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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 267 |
| AciI | CCGC | 1 cut(s) | 265 |
| AclWI | GGATC | 4 cut(s) | 2, 119, 610, 671 |
| AcsI | RAATTY | 1 cut(s) | 546 |
| AcuI | CTGAAG | 1 cut(s) | 146 |
| AcvI | CACGTG | 1 cut(s) | 628 |
| AdeI | CACNNNGTG | 1 cut(s) | 646 |
| AfaI | GTAC | 3 cut(s) | 59, 158, 739 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 67, 241, 597 |
| AflIII | ACRYGT | 2 cut(s) | 306, 609 |
| AgsI | TTSAA | 3 cut(s) | 169, 460, 514 |
| AjiI | CACGTC | 2 cut(s) | 326, 610 |
| AjnI | CCWGG | 2 cut(s) | 235, 524 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 231, 263 |
| AluBI | AGCT | 1 cut(s) | 401 |
| AluI | AGCT | 1 cut(s) | 401 |
| Alw26I | GTCTC | 2 cut(s) | 332, 487 |
| AlwI | GGATC | 4 cut(s) | 2, 119, 610, 671 |
| Ama87I | CYCGRG | 1 cut(s) | 551 |
| AoxI | GGCC | 1 cut(s) | 527 |
| ApoI | RAATTY | 1 cut(s) | 546 |
| AspLEI | GCGC | 1 cut(s) | 315 |
| AspS9I | GGNCC | 1 cut(s) | 528 |
| AvaI | CYCGRG | 1 cut(s) | 551 |
| BbrPI | CACGTG | 1 cut(s) | 628 |
| BbsI | GAAGAC | 1 cut(s) | 176 |
| BccI | CCATC | 1 cut(s) | 69 |
| BciT130I | CCWGG | 2 cut(s) | 237, 526 |
| BclI | TGATCA | 1 cut(s) | 52 |
| BcoDI | GTCTC | 2 cut(s) | 332, 487 |
| BfaI | CTAG | 1 cut(s) | 410 |
| BfmI | CTRYAG | 1 cut(s) | 711 |
| Bme1390I | CCNGG | 2 cut(s) | 237, 526 |
| BmeT110I | CYCGRG | 1 cut(s) | 551 |
| BmgBI | CACGTC | 2 cut(s) | 326, 610 |
| BmgT120I | GGNCC | 1 cut(s) | 528 |
| BmrFI | CCNGG | 2 cut(s) | 237, 526 |
| BmrI | ACTGGG | 1 cut(s) | 543 |
| BmsI | GCATC | 2 cut(s) | 181, 668 |
| BmuI | ACTGGG | 1 cut(s) | 543 |
| BpiI | GAAGAC | 1 cut(s) | 176 |
| BsaAI | YACGTR | 1 cut(s) | 628 |
| BsaJI | CCNNGG | 2 cut(s) | 235, 552 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 67, 241, 597 |
| Bse1I | ACTGG | 3 cut(s) | 246, 418, 538 |
| BseBI | CCWGG | 2 cut(s) | 237, 526 |
| BseDI | CCNNGG | 2 cut(s) | 235, 552 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 67, 241, 597 |
| BseMII | CTCAG | 3 cut(s) | 12, 54, 480 |
| BseNI | ACTGG | 3 cut(s) | 246, 418, 538 |
| Bsh1236I | CGCG | 1 cut(s) | 267 |
| BshFI | GGCC | 1 cut(s) | 529 |
| BsiHKCI | CYCGRG | 1 cut(s) | 551 |
| BslFI | GGGAC | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 67, 241, 597 |
| BsmAI | GTCTC | 2 cut(s) | 332, 487 |
| BsmBI | CGTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 1 cut(s) | 550 |
| BsnI | GGCC | 1 cut(s) | 529 |
| BsoBI | CYCGRG | 1 cut(s) | 551 |
| Bsp143I | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| BspACI | CCGC | 1 cut(s) | 265 |
| BspANI | GGCC | 1 cut(s) | 529 |
| BspCNI | CTCAG | 3 cut(s) | 13, 53, 481 |
| BspFNI | CGCG | 1 cut(s) | 267 |
| BspHI | TCATGA | 1 cut(s) | 220 |
| BspPI | GGATC | 4 cut(s) | 2, 119, 610, 671 |
| BsrI | ACTGG | 3 cut(s) | 246, 418, 538 |
| BssECI | CCNNGG | 2 cut(s) | 235, 552 |
| BssMI | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| Bst2UI | CCWGG | 2 cut(s) | 237, 526 |
| BstBAI | YACGTR | 1 cut(s) | 628 |
| BstC8I | GCNNGC | 1 cut(s) | 269 |
| BstDEI | CTNAG | 3 cut(s) | 21, 40, 489 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstFNI | CGCG | 1 cut(s) | 267 |
| BstHHI | GCGC | 1 cut(s) | 315 |
| BstKTI | GATC | 6 cut(s) | 10, 55, 127, 369, 618, 666 |
| BstMAI | GTCTC | 2 cut(s) | 332, 487 |
| BstMBI | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 95 |
| BstNI | CCWGG | 2 cut(s) | 237, 526 |
| BstNSI | RCATGY | 1 cut(s) | 310 |
| BstSCI | CCNGG | 2 cut(s) | 235, 524 |
| BstSFI | CTRYAG | 1 cut(s) | 711 |
| BstUI | CGCG | 1 cut(s) | 267 |
| BstV2I | GAAGAC | 1 cut(s) | 176 |
| BsuRI | GGCC | 1 cut(s) | 529 |
| BtrI | CACGTC | 2 cut(s) | 326, 610 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| BtsI | GCAGTG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 257, 531 |
| Cac8I | GCNNGC | 1 cut(s) | 269 |
| CciI | TCATGA | 1 cut(s) | 220 |
| CfoI | GCGC | 1 cut(s) | 315 |
| Cfr13I | GGNCC | 1 cut(s) | 528 |
| Csp6I | GTAC | 3 cut(s) | 58, 157, 738 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 319, 354 |
| CviAII | CATG | 4 cut(s) | 221, 307, 658, 707 |
| CviJI | RGCY | 7 cut(s) | 5, 245, 401, 474, 488, 529, 557 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 245, 401, 474, 488, 529, 557 |
| CviQI | GTAC | 3 cut(s) | 58, 157, 738 |
| DdeI | CTNAG | 3 cut(s) | 21, 40, 489 |
| DpnI | GATC | 6 cut(s) | 9, 54, 126, 368, 617, 665 |
| DpnII | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| DraIII | CACNNNGTG | 1 cut(s) | 646 |
| Eco57I | CTGAAG | 1 cut(s) | 146 |
| Eco72I | CACGTG | 1 cut(s) | 628 |
| Eco88I | CYCGRG | 1 cut(s) | 551 |
| EcoRII | CCWGG | 2 cut(s) | 235, 524 |
| Esp3I | CGTCTC | 1 cut(s) | 332 |
| FaeI | CATG | 4 cut(s) | 224, 310, 661, 710 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 494, 526 |
| FaqI | GGGAC | 1 cut(s) | 550 |
| FatI | CATG | 4 cut(s) | 220, 306, 657, 706 |
| FbaI | TGATCA | 1 cut(s) | 52 |
| FokI | GGATG | 1 cut(s) | 203 |
| FspBI | CTAG | 1 cut(s) | 410 |
| GlaI | GCGC | 1 cut(s) | 314 |
| HaeIII | GGCC | 1 cut(s) | 529 |
| HhaI | GCGC | 1 cut(s) | 315 |
| Hin1II | CATG | 4 cut(s) | 224, 310, 661, 710 |
| Hin6I | GCGC | 1 cut(s) | 313 |
| HinP1I | GCGC | 1 cut(s) | 313 |
| HincII | GTYRAC | 1 cut(s) | 696 |
| HindII | GTYRAC | 1 cut(s) | 696 |
| HinfI | GANTC | 6 cut(s) | 38, 261, 376, 447, 505, 722 |
| Hpy166II | GTNNAC | 1 cut(s) | 696 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 76 |
| Hpy188III | TCNNGA | 3 cut(s) | 221, 511, 551 |
| Hpy8I | GTNNAC | 1 cut(s) | 696 |
| HpyAV | CCTTC | 4 cut(s) | 38, 170, 336, 466 |
| HpyCH4IV | ACGT | 4 cut(s) | 205, 325, 609, 627 |
| HpyCH4V | TGCA | 3 cut(s) | 481, 596, 640 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 95 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 40, 489 |
| HpySE526I | ACGT | 4 cut(s) | 205, 325, 609, 627 |
| Hsp92II | CATG | 4 cut(s) | 224, 310, 661, 710 |
| HspAI | GCGC | 1 cut(s) | 313 |
| Ksp22I | TGATCA | 1 cut(s) | 52 |
| Kzo9I | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| LmnI | GCTCC | 1 cut(s) | 237 |
| LpnPI | CCDG | 9 cut(s) | 33, 222, 227, 249, 431, 511, 519, 538, 652 |
| LweI | GCATC | 2 cut(s) | 181, 668 |
| MaeI | CTAG | 1 cut(s) | 410 |
| MaeII | ACGT | 4 cut(s) | 205, 325, 609, 627 |
| MaeIII | GTNAC | 1 cut(s) | 628 |
| MalI | GATC | 6 cut(s) | 9, 54, 126, 368, 617, 665 |
| MboI | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| MboII | GAAGA | 2 cut(s) | 181, 368 |
| MfeI | CAATTG | 1 cut(s) | 425 |
| MluCI | AATT | 6 cut(s) | 331, 394, 425, 464, 546, 559 |
| MlyI | GAGTC | 2 cut(s) | 32, 370 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 1 cut(s) | 547 |
| MseI | TTAA | 3 cut(s) | 198, 297, 317 |
| MspR9I | CCNGG | 2 cut(s) | 237, 526 |
| MunI | CAATTG | 1 cut(s) | 425 |
| MvaI | CCWGG | 2 cut(s) | 237, 526 |
| MvnI | CGCG | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 95 |
| NdeII | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| NlaIII | CATG | 4 cut(s) | 224, 310, 661, 710 |
| NmuCI | GTSAC | 1 cut(s) | 628 |
| NspI | RCATGY | 1 cut(s) | 310 |
| PagI | TCATGA | 1 cut(s) | 220 |
| PciI | ACATGT | 1 cut(s) | 306 |
| PfeI | GAWTC | 4 cut(s) | 261, 447, 505, 722 |
| PleI | GAGTC | 2 cut(s) | 32, 370 |
| PmaCI | CACGTG | 1 cut(s) | 628 |
| PmlI | CACGTG | 1 cut(s) | 628 |
| PpsI | GAGTC | 2 cut(s) | 32, 370 |
| Ppu21I | YACGTR | 1 cut(s) | 628 |
| PscI | ACATGT | 1 cut(s) | 306 |
| Psp6I | CCWGG | 2 cut(s) | 235, 524 |
| PspCI | CACGTG | 1 cut(s) | 628 |
| PspGI | CCWGG | 2 cut(s) | 235, 524 |
| PspPI | GGNCC | 1 cut(s) | 528 |
| RsaI | GTAC | 3 cut(s) | 59, 158, 739 |
| RsaNI | GTAC | 3 cut(s) | 58, 157, 738 |
| SaqAI | TTAA | 3 cut(s) | 198, 297, 317 |
| Sau3AI | GATC | 6 cut(s) | 7, 52, 124, 366, 615, 663 |
| Sau96I | GGNCC | 1 cut(s) | 528 |
| SchI | GAGTC | 2 cut(s) | 32, 370 |
| ScrFI | CCNGG | 2 cut(s) | 237, 526 |
| SfaNI | GCATC | 2 cut(s) | 181, 668 |
| SfcI | CTRYAG | 1 cut(s) | 711 |
| Sse9I | AATT | 6 cut(s) | 331, 394, 425, 464, 546, 559 |
| SsiI | CCGC | 1 cut(s) | 265 |
| SspMI | CTAG | 1 cut(s) | 410 |
| StyD4I | CCNGG | 2 cut(s) | 235, 524 |
| TaiI | ACGT | 4 cut(s) | 208, 328, 612, 630 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 6 cut(s) | 331, 394, 425, 464, 546, 559 |
| TfiI | GAWTC | 4 cut(s) | 261, 447, 505, 722 |
| Tru1I | TTAA | 3 cut(s) | 198, 297, 317 |
| Tru9I | TTAA | 3 cut(s) | 198, 297, 317 |
| TscAI | CASTG | 3 cut(s) | 115, 257, 538 |
| TseFI | GTSAC | 1 cut(s) | 628 |
| Tsp45I | GTSAC | 1 cut(s) | 628 |
| TspDTI | ATGAA | 6 cut(s) | 153, 209, 587, 701, 714, 716 |
| TspRI | CASTG | 3 cut(s) | 115, 257, 538 |
| XapI | RAATTY | 1 cut(s) | 546 |
| XceI | RCATGY | 1 cut(s) | 310 |
| XspI | CTAG | 1 cut(s) | 410 |