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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 212 |
| Acc16I | TGCGCA | 1 cut(s) | 39 |
| Acc36I | ACCTGC | 2 cut(s) | 43, 212 |
| AccII | CGCG | 1 cut(s) | 483 |
| AclWI | GGATC | 2 cut(s) | 290, 497 |
| AcoI | YGGCCR | 2 cut(s) | 703, 735 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AfaI | GTAC | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 436, 559, 712 |
| AgsI | TTSAA | 2 cut(s) | 367, 532 |
| AjiI | CACGTC | 1 cut(s) | 163 |
| AjnI | CCWGG | 1 cut(s) | 404 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 128, 160 |
| AluBI | AGCT | 1 cut(s) | 722 |
| AluI | AGCT | 1 cut(s) | 722 |
| Alw21I | GWGCWC | 2 cut(s) | 251, 552 |
| Alw26I | GTCTC | 1 cut(s) | 759 |
| AlwI | GGATC | 2 cut(s) | 290, 497 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| AoxI | GGCC | 6 cut(s) | 27, 99, 183, 683, 703, 735 |
| ApeKI | GCWGC | 5 cut(s) | 40, 57, 215, 264, 303 |
| AspLEI | GCGC | 2 cut(s) | 40, 215 |
| AspS9I | GGNCC | 3 cut(s) | 27, 408, 683 |
| AsuHPI | GGTGA | 7 cut(s) | 87, 96, 119, 124, 180, 185, 283 |
| AvaII | GGWCC | 1 cut(s) | 408 |
| BbsI | GAAGAC | 1 cut(s) | 498 |
| Bbv12I | GWGCWC | 2 cut(s) | 251, 552 |
| BbvI | GCAGC | 5 cut(s) | 44, 52, 202, 251, 315 |
| BccI | CCATC | 2 cut(s) | 264, 296 |
| BceAI | ACGGC | 1 cut(s) | 226 |
| BciT130I | CCWGG | 1 cut(s) | 406 |
| BcoDI | GTCTC | 1 cut(s) | 759 |
| BfaI | CTAG | 1 cut(s) | 275 |
| BfmI | CTRYAG | 2 cut(s) | 73, 301 |
| BfoI | RGCGCY | 1 cut(s) | 216 |
| BfuAI | ACCTGC | 2 cut(s) | 43, 212 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 743 |
| BisI | GCNGC | 5 cut(s) | 41, 58, 216, 265, 304 |
| BlsI | GCNGC | 5 cut(s) | 42, 59, 217, 266, 305 |
| Bme1390I | CCNGG | 1 cut(s) | 406 |
| Bme18I | GGWCC | 1 cut(s) | 408 |
| BmgBI | CACGTC | 1 cut(s) | 163 |
| BmgT120I | GGNCC | 3 cut(s) | 27, 408, 683 |
| BmiI | GGNNCC | 1 cut(s) | 684 |
| BmrFI | CCNGG | 1 cut(s) | 406 |
| BpiI | GAAGAC | 1 cut(s) | 498 |
| BpuEI | CTTGAG | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 2 cut(s) | 672, 686 |
| BsaWI | WCCGGW | 1 cut(s) | 165 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 436, 559, 712 |
| Bse118I | RCCGGY | 3 cut(s) | 97, 278, 737 |
| Bse1I | ACTGG | 2 cut(s) | 116, 186 |
| BseBI | CCWGG | 1 cut(s) | 406 |
| BseDI | CCNNGG | 2 cut(s) | 672, 686 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 436, 559, 712 |
| BseMII | CTCAG | 3 cut(s) | 507, 549, 687 |
| BseNI | ACTGG | 2 cut(s) | 116, 186 |
| BseRI | GAGGAG | 2 cut(s) | 142, 329 |
| BseXI | GCAGC | 5 cut(s) | 44, 52, 202, 251, 315 |
| BseYI | CCCAGC | 3 cut(s) | 15, 61, 227 |
| BsgI | GTGCAG | 2 cut(s) | 380, 669 |
| Bsh1236I | CGCG | 1 cut(s) | 483 |
| Bsh1285I | CGRYCG | 1 cut(s) | 55 |
| BshFI | GGCC | 6 cut(s) | 29, 101, 185, 685, 705, 737 |
| BsiEI | CGRYCG | 1 cut(s) | 55 |
| BsiHKAI | GWGCWC | 2 cut(s) | 251, 552 |
| BsiSI | CCGG | 4 cut(s) | 98, 166, 279, 738 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 436, 559, 712 |
| BsmAI | GTCTC | 1 cut(s) | 759 |
| BsnI | GGCC | 6 cut(s) | 29, 101, 185, 685, 705, 737 |
| Bsp1286I | GDGCHC | 2 cut(s) | 251, 552 |
| Bsp143I | GATC | 4 cut(s) | 52, 295, 383, 502 |
| Bsp19I | CCATGG | 1 cut(s) | 686 |
| BspANI | GGCC | 6 cut(s) | 29, 101, 185, 685, 705, 737 |
| BspCNI | CTCAG | 3 cut(s) | 508, 548, 688 |
| BspFNI | CGCG | 1 cut(s) | 483 |
| BspLI | GGNNCC | 1 cut(s) | 684 |
| BspMAI | CTGCAG | 2 cut(s) | 77, 305 |
| BspMI | ACCTGC | 2 cut(s) | 43, 212 |
| BspPI | GGATC | 2 cut(s) | 290, 497 |
| BsrFI | RCCGGY | 3 cut(s) | 97, 278, 737 |
| BsrI | ACTGG | 2 cut(s) | 116, 186 |
| BssAI | RCCGGY | 3 cut(s) | 97, 278, 737 |
| BssECI | CCNNGG | 2 cut(s) | 672, 686 |
| BssMI | GATC | 4 cut(s) | 52, 295, 383, 502 |
| BssT1I | CCWWGG | 2 cut(s) | 672, 686 |
| Bst2UI | CCWGG | 1 cut(s) | 406 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 81 |
| BstDEI | CTNAG | 3 cut(s) | 516, 535, 696 |
| BstDSI | CCRYGG | 1 cut(s) | 686 |
| BstFNI | CGCG | 1 cut(s) | 483 |
| BstH2I | RGCGCY | 1 cut(s) | 216 |
| BstHHI | GCGC | 2 cut(s) | 40, 215 |
| BstKTI | GATC | 4 cut(s) | 55, 298, 386, 505 |
| BstMAI | GTCTC | 1 cut(s) | 759 |
| BstMBI | GATC | 4 cut(s) | 52, 295, 383, 502 |
| BstMCI | CGRYCG | 1 cut(s) | 55 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 35, 81, 743, 780 |
| BstNI | CCWGG | 1 cut(s) | 406 |
| BstSCI | CCNGG | 1 cut(s) | 404 |
| BstSFI | CTRYAG | 2 cut(s) | 73, 301 |
| BstUI | CGCG | 1 cut(s) | 483 |
| BstV1I | GCAGC | 5 cut(s) | 44, 52, 202, 251, 315 |
| BstV2I | GAAGAC | 1 cut(s) | 498 |
| BsuRI | GGCC | 6 cut(s) | 29, 101, 185, 685, 705, 737 |
| BtgI | CCRYGG | 1 cut(s) | 686 |
| BtrI | CACGTC | 1 cut(s) | 163 |
| BtsI | GCAGTG | 1 cut(s) | 600 |
| BtsIMutI | CAGTG | 3 cut(s) | 109, 179, 600 |
| BveI | ACCTGC | 2 cut(s) | 43, 212 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| CfoI | GCGC | 2 cut(s) | 40, 215 |
| Cfr10I | RCCGGY | 3 cut(s) | 97, 278, 737 |
| Cfr13I | GGNCC | 3 cut(s) | 27, 408, 683 |
| Csp6I | GTAC | 1 cut(s) | 331 |
| CviAII | CATG | 2 cut(s) | 496, 687 |
| CviQI | GTAC | 1 cut(s) | 331 |
| DdeI | CTNAG | 3 cut(s) | 516, 535, 696 |
| DpnI | GATC | 4 cut(s) | 54, 297, 385, 504 |
| DpnII | GATC | 4 cut(s) | 52, 295, 383, 502 |
| EaeI | YGGCCR | 2 cut(s) | 703, 735 |
| Eco130I | CCWWGG | 2 cut(s) | 672, 686 |
| Eco47I | GGWCC | 1 cut(s) | 408 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| EcoRII | CCWGG | 1 cut(s) | 404 |
| EcoT14I | CCWWGG | 2 cut(s) | 672, 686 |
| ErhI | CCWWGG | 2 cut(s) | 672, 686 |
| FaeI | CATG | 2 cut(s) | 499, 690 |
| FaiI | YATR | 3 cut(s) | 497, 688, 732 |
| FatI | CATG | 2 cut(s) | 495, 686 |
| Fnu4HI | GCNGC | 5 cut(s) | 41, 58, 216, 265, 304 |
| Fsp4HI | GCNGC | 5 cut(s) | 41, 58, 216, 265, 304 |
| FspBI | CTAG | 1 cut(s) | 275 |
| FspI | TGCGCA | 1 cut(s) | 39 |
| GlaI | GCGC | 2 cut(s) | 39, 214 |
| GluI | GCNGC | 5 cut(s) | 41, 58, 216, 265, 304 |
| GsaI | CCCAGC | 3 cut(s) | 19, 65, 231 |
| HaeII | RGCGCY | 1 cut(s) | 216 |
| HaeIII | GGCC | 6 cut(s) | 29, 101, 185, 685, 705, 737 |
| HapII | CCGG | 4 cut(s) | 98, 166, 279, 738 |
| HhaI | GCGC | 2 cut(s) | 40, 215 |
| Hin1II | CATG | 2 cut(s) | 499, 690 |
| Hin6I | GCGC | 2 cut(s) | 38, 213 |
| HinP1I | GCGC | 2 cut(s) | 38, 213 |
| HpaII | CCGG | 4 cut(s) | 98, 166, 279, 738 |
| HphI | GGTGA | 7 cut(s) | 87, 96, 119, 124, 180, 185, 283 |
| Hpy188I | TCNGA | 5 cut(s) | 118, 380, 388, 538, 568 |
| Hpy188III | TCNNGA | 2 cut(s) | 371, 529 |
| Hpy99I | CGWCG | 1 cut(s) | 384 |
| HpyAV | CCTTC | 2 cut(s) | 154, 533 |
| HpyCH4IV | ACGT | 1 cut(s) | 162 |
| HpyCH4V | TGCA | 9 cut(s) | 8, 75, 160, 175, 207, 267, 303, 397, 650 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 35, 81, 743, 780 |
| HpyF3I | CTNAG | 3 cut(s) | 516, 535, 696 |
| HpySE526I | ACGT | 1 cut(s) | 162 |
| Hsp92II | CATG | 2 cut(s) | 499, 690 |
| HspAI | GCGC | 2 cut(s) | 38, 213 |
| KroI | GCCGGC | 1 cut(s) | 278 |
| KroNI | GCCGGC | 1 cut(s) | 280 |
| Kzo9I | GATC | 4 cut(s) | 52, 295, 383, 502 |
| LmnI | GCTCC | 5 cut(s) | 223, 254, 342, 719, 765 |
| Lsp1109I | GCAGC | 5 cut(s) | 44, 52, 202, 251, 315 |
| MaeI | CTAG | 1 cut(s) | 275 |
| MaeII | ACGT | 1 cut(s) | 162 |
| MaeIII | GTNAC | 1 cut(s) | 177 |
| MalI | GATC | 4 cut(s) | 54, 297, 385, 504 |
| MboI | GATC | 4 cut(s) | 52, 295, 383, 502 |
| MboII | GAAGA | 5 cut(s) | 465, 468, 497, 500, 503 |
| MhlI | GDGCHC | 2 cut(s) | 251, 552 |
| MmeI | TCCRAC | 4 cut(s) | 373, 403, 530, 697 |
| MroNI | GCCGGC | 1 cut(s) | 278 |
| MspI | CCGG | 4 cut(s) | 98, 166, 279, 738 |
| MspR9I | CCNGG | 1 cut(s) | 406 |
| MvaI | CCWGG | 1 cut(s) | 406 |
| MvnI | CGCG | 1 cut(s) | 483 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 35, 81, 743, 780 |
| NaeI | GCCGGC | 1 cut(s) | 280 |
| NcoI | CCATGG | 1 cut(s) | 686 |
| NdeII | GATC | 4 cut(s) | 52, 295, 383, 502 |
| NgoMIV | GCCGGC | 1 cut(s) | 278 |
| NlaIII | CATG | 2 cut(s) | 499, 690 |
| NlaIV | GGNNCC | 1 cut(s) | 684 |
| NmuCI | GTSAC | 1 cut(s) | 177 |
| NsbI | TGCGCA | 1 cut(s) | 39 |
| PaqCI | CACCTGC | 1 cut(s) | 212 |
| PdiI | GCCGGC | 1 cut(s) | 280 |
| PfoI | TCCNGGA | 1 cut(s) | 404 |
| PkrI | GCNGC | 5 cut(s) | 42, 59, 217, 266, 305 |
| Ple19I | CGATCG | 1 cut(s) | 55 |
| Psp6I | CCWGG | 1 cut(s) | 404 |
| PspFI | CCCAGC | 3 cut(s) | 15, 61, 227 |
| PspGI | CCWGG | 1 cut(s) | 404 |
| PspN4I | GGNNCC | 1 cut(s) | 684 |
| PspPI | GGNCC | 3 cut(s) | 27, 408, 683 |
| PstI | CTGCAG | 2 cut(s) | 77, 305 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| PvuI | CGATCG | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 332 |
| RsaNI | GTAC | 1 cut(s) | 331 |
| SatI | GCNGC | 5 cut(s) | 41, 58, 216, 265, 304 |
| Sau3AI | GATC | 4 cut(s) | 52, 295, 383, 502 |
| Sau96I | GGNCC | 3 cut(s) | 27, 408, 683 |
| ScrFI | CCNGG | 1 cut(s) | 406 |
| SduI | GDGCHC | 2 cut(s) | 251, 552 |
| SfcI | CTRYAG | 2 cut(s) | 73, 301 |
| SinI | GGWCC | 1 cut(s) | 408 |
| SmlI | CTYRAG | 1 cut(s) | 545 |
| SmoI | CTYRAG | 1 cut(s) | 545 |
| SspMI | CTAG | 1 cut(s) | 275 |
| StyD4I | CCNGG | 1 cut(s) | 404 |
| StyI | CCWWGG | 2 cut(s) | 672, 686 |
| TaiI | ACGT | 1 cut(s) | 165 |
| TaqI | TCGA | 2 cut(s) | 422, 511 |
| TaqII | GACCGA | 1 cut(s) | 135 |
| TatI | WGTACW | 1 cut(s) | 330 |
| TscAI | CASTG | 3 cut(s) | 116, 186, 607 |
| TseFI | GTSAC | 1 cut(s) | 177 |
| TseI | GCWGC | 5 cut(s) | 40, 57, 215, 264, 303 |
| Tsp45I | GTSAC | 1 cut(s) | 177 |
| TspDTI | ATGAA | 1 cut(s) | 645 |
| TspRI | CASTG | 3 cut(s) | 116, 186, 607 |
| VpaK11BI | GGWCC | 1 cut(s) | 408 |
| XspI | CTAG | 1 cut(s) | 275 |