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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| AclWI | GGATC | 4 cut(s) | 2, 185, 316, 566 |
| AcsI | RAATTY | 3 cut(s) | 23, 286, 501 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AcvI | CACGTG | 1 cut(s) | 602 |
| AdeI | CACNNNGTG | 1 cut(s) | 602 |
| AfaI | GTAC | 2 cut(s) | 56, 212 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| AflIII | ACRYGT | 2 cut(s) | 261, 565 |
| AgsI | TTSAA | 5 cut(s) | 73, 223, 253, 415, 469 |
| AjiI | CACGTC | 3 cut(s) | 281, 566, 614 |
| AluBI | AGCT | 1 cut(s) | 421 |
| AluI | AGCT | 1 cut(s) | 421 |
| AlwI | GGATC | 4 cut(s) | 2, 185, 316, 566 |
| Ama87I | CYCGRG | 1 cut(s) | 506 |
| AoxI | GGCC | 3 cut(s) | 482, 631, 640 |
| ApoI | RAATTY | 3 cut(s) | 23, 286, 501 |
| AspLEI | GCGC | 1 cut(s) | 270 |
| AspS9I | GGNCC | 2 cut(s) | 631, 641 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AvaI | CYCGRG | 1 cut(s) | 506 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 1 cut(s) | 602 |
| BbsI | GAAGAC | 2 cut(s) | 230, 335 |
| BccI | CCATC | 3 cut(s) | 66, 148, 659 |
| BceAI | ACGGC | 1 cut(s) | 618 |
| BclI | TGATCA | 1 cut(s) | 423 |
| BfaI | CTAG | 2 cut(s) | 195, 365 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 639 |
| BmeT110I | CYCGRG | 1 cut(s) | 506 |
| BmgBI | CACGTC | 3 cut(s) | 281, 566, 614 |
| BmgT120I | GGNCC | 2 cut(s) | 631, 641 |
| BpiI | GAAGAC | 2 cut(s) | 230, 335 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 1 cut(s) | 634 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| Bse1I | ACTGG | 2 cut(s) | 243, 373 |
| BseDI | CCNNGG | 1 cut(s) | 634 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| BseMII | CTCAG | 1 cut(s) | 435 |
| BseNI | ACTGG | 2 cut(s) | 243, 373 |
| BshFI | GGCC | 3 cut(s) | 484, 633, 642 |
| BsiHKCI | CYCGRG | 1 cut(s) | 506 |
| BslFI | GGGAC | 1 cut(s) | 624 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| BsmFI | GGGAC | 1 cut(s) | 624 |
| BsnI | GGCC | 3 cut(s) | 484, 633, 642 |
| BsoBI | CYCGRG | 1 cut(s) | 506 |
| Bsp143I | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| BspANI | GGCC | 3 cut(s) | 484, 633, 642 |
| BspCNI | CTCAG | 1 cut(s) | 436 |
| BspPI | GGATC | 4 cut(s) | 2, 185, 316, 566 |
| BsrI | ACTGG | 2 cut(s) | 243, 373 |
| BssECI | CCNNGG | 1 cut(s) | 634 |
| BssMI | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| BstBAI | YACGTR | 1 cut(s) | 602 |
| BstDEI | CTNAG | 2 cut(s) | 40, 444 |
| BstDSI | CCRYGG | 1 cut(s) | 634 |
| BstHHI | GCGC | 1 cut(s) | 270 |
| BstKTI | GATC | 6 cut(s) | 10, 20, 193, 324, 426, 574 |
| BstMBI | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 639 |
| BstNSI | RCATGY | 1 cut(s) | 265 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 335 |
| BsuRI | GGCC | 3 cut(s) | 484, 633, 642 |
| BtgI | CCRYGG | 1 cut(s) | 634 |
| BtrI | CACGTC | 3 cut(s) | 281, 566, 614 |
| BtsIMutI | CAGTG | 1 cut(s) | 250 |
| CfoI | GCGC | 1 cut(s) | 270 |
| Cfr13I | GGNCC | 2 cut(s) | 631, 641 |
| Csp6I | GTAC | 2 cut(s) | 55, 211 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 595, 630 |
| CviAII | CATG | 2 cut(s) | 262, 582 |
| CviJI | RGCY | 7 cut(s) | 5, 198, 421, 443, 484, 633, 642 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 198, 421, 443, 484, 633, 642 |
| CviQI | GTAC | 2 cut(s) | 55, 211 |
| DdeI | CTNAG | 2 cut(s) | 40, 444 |
| DpnI | GATC | 6 cut(s) | 9, 19, 192, 323, 425, 573 |
| DpnII | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| DraIII | CACNNNGTG | 1 cut(s) | 602 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| Eco147I | AGGCCT | 1 cut(s) | 484 |
| Eco32I | GATATC | 1 cut(s) | 31 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| Eco72I | CACGTG | 1 cut(s) | 602 |
| Eco88I | CYCGRG | 1 cut(s) | 506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 641 |
| EcoRV | GATATC | 1 cut(s) | 31 |
| FaeI | CATG | 2 cut(s) | 265, 585 |
| FaqI | GGGAC | 1 cut(s) | 624 |
| FatI | CATG | 2 cut(s) | 261, 581 |
| FbaI | TGATCA | 1 cut(s) | 423 |
| FspBI | CTAG | 2 cut(s) | 195, 365 |
| GlaI | GCGC | 1 cut(s) | 269 |
| HaeIII | GGCC | 3 cut(s) | 484, 633, 642 |
| HhaI | GCGC | 1 cut(s) | 270 |
| Hin1II | CATG | 2 cut(s) | 265, 585 |
| Hin6I | GCGC | 1 cut(s) | 268 |
| HinP1I | GCGC | 1 cut(s) | 268 |
| HinfI | GANTC | 3 cut(s) | 331, 402, 509 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 2 cut(s) | 325, 506 |
| HpyAV | CCTTC | 2 cut(s) | 38, 421 |
| HpyCH4IV | ACGT | 4 cut(s) | 280, 565, 601, 613 |
| HpyCH4V | TGCA | 2 cut(s) | 551, 596 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 639 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 444 |
| HpySE526I | ACGT | 4 cut(s) | 280, 565, 601, 613 |
| Hsp92II | CATG | 2 cut(s) | 265, 585 |
| HspAI | GCGC | 1 cut(s) | 268 |
| Ksp22I | TGATCA | 1 cut(s) | 423 |
| Kzo9I | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| LpnPI | CCDG | 5 cut(s) | 224, 338, 386, 466, 498 |
| MaeI | CTAG | 2 cut(s) | 195, 365 |
| MaeII | ACGT | 4 cut(s) | 280, 565, 601, 613 |
| MaeIII | GTNAC | 1 cut(s) | 245 |
| MalI | GATC | 6 cut(s) | 9, 19, 192, 323, 425, 573 |
| MboI | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| MboII | GAAGA | 3 cut(s) | 235, 323, 340 |
| MluCI | AATT | 4 cut(s) | 23, 286, 501, 514 |
| MlyI | GAGTC | 2 cut(s) | 325, 518 |
| MmeI | TCCRAC | 3 cut(s) | 35, 363, 541 |
| MnlI | CCTC | 6 cut(s) | 171, 441, 451, 611, 632, 654 |
| MseI | TTAA | 1 cut(s) | 167 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 639 |
| NdeII | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| NlaIII | CATG | 2 cut(s) | 265, 585 |
| NmuCI | GTSAC | 1 cut(s) | 245 |
| NspI | RCATGY | 1 cut(s) | 265 |
| PceI | AGGCCT | 1 cut(s) | 484 |
| PciI | ACATGT | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 619 |
| PfeI | GAWTC | 1 cut(s) | 402 |
| PleI | GAGTC | 2 cut(s) | 325, 517 |
| PmaCI | CACGTG | 1 cut(s) | 602 |
| PmlI | CACGTG | 1 cut(s) | 602 |
| PpsI | GAGTC | 2 cut(s) | 325, 517 |
| Ppu21I | YACGTR | 1 cut(s) | 602 |
| PscI | ACATGT | 1 cut(s) | 261 |
| PspCI | CACGTG | 1 cut(s) | 602 |
| PspPI | GGNCC | 2 cut(s) | 631, 641 |
| RsaI | GTAC | 2 cut(s) | 56, 212 |
| RsaNI | GTAC | 2 cut(s) | 55, 211 |
| SaqAI | TTAA | 1 cut(s) | 167 |
| Sau3AI | GATC | 6 cut(s) | 7, 17, 190, 321, 423, 571 |
| Sau96I | GGNCC | 2 cut(s) | 631, 641 |
| SchI | GAGTC | 2 cut(s) | 325, 518 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 639 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 4 cut(s) | 23, 286, 501, 514 |
| SseBI | AGGCCT | 1 cut(s) | 484 |
| SspMI | CTAG | 2 cut(s) | 195, 365 |
| StuI | AGGCCT | 1 cut(s) | 484 |
| TaiI | ACGT | 4 cut(s) | 283, 568, 604, 616 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 23, 286, 501, 514 |
| TatI | WGTACW | 1 cut(s) | 210 |
| TfiI | GAWTC | 1 cut(s) | 402 |
| Tru1I | TTAA | 1 cut(s) | 167 |
| Tru9I | TTAA | 1 cut(s) | 167 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 245 |
| Tsp45I | GTSAC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 2 cut(s) | 150, 315 |
| TspRI | CASTG | 1 cut(s) | 250 |
| XapI | RAATTY | 3 cut(s) | 23, 286, 501 |
| XceI | RCATGY | 1 cut(s) | 265 |
| XspI | CTAG | 2 cut(s) | 195, 365 |