | 1 cut(s) | 279 |
| FatI | CATG | 2 cut(s) | 283, 369 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 1 cut(s) | 557 |
| FokI | GGATG | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 1 cut(s) | 557 |
| FspBI | CTAG | 2 cut(s) | 204, 473 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GluI | GCNGC | 1 cut(s) | 557 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin1II | CATG | 2 cut(s) | 287, 373 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HinfI | GANTC | 3 cut(s) | 38, 439, 510 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 154 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 284, 433 |
| HpyAV | CCTTC | 3 cut(s) | 233, 399, 529 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 85, 150, 249, 310 |
| HpyCH4IV | ACGT | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 40, 552 |
| HpySE526I | ACGT | 1 cut(s) | 268 |
| Hsp92II | CATG | 2 cut(s) | 287, 373 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 4 cut(s) | 7, 199, 429, 531 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| LpnPI | CCDG | 7 cut(s) | 20, 33, 199, 312, 446, 476, 494 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 204, 473 |
| MaeII | ACGT | 1 cut(s) | 268 |
| MalI | GATC | 4 cut(s) | 9, 201, 431, 533 |
| MbiI | CCGCTC | 1 cut(s) | 556 |
| MboI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| MboII | GAAGA | 3 cut(s) | 244, 431, 448 |
| MluCI | AATT | 1 cut(s) | 394 |
| MlyI | GAGTC | 2 cut(s) | 32, 433 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 2 cut(s) | 180, 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 2 cut(s) | 176, 261 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| NdeII | GATC | 4 cut(s) | 7, 199, 429, 531 |
| NlaIII | CATG | 2 cut(s) | 287, 373 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 510 |
| PkrI | GCNGC | 1 cut(s) | 558 |
| PleI | GAGTC | 2 cut(s) | 32, 433 |
| PpsI | GAGTC | 2 cut(s) | 32, 433 |
| PscI | ACATGT | 1 cut(s) | 369 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 2 cut(s) | 176, 261 |
| SatI | GCNGC | 1 cut(s) | 557 |
| Sau3AI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| SchI | GAGTC | 2 cut(s) | 32, 433 |
| SetI | ASST | 9 cut(s) | 22, 162, 176, 225, 271, 293, 521, 531, 540 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 2 cut(s) | 50, 260 |
| SmoI | CTYRAG | 2 cut(s) | 50, 260 |
| Sse9I | AATT | 1 cut(s) | 394 |
| SsiI | CCGC | 2 cut(s) | 328, 556 |
| SspMI | CTAG | 2 cut(s) | 204, 473 |
| TaaI | ACNGT | 5 cut(s) | 62, 85, 150, 249, 310 |
| TaiI | ACGT | 1 cut(s) | 271 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 1 cut(s) | 394 |
| TauI | GCSGC | 1 cut(s) | 559 |
| TfiI | GAWTC | 1 cut(s) | 510 |
| Tru1I | TTAA | 2 cut(s) | 176, 261 |
| Tru9I | TTAA | 2 cut(s) | 176, 261 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 320 |
| TspDTI | ATGAA | 3 cut(s) | 272, 336, 450 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 320 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 1 cut(s) | 394 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 2 cut(s) | 204, 473 |