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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1098 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 698 |
| AccI | GTMKAC | 1 cut(s) | 1123 |
| AccII | CGCG | 1 cut(s) | 1634 |
| AciI | CCGC | 3 cut(s) | 241, 319, 1632 |
| AclWI | GGATC | 3 cut(s) | 2, 185, 1338 |
| AcsI | RAATTY | 1 cut(s) | 1239 |
| AcuI | CTGAAG | 2 cut(s) | 200, 945 |
| AfaI | GTAC | 3 cut(s) | 56, 212, 530 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| AflIII | ACRYGT | 1 cut(s) | 360 |
| AgsI | TTSAA | 5 cut(s) | 223, 352, 513, 1358, 1402 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 776, 1456 |
| AjiI | CACGTC | 1 cut(s) | 380 |
| AjnI | CCWGG | 3 cut(s) | 1374, 1549, 1638 |
| Alw26I | GTCTC | 2 cut(s) | 386, 599 |
| AlwI | GGATC | 3 cut(s) | 2, 185, 1338 |
| ApeKI | GCWGC | 2 cut(s) | 865, 1413 |
| ApoI | RAATTY | 1 cut(s) | 1239 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1138, 1170 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1564, 1624 |
| AspLEI | GCGC | 3 cut(s) | 369, 521, 598 |
| AspS9I | GGNCC | 2 cut(s) | 615, 1146 |
| AsuHPI | GGTGA | 2 cut(s) | 163, 925 |
| AvaII | GGWCC | 2 cut(s) | 615, 1146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BauI | CACGAG | 1 cut(s) | 1305 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| BbvI | GCAGC | 2 cut(s) | 852, 1425 |
| BccI | CCATC | 6 cut(s) | 66, 617, 647, 900, 1567, 1610 |
| BciT130I | CCWGG | 3 cut(s) | 1376, 1551, 1640 |
| BcoDI | GTCTC | 2 cut(s) | 386, 599 |
| BfaI | CTAG | 7 cut(s) | 195, 296, 464, 582, 876, 911, 1295 |
| BfmI | CTRYAG | 1 cut(s) | 1514 |
| BfoI | RGCGCY | 1 cut(s) | 599 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 2 cut(s) | 866, 1414 |
| BlpI | GCTNAGC | 1 cut(s) | 592 |
| BlsI | GCNGC | 2 cut(s) | 867, 1415 |
| Bme1390I | CCNGG | 3 cut(s) | 1376, 1551, 1640 |
| Bme18I | GGWCC | 2 cut(s) | 615, 1146 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 776, 1456 |
| BmgBI | CACGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 2 cut(s) | 615, 1146 |
| BmiI | GGNNCC | 1 cut(s) | 616 |
| BmrFI | CCNGG | 3 cut(s) | 1376, 1551, 1640 |
| BmrI | ACTGGG | 1 cut(s) | 1359 |
| BmsI | GCATC | 4 cut(s) | 151, 235, 958, 1633 |
| BmuI | ACTGGG | 1 cut(s) | 1359 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1266 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 592 |
| BpuEI | CTTGAG | 3 cut(s) | 71, 845, 1492 |
| Bsa29I | ATCGAT | 1 cut(s) | 1623 |
| BsaJI | CCNNGG | 3 cut(s) | 1227, 1550, 1582 |
| BsaWI | WCCGGW | 1 cut(s) | 1126 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| Bse1I | ACTGG | 4 cut(s) | 472, 763, 1354, 1540 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseBI | CCWGG | 3 cut(s) | 1376, 1551, 1640 |
| BseCI | ATCGAT | 1 cut(s) | 1623 |
| BseDI | CCNNGG | 3 cut(s) | 1227, 1550, 1582 |
| BseGI | GGATG | 4 cut(s) | 250, 911, 949, 1648 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 6 cut(s) | 12, 54, 167, 579, 606, 1419 |
| BseNI | ACTGG | 4 cut(s) | 472, 763, 1354, 1540 |
| BseXI | GCAGC | 2 cut(s) | 852, 1425 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| Bsh1236I | CGCG | 1 cut(s) | 1634 |
| BshVI | ATCGAT | 1 cut(s) | 1623 |
| BsiSI | CCGG | 1 cut(s) | 1127 |
| BslFI | GGGAC | 4 cut(s) | 628, 764, 1221, 1567 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 205 |
| BsmAI | GTCTC | 2 cut(s) | 386, 599 |
| BsmBI | CGTCTC | 1 cut(s) | 386 |
| BsmFI | GGGAC | 4 cut(s) | 628, 764, 1221, 1567 |
| BsmI | GAATGC | 1 cut(s) | 560 |
| Bsp143I | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 592 |
| Bsp19I | CCATGG | 1 cut(s) | 1582 |
| BspACI | CCGC | 3 cut(s) | 241, 319, 1632 |
| BspCNI | CTCAG | 6 cut(s) | 13, 53, 168, 578, 605, 1418 |
| BspDI | ATCGAT | 1 cut(s) | 1623 |
| BspFNI | CGCG | 1 cut(s) | 1634 |
| BspLI | GGNNCC | 1 cut(s) | 616 |
| BspPI | GGATC | 3 cut(s) | 2, 185, 1338 |
| BspQI | GCTCTTC | 1 cut(s) | 1555 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrI | ACTGG | 4 cut(s) | 472, 763, 1354, 1540 |
| BssECI | CCNNGG | 3 cut(s) | 1227, 1550, 1582 |
| BssMI | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| BssSI | CACGAG | 1 cut(s) | 1305 |
| BssT1I | CCWWGG | 1 cut(s) | 1582 |
| Bst2BI | CACGAG | 1 cut(s) | 1305 |
| Bst2UI | CCWGG | 3 cut(s) | 1376, 1551, 1640 |
| Bst4CI | ACNGT | 4 cut(s) | 619, 919, 1084, 1518 |
| Bst6I | CTCTTC | 2 cut(s) | 1459, 1555 |
| BstC8I | GCNNGC | 4 cut(s) | 323, 1272, 1363, 1411 |
| BstDEI | CTNAG | 8 cut(s) | 21, 40, 176, 532, 565, 592, 1266, 1405 |
| BstDSI | CCRYGG | 2 cut(s) | 1227, 1582 |
| BstF5I | GGATG | 4 cut(s) | 250, 911, 949, 1648 |
| BstFNI | CGCG | 1 cut(s) | 1634 |
| BstH2I | RGCGCY | 1 cut(s) | 599 |
| BstHHI | GCGC | 3 cut(s) | 369, 521, 598 |
| BstKTI | GATC | 6 cut(s) | 10, 193, 423, 1248, 1346, 1383 |
| BstMAI | GTCTC | 2 cut(s) | 386, 599 |
| BstMBI | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 865, 1367, 1376, 1469 |
| BstNI | CCWGG | 3 cut(s) | 1376, 1551, 1640 |
| BstNSI | RCATGY | 1 cut(s) | 364 |
| BstSCI | CCNGG | 3 cut(s) | 1374, 1549, 1638 |
| BstSFI | CTRYAG | 1 cut(s) | 1514 |
| BstUI | CGCG | 1 cut(s) | 1634 |
| BstV1I | GCAGC | 2 cut(s) | 852, 1425 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BstX2I | RGATCY | 1 cut(s) | 1343 |
| BstYI | RGATCY | 1 cut(s) | 1343 |
| Bsu15I | ATCGAT | 1 cut(s) | 1623 |
| BsuTUI | ATCGAT | 1 cut(s) | 1623 |
| BtgI | CCRYGG | 2 cut(s) | 1227, 1582 |
| BtrI | CACGTC | 1 cut(s) | 380 |
| BtsCI | GGATG | 4 cut(s) | 250, 911, 949, 1648 |
| BtsI | GCAGTG | 3 cut(s) | 105, 236, 1428 |
| BtsIMutI | CAGTG | 7 cut(s) | 105, 236, 311, 573, 1347, 1428, 1547 |
| Cac8I | GCNNGC | 4 cut(s) | 323, 1272, 1363, 1411 |
| CfoI | GCGC | 3 cut(s) | 369, 521, 598 |
| Cfr13I | GGNCC | 2 cut(s) | 615, 1146 |
| ClaI | ATCGAT | 1 cut(s) | 1623 |
| CseI | GACGC | 1 cut(s) | 652 |
| Csp6I | GTAC | 3 cut(s) | 55, 211, 529 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 373, 408, 1336, 1371 |
| CviAII | CATG | 5 cut(s) | 361, 965, 1087, 1448, 1583 |
| CviQI | GTAC | 3 cut(s) | 55, 211, 529 |
| DdeI | CTNAG | 8 cut(s) | 21, 40, 176, 532, 565, 592, 1266, 1405 |
| DpnI | GATC | 6 cut(s) | 9, 192, 422, 1247, 1345, 1382 |
| DpnII | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 698 |
| DriI | GACNNNNNGTC | 2 cut(s) | 776, 1456 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 698 |
| Eam1104I | CTCTTC | 2 cut(s) | 1459, 1555 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 776, 1456 |
| EarI | CTCTTC | 2 cut(s) | 1459, 1555 |
| Eco130I | CCWWGG | 1 cut(s) | 1582 |
| Eco47I | GGWCC | 2 cut(s) | 615, 1146 |
| Eco57I | CTGAAG | 2 cut(s) | 200, 945 |
| EcoRII | CCWGG | 3 cut(s) | 1374, 1549, 1638 |
| EcoT14I | CCWWGG | 1 cut(s) | 1582 |
| ErhI | CCWWGG | 1 cut(s) | 1582 |
| Esp3I | CGTCTC | 1 cut(s) | 386 |
| FaeI | CATG | 5 cut(s) | 364, 968, 1090, 1451, 1586 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 737, 769, 875, 907, 1031, 1063 |
| FaqI | GGGAC | 4 cut(s) | 628, 764, 1221, 1567 |
| FatI | CATG | 5 cut(s) | 360, 964, 1086, 1447, 1582 |
| FauI | CCCGC | 2 cut(s) | 234, 1639 |
| FblI | GTMKAC | 1 cut(s) | 1123 |
| Fnu4HI | GCNGC | 2 cut(s) | 866, 1414 |
| FokI | GGATG | 3 cut(s) | 257, 918, 936 |
| Fsp4HI | GCNGC | 2 cut(s) | 866, 1414 |
| FspBI | CTAG | 7 cut(s) | 195, 296, 464, 582, 876, 911, 1295 |
| GlaI | GCGC | 3 cut(s) | 368, 520, 597 |
| GluI | GCNGC | 2 cut(s) | 866, 1414 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeII | RGCGCY | 1 cut(s) | 599 |
| HapII | CCGG | 1 cut(s) | 1127 |
| HgaI | GACGC | 1 cut(s) | 652 |
| HhaI | GCGC | 3 cut(s) | 369, 521, 598 |
| Hin1II | CATG | 5 cut(s) | 364, 968, 1090, 1451, 1586 |
| Hin6I | GCGC | 3 cut(s) | 367, 519, 596 |
| HinP1I | GCGC | 3 cut(s) | 367, 519, 596 |
| HincII | GTYRAC | 2 cut(s) | 1224, 1429 |
| HindII | GTYRAC | 2 cut(s) | 1224, 1429 |
| HindIII | AAGCTT | 1 cut(s) | 1101 |
| HpaI | GTTAAC | 1 cut(s) | 1429 |
| HpaII | CCGG | 1 cut(s) | 1127 |
| HphI | GGTGA | 2 cut(s) | 163, 925 |
| Hpy166II | GTNNAC | 6 cut(s) | 70, 571, 853, 1124, 1224, 1429 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 177, 925, 1385, 1391 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 1341, 1509 |
| Hpy8I | GTNNAC | 6 cut(s) | 70, 571, 853, 1124, 1224, 1429 |
| HpyCH4III | ACNGT | 4 cut(s) | 619, 919, 1084, 1518 |
| HpyCH4IV | ACGT | 4 cut(s) | 259, 379, 693, 807 |
| HpyCH4V | TGCA | 6 cut(s) | 560, 632, 949, 1236, 1370, 1413 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 865, 1367, 1376, 1469 |
| HpyF3I | CTNAG | 8 cut(s) | 21, 40, 176, 532, 565, 592, 1266, 1405 |
| HpySE526I | ACGT | 4 cut(s) | 259, 379, 693, 807 |
| Hsp92II | CATG | 5 cut(s) | 364, 968, 1090, 1451, 1586 |
| HspAI | GCGC | 3 cut(s) | 367, 519, 596 |
| KspAI | GTTAAC | 1 cut(s) | 1429 |
| Kzo9I | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| LguI | GCTCTTC | 1 cut(s) | 1555 |
| Lsp1109I | GCAGC | 2 cut(s) | 852, 1425 |
| LweI | GCATC | 4 cut(s) | 151, 235, 958, 1633 |
| MaeI | CTAG | 7 cut(s) | 195, 296, 464, 582, 876, 911, 1295 |
| MaeII | ACGT | 4 cut(s) | 259, 379, 693, 807 |
| MaeIII | GTNAC | 4 cut(s) | 664, 913, 1250, 1490 |
| MalI | GATC | 6 cut(s) | 9, 192, 422, 1247, 1345, 1382 |
| MboI | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| MboII | GAAGA | 7 cut(s) | 235, 422, 782, 785, 1056, 1446, 1572 |
| MflI | RGATCY | 1 cut(s) | 1343 |
| MluCI | AATT | 8 cut(s) | 385, 448, 539, 972, 996, 1141, 1211, 1239 |
| MlyI | GAGTC | 6 cut(s) | 32, 424, 828, 1153, 1445, 1587 |
| MmeI | TCCRAC | 2 cut(s) | 35, 462 |
| MnlI | CCTC | 8 cut(s) | 171, 605, 720, 963, 999, 1179, 1475, 1586 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1564, 1624 |
| MseI | TTAA | 8 cut(s) | 167, 252, 371, 975, 999, 1028, 1257, 1428 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1085 |
| MspI | CCGG | 1 cut(s) | 1127 |
| MspR9I | CCNGG | 3 cut(s) | 1376, 1551, 1640 |
| Mva1269I | GAATGC | 1 cut(s) | 560 |
| MvaI | CCWGG | 3 cut(s) | 1376, 1551, 1640 |
| MvnI | CGCG | 1 cut(s) | 1634 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 865, 1367, 1376, 1469 |
| NcoI | CCATGG | 1 cut(s) | 1582 |
| NdeII | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| NlaIII | CATG | 5 cut(s) | 364, 968, 1090, 1451, 1586 |
| NlaIV | GGNNCC | 1 cut(s) | 616 |
| NmuCI | GTSAC | 3 cut(s) | 664, 913, 1250 |
| NspI | RCATGY | 1 cut(s) | 364 |
| PciI | ACATGT | 1 cut(s) | 360 |
| PciSI | GCTCTTC | 1 cut(s) | 1555 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 699, 813 |
| PctI | GAATGC | 1 cut(s) | 560 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1564, 1624 |
| PfeI | GAWTC | 8 cut(s) | 315, 501, 719, 930, 1386, 1485, 1620, 1625 |
| PkrI | GCNGC | 2 cut(s) | 867, 1415 |
| PleI | GAGTC | 6 cut(s) | 32, 424, 828, 1153, 1445, 1586 |
| PpsI | GAGTC | 6 cut(s) | 32, 424, 828, 1153, 1445, 1586 |
| PscI | ACATGT | 1 cut(s) | 360 |
| PsiI | TTATAA | 1 cut(s) | 1098 |
| Psp6I | CCWGG | 3 cut(s) | 1374, 1549, 1638 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 3 cut(s) | 1374, 1549, 1638 |
| PspN4I | GGNNCC | 1 cut(s) | 616 |
| PspPI | GGNCC | 2 cut(s) | 615, 1146 |
| PsuI | RGATCY | 1 cut(s) | 1343 |
| RsaI | GTAC | 3 cut(s) | 56, 212, 530 |
| RsaNI | GTAC | 3 cut(s) | 55, 211, 529 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1085 |
| SapI | GCTCTTC | 1 cut(s) | 1555 |
| SaqAI | TTAA | 8 cut(s) | 167, 252, 371, 975, 999, 1028, 1257, 1428 |
| SatI | GCNGC | 2 cut(s) | 866, 1414 |
| Sau3AI | GATC | 6 cut(s) | 7, 190, 420, 1245, 1343, 1380 |
| Sau96I | GGNCC | 2 cut(s) | 615, 1146 |
| SchI | GAGTC | 6 cut(s) | 32, 424, 828, 1153, 1445, 1587 |
| ScrFI | CCNGG | 3 cut(s) | 1376, 1551, 1640 |
| SfaNI | GCATC | 4 cut(s) | 151, 235, 958, 1633 |
| SfcI | CTRYAG | 1 cut(s) | 1514 |
| SinI | GGWCC | 2 cut(s) | 615, 1146 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1085 |
| SmlI | CTYRAG | 3 cut(s) | 50, 860, 1507 |
| SmoI | CTYRAG | 3 cut(s) | 50, 860, 1507 |
| Sse9I | AATT | 8 cut(s) | 385, 448, 539, 972, 996, 1141, 1211, 1239 |
| SsiI | CCGC | 3 cut(s) | 241, 319, 1632 |
| SspMI | CTAG | 7 cut(s) | 195, 296, 464, 582, 876, 911, 1295 |
| StyD4I | CCNGG | 3 cut(s) | 1374, 1549, 1638 |
| StyI | CCWWGG | 1 cut(s) | 1582 |
| TaaI | ACNGT | 4 cut(s) | 619, 919, 1084, 1518 |
| TaiI | ACGT | 4 cut(s) | 262, 382, 696, 810 |
| TaqI | TCGA | 6 cut(s) | 16, 547, 702, 1067, 1480, 1623 |
| TasI | AATT | 8 cut(s) | 385, 448, 539, 972, 996, 1141, 1211, 1239 |
| TatI | WGTACW | 1 cut(s) | 528 |
| TfiI | GAWTC | 8 cut(s) | 315, 501, 719, 930, 1386, 1485, 1620, 1625 |
| Tru1I | TTAA | 8 cut(s) | 167, 252, 371, 975, 999, 1028, 1257, 1428 |
| Tru9I | TTAA | 8 cut(s) | 167, 252, 371, 975, 999, 1028, 1257, 1428 |
| TscAI | CASTG | 7 cut(s) | 112, 243, 311, 573, 1354, 1428, 1547 |
| TseFI | GTSAC | 3 cut(s) | 664, 913, 1250 |
| TseI | GCWGC | 2 cut(s) | 865, 1413 |
| Tsp45I | GTSAC | 3 cut(s) | 664, 913, 1250 |
| TspDTI | ATGAA | 2 cut(s) | 150, 755 |
| TspGWI | ACGGA | 3 cut(s) | 60, 805, 1244 |
| TspRI | CASTG | 7 cut(s) | 112, 243, 311, 573, 1354, 1428, 1547 |
| VpaK11BI | GGWCC | 2 cut(s) | 615, 1146 |
| XapI | RAATTY | 1 cut(s) | 1239 |
| XceI | RCATGY | 1 cut(s) | 364 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1547 |
| XmiI | GTMKAC | 1 cut(s) | 1123 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1564, 1624 |
| XspI | CTAG | 7 cut(s) | 195, 296, 464, 582, 876, 911, 1295 |