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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1206 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 12, 795, 1242 |
| AccII | CGCG | 1 cut(s) | 292 |
| AciI | CCGC | 8 cut(s) | 48, 51, 61, 287, 290, 479, 670, 808 |
| AclWI | GGATC | 4 cut(s) | 276, 674, 904, 1154 |
| AcoI | YGGCCR | 5 cut(s) | 14, 93, 224, 382, 402 |
| AcsI | RAATTY | 3 cut(s) | 101, 874, 1089 |
| AcuI | CTGAAG | 4 cut(s) | 133, 689, 924, 1296 |
| AcvI | CACGTG | 2 cut(s) | 1172, 1190 |
| AcyI | GRCGYC | 1 cut(s) | 70 |
| AfaI | GTAC | 3 cut(s) | 155, 690, 701 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 12, 233, 308, 795, 1242 |
| AflIII | ACRYGT | 1 cut(s) | 849 |
| AgsI | TTSAA | 9 cut(s) | 197, 375, 533, 560, 712, 823, 841, 1003, 1057 |
| AjiI | CACGTC | 2 cut(s) | 869, 1154 |
| AluBI | AGCT | 5 cut(s) | 232, 248, 281, 390, 1009 |
| AluI | AGCT | 5 cut(s) | 232, 248, 281, 390, 1009 |
| AlwI | GGATC | 4 cut(s) | 276, 674, 904, 1154 |
| Ama87I | CYCGRG | 4 cut(s) | 212, 302, 430, 1094 |
| AoxI | GGCC | 7 cut(s) | 14, 93, 224, 382, 402, 1228, 1264 |
| ApeKI | GCWGC | 2 cut(s) | 107, 245 |
| ApoI | RAATTY | 3 cut(s) | 101, 874, 1089 |
| AspS9I | GGNCC | 3 cut(s) | 626, 1229, 1265 |
| AsuHPI | GGTGA | 1 cut(s) | 329 |
| AvaI | CYCGRG | 4 cut(s) | 212, 302, 430, 1094 |
| AvaII | GGWCC | 1 cut(s) | 626 |
| BanII | GRGCYC | 1 cut(s) | 266 |
| BbrPI | CACGTG | 2 cut(s) | 1172, 1190 |
| BbsI | GAAGAC | 3 cut(s) | 719, 829, 923 |
| BbvI | GCAGC | 2 cut(s) | 119, 257 |
| BccI | CCATC | 4 cut(s) | 374, 602, 617, 637 |
| BceAI | ACGGC | 2 cut(s) | 83, 130 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 234, 268 |
| BfaI | CTAG | 7 cut(s) | 200, 489, 500, 684, 953, 1068, 1269 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 572 |
| BglII | AGATCT | 1 cut(s) | 353 |
| BisI | GCNGC | 7 cut(s) | 48, 51, 108, 246, 290, 480, 671 |
| BlsI | GCNGC | 7 cut(s) | 49, 52, 109, 247, 291, 481, 672 |
| Bme18I | GGWCC | 1 cut(s) | 626 |
| BmeT110I | CYCGRG | 4 cut(s) | 212, 302, 430, 1094 |
| BmgBI | CACGTC | 2 cut(s) | 869, 1154 |
| BmgT120I | GGNCC | 3 cut(s) | 626, 1229, 1265 |
| BmrI | ACTGGG | 1 cut(s) | 703 |
| BmsI | GCATC | 4 cut(s) | 493, 724, 1307, 1378 |
| BmuI | ACTGGG | 1 cut(s) | 703 |
| BpiI | GAAGAC | 3 cut(s) | 719, 829, 923 |
| BpuEI | CTTGAG | 1 cut(s) | 169 |
| Bsa29I | ATCGAT | 1 cut(s) | 141 |
| BsaAI | YACGTR | 2 cut(s) | 1172, 1190 |
| BsaHI | GRCGYC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 1 cut(s) | 1095 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 12, 233, 308, 795, 1242 |
| Bse118I | RCCGGY | 1 cut(s) | 404 |
| Bse1I | ACTGG | 2 cut(s) | 698, 961 |
| BseCI | ATCGAT | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 1095 |
| BseGI | GGATG | 1 cut(s) | 739 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 12, 233, 308, 795, 1242 |
| BseMII | CTCAG | 1 cut(s) | 656 |
| BseNI | ACTGG | 2 cut(s) | 698, 961 |
| BseXI | GCAGC | 2 cut(s) | 119, 257 |
| Bsh1236I | CGCG | 1 cut(s) | 292 |
| BshFI | GGCC | 7 cut(s) | 16, 95, 226, 384, 404, 1230, 1266 |
| BshVI | ATCGAT | 1 cut(s) | 141 |
| BsiHKCI | CYCGRG | 4 cut(s) | 212, 302, 430, 1094 |
| BsiSI | CCGG | 6 cut(s) | 17, 30, 96, 227, 385, 405 |
| BslFI | GGGAC | 1 cut(s) | 1093 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 12, 233, 308, 795, 1242 |
| BsmFI | GGGAC | 1 cut(s) | 1093 |
| BsnI | GGCC | 7 cut(s) | 16, 95, 226, 384, 404, 1230, 1266 |
| BsoBI | CYCGRG | 4 cut(s) | 212, 302, 430, 1094 |
| Bsp1286I | GDGCHC | 1 cut(s) | 266 |
| Bsp143I | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| BspACI | CCGC | 8 cut(s) | 48, 51, 61, 287, 290, 479, 670, 808 |
| BspANI | GGCC | 7 cut(s) | 16, 95, 226, 384, 404, 1230, 1266 |
| BspCNI | CTCAG | 1 cut(s) | 657 |
| BspDI | ATCGAT | 1 cut(s) | 141 |
| BspFNI | CGCG | 1 cut(s) | 292 |
| BspPI | GGATC | 4 cut(s) | 276, 674, 904, 1154 |
| BsrFI | RCCGGY | 1 cut(s) | 404 |
| BsrI | ACTGG | 2 cut(s) | 698, 961 |
| BssAI | RCCGGY | 1 cut(s) | 404 |
| BssECI | CCNNGG | 1 cut(s) | 1095 |
| BssMI | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| BssNI | GRCGYC | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 3 cut(s) | 317, 495, 729 |
| Bst6I | CTCTTC | 1 cut(s) | 1315 |
| BstACI | GRCGYC | 1 cut(s) | 70 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 414 |
| BstBAI | YACGTR | 2 cut(s) | 1172, 1190 |
| BstC8I | GCNNGC | 4 cut(s) | 406, 547, 551, 1264 |
| BstDEI | CTNAG | 2 cut(s) | 665, 1302 |
| BstEII | GGTNACC | 1 cut(s) | 317 |
| BstF5I | GGATG | 1 cut(s) | 739 |
| BstFNI | CGCG | 1 cut(s) | 292 |
| BstKTI | GATC | 6 cut(s) | 145, 271, 356, 682, 912, 1162 |
| BstMBI | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 414, 485, 542, 572 |
| BstNSI | RCATGY | 2 cut(s) | 853, 1076 |
| BstPI | GGTNACC | 1 cut(s) | 317 |
| BstUI | CGCG | 1 cut(s) | 292 |
| BstV1I | GCAGC | 2 cut(s) | 119, 257 |
| BstV2I | GAAGAC | 3 cut(s) | 719, 829, 923 |
| BstX2I | RGATCY | 1 cut(s) | 353 |
| BstYI | RGATCY | 1 cut(s) | 353 |
| Bsu15I | ATCGAT | 1 cut(s) | 141 |
| BsuRI | GGCC | 7 cut(s) | 16, 95, 226, 384, 404, 1230, 1266 |
| BsuTUI | ATCGAT | 1 cut(s) | 141 |
| BtrI | CACGTC | 2 cut(s) | 869, 1154 |
| BtsCI | GGATG | 1 cut(s) | 739 |
| BtsI | GCAGTG | 1 cut(s) | 585 |
| BtsIMutI | CAGTG | 4 cut(s) | 585, 606, 691, 800 |
| Cac8I | GCNNGC | 4 cut(s) | 406, 547, 551, 1264 |
| Cfr10I | RCCGGY | 1 cut(s) | 404 |
| Cfr13I | GGNCC | 3 cut(s) | 626, 1229, 1265 |
| ClaI | ATCGAT | 1 cut(s) | 141 |
| CseI | GACGC | 1 cut(s) | 59 |
| Csp6I | GTAC | 3 cut(s) | 154, 689, 700 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1336, 1371 |
| CviAII | CATG | 5 cut(s) | 7, 850, 1073, 1202, 1344 |
| CviQI | GTAC | 3 cut(s) | 154, 689, 700 |
| DdeI | CTNAG | 2 cut(s) | 665, 1302 |
| DpnI | GATC | 6 cut(s) | 144, 270, 355, 681, 911, 1161 |
| DpnII | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1206 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1206 |
| EaeI | YGGCCR | 5 cut(s) | 14, 93, 224, 382, 402 |
| Eam1104I | CTCTTC | 1 cut(s) | 1315 |
| EarI | CTCTTC | 1 cut(s) | 1315 |
| Eco24I | GRGCYC | 1 cut(s) | 266 |
| Eco47I | GGWCC | 1 cut(s) | 626 |
| Eco57I | CTGAAG | 4 cut(s) | 133, 689, 924, 1296 |
| Eco72I | CACGTG | 2 cut(s) | 1172, 1190 |
| Eco88I | CYCGRG | 4 cut(s) | 212, 302, 430, 1094 |
| Eco91I | GGTNACC | 1 cut(s) | 317 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1229 |
| EcoO65I | GGTNACC | 1 cut(s) | 317 |
| EcoT38I | GRGCYC | 1 cut(s) | 266 |
| FaeI | CATG | 5 cut(s) | 10, 853, 1076, 1205, 1347 |
| FaqI | GGGAC | 1 cut(s) | 1093 |
| FatI | CATG | 5 cut(s) | 6, 849, 1072, 1201, 1343 |
| Fnu4HI | GCNGC | 7 cut(s) | 48, 51, 108, 246, 290, 480, 671 |
| FokI | GGATG | 1 cut(s) | 746 |
| FriOI | GRGCYC | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 7 cut(s) | 48, 51, 108, 246, 290, 480, 671 |
| FspBI | CTAG | 7 cut(s) | 200, 489, 500, 684, 953, 1068, 1269 |
| GluI | GCNGC | 7 cut(s) | 48, 51, 108, 246, 290, 480, 671 |
| HaeIII | GGCC | 7 cut(s) | 16, 95, 226, 384, 404, 1230, 1266 |
| HapII | CCGG | 6 cut(s) | 17, 30, 96, 227, 385, 405 |
| HgaI | GACGC | 1 cut(s) | 59 |
| Hin1I | GRCGYC | 1 cut(s) | 70 |
| Hin1II | CATG | 5 cut(s) | 10, 853, 1076, 1205, 1347 |
| HincII | GTYRAC | 1 cut(s) | 1333 |
| HindII | GTYRAC | 1 cut(s) | 1333 |
| HinfI | GANTC | 5 cut(s) | 331, 371, 919, 990, 1359 |
| HpaII | CCGG | 6 cut(s) | 17, 30, 96, 227, 385, 405 |
| HphI | GGTGA | 1 cut(s) | 329 |
| Hpy166II | GTNNAC | 2 cut(s) | 691, 1333 |
| Hpy188I | TCNGA | 4 cut(s) | 127, 268, 634, 666 |
| Hpy188III | TCNNGA | 4 cut(s) | 177, 500, 913, 1094 |
| Hpy8I | GTNNAC | 2 cut(s) | 691, 1333 |
| Hpy99I | CGWCG | 2 cut(s) | 75, 131 |
| HpyAV | CCTTC | 4 cut(s) | 171, 334, 713, 1009 |
| HpyCH4III | ACNGT | 3 cut(s) | 317, 495, 729 |
| HpyCH4IV | ACGT | 5 cut(s) | 748, 868, 1153, 1171, 1189 |
| HpyCH4V | TGCA | 5 cut(s) | 107, 1024, 1291, 1347, 1377 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 414, 485, 542, 572 |
| HpyF3I | CTNAG | 2 cut(s) | 665, 1302 |
| HpySE526I | ACGT | 5 cut(s) | 748, 868, 1153, 1171, 1189 |
| Hsp92I | GRCGYC | 1 cut(s) | 70 |
| Hsp92II | CATG | 5 cut(s) | 10, 853, 1076, 1205, 1347 |
| KroI | GCCGGC | 1 cut(s) | 404 |
| KroNI | GCCGGC | 1 cut(s) | 406 |
| Kzo9I | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| LmnI | GCTCC | 3 cut(s) | 229, 387, 780 |
| Lsp1109I | GCAGC | 2 cut(s) | 119, 257 |
| LweI | GCATC | 4 cut(s) | 493, 724, 1307, 1378 |
| MaeI | CTAG | 7 cut(s) | 200, 489, 500, 684, 953, 1068, 1269 |
| MaeII | ACGT | 5 cut(s) | 748, 868, 1153, 1171, 1189 |
| MaeIII | GTNAC | 2 cut(s) | 317, 852 |
| MalI | GATC | 6 cut(s) | 144, 270, 355, 681, 911, 1161 |
| MboI | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| MboII | GAAGA | 5 cut(s) | 724, 829, 911, 928, 1302 |
| MflI | RGATCY | 1 cut(s) | 353 |
| MhlI | GDGCHC | 1 cut(s) | 266 |
| MluCI | AATT | 6 cut(s) | 33, 101, 782, 874, 1089, 1102 |
| MlyI | GAGTC | 2 cut(s) | 325, 913 |
| MmeI | TCCRAC | 2 cut(s) | 150, 1129 |
| MroNI | GCCGGC | 1 cut(s) | 404 |
| MseI | TTAA | 3 cut(s) | 519, 656, 741 |
| MspA1I | CMGCKG | 1 cut(s) | 248 |
| MspI | CCGG | 6 cut(s) | 17, 30, 96, 227, 385, 405 |
| MvnI | CGCG | 1 cut(s) | 292 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 414, 485, 542, 572 |
| NaeI | GCCGGC | 1 cut(s) | 406 |
| NdeII | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| NgoMIV | GCCGGC | 1 cut(s) | 404 |
| NlaIII | CATG | 5 cut(s) | 10, 853, 1076, 1205, 1347 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspI | RCATGY | 2 cut(s) | 853, 1076 |
| PaeR7I | CTCGAG | 1 cut(s) | 212 |
| PciI | ACATGT | 1 cut(s) | 849 |
| PdiI | GCCGGC | 1 cut(s) | 406 |
| PfeI | GAWTC | 3 cut(s) | 371, 990, 1359 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 12, 795, 1242 |
| PkrI | GCNGC | 7 cut(s) | 49, 52, 109, 247, 291, 481, 672 |
| PleI | GAGTC | 2 cut(s) | 325, 913 |
| PmaCI | CACGTG | 2 cut(s) | 1172, 1190 |
| PmlI | CACGTG | 2 cut(s) | 1172, 1190 |
| PpsI | GAGTC | 2 cut(s) | 325, 913 |
| Ppu21I | YACGTR | 2 cut(s) | 1172, 1190 |
| PscI | ACATGT | 1 cut(s) | 849 |
| PspCI | CACGTG | 2 cut(s) | 1172, 1190 |
| PspEI | GGTNACC | 1 cut(s) | 317 |
| PspPI | GGNCC | 3 cut(s) | 626, 1229, 1265 |
| PspXI | VCTCGAGB | 1 cut(s) | 212 |
| PsuI | RGATCY | 1 cut(s) | 353 |
| PvuII | CAGCTG | 1 cut(s) | 248 |
| RsaI | GTAC | 3 cut(s) | 155, 690, 701 |
| RsaNI | GTAC | 3 cut(s) | 154, 689, 700 |
| SaqAI | TTAA | 3 cut(s) | 519, 656, 741 |
| SatI | GCNGC | 7 cut(s) | 48, 51, 108, 246, 290, 480, 671 |
| Sau3AI | GATC | 6 cut(s) | 142, 268, 353, 679, 909, 1159 |
| Sau96I | GGNCC | 3 cut(s) | 626, 1229, 1265 |
| SchI | GAGTC | 2 cut(s) | 325, 913 |
| SduI | GDGCHC | 1 cut(s) | 266 |
| SfaNI | GCATC | 4 cut(s) | 493, 724, 1307, 1378 |
| Sfr274I | CTCGAG | 1 cut(s) | 212 |
| SinI | GGWCC | 1 cut(s) | 626 |
| SlaI | CTCGAG | 1 cut(s) | 212 |
| SmlI | CTYRAG | 2 cut(s) | 184, 212 |
| SmoI | CTYRAG | 2 cut(s) | 184, 212 |
| Sse9I | AATT | 6 cut(s) | 33, 101, 782, 874, 1089, 1102 |
| SsiI | CCGC | 8 cut(s) | 48, 51, 61, 287, 290, 479, 670, 808 |
| SspI | AATATT | 1 cut(s) | 660 |
| SspMI | CTAG | 7 cut(s) | 200, 489, 500, 684, 953, 1068, 1269 |
| TaaI | ACNGT | 3 cut(s) | 317, 495, 729 |
| TaiI | ACGT | 5 cut(s) | 751, 871, 1156, 1174, 1192 |
| TaqI | TCGA | 5 cut(s) | 141, 213, 277, 329, 369 |
| TasI | AATT | 6 cut(s) | 33, 101, 782, 874, 1089, 1102 |
| TauI | GCSGC | 5 cut(s) | 50, 53, 292, 482, 673 |
| TfiI | GAWTC | 3 cut(s) | 371, 990, 1359 |
| Tru1I | TTAA | 3 cut(s) | 519, 656, 741 |
| Tru9I | TTAA | 3 cut(s) | 519, 656, 741 |
| TscAI | CASTG | 4 cut(s) | 592, 613, 698, 800 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 2 cut(s) | 107, 245 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 656, 816, 1197, 1353 |
| TspRI | CASTG | 4 cut(s) | 592, 613, 698, 800 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 12, 795, 1242 |
| VpaK11BI | GGWCC | 1 cut(s) | 626 |
| XapI | RAATTY | 3 cut(s) | 101, 874, 1089 |
| XbaI | TCTAGA | 1 cut(s) | 499 |
| XceI | RCATGY | 2 cut(s) | 853, 1076 |
| XhoI | CTCGAG | 1 cut(s) | 212 |
| XspI | CTAG | 7 cut(s) | 200, 489, 500, 684, 953, 1068, 1269 |