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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 584 |
| AccII | CGCG | 1 cut(s) | 62 |
| AciI | CCGC | 1 cut(s) | 535 |
| AcuI | CTGAAG | 2 cut(s) | 416, 651 |
| AfaI | GTAC | 3 cut(s) | 36, 272, 428 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 280, 421, 511, 522 |
| AflII | CTTAAG | 2 cut(s) | 382, 467 |
| AflIII | ACRYGT | 1 cut(s) | 576 |
| AgsI | TTSAA | 5 cut(s) | 439, 568, 730, 752, 784 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AluBI | AGCT | 2 cut(s) | 9, 184 |
| AluI | AGCT | 2 cut(s) | 9, 184 |
| Alw21I | GWGCWC | 2 cut(s) | 11, 186 |
| Alw26I | GTCTC | 2 cut(s) | 602, 757 |
| Ama87I | CYCGRG | 1 cut(s) | 179 |
| AoxI | GGCC | 3 cut(s) | 65, 208, 513 |
| AspLEI | GCGC | 1 cut(s) | 585 |
| AsuC2I | CCSGG | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 2 cut(s) | 3, 379 |
| AvaI | CYCGRG | 1 cut(s) | 179 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 254, 287 |
| BanII | GRGCYC | 2 cut(s) | 11, 186 |
| BbsI | GAAGAC | 2 cut(s) | 123, 446 |
| Bbv12I | GWGCWC | 2 cut(s) | 11, 186 |
| BbvCI | CCTCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 2 cut(s) | 49, 104 |
| BceAI | ACGGC | 2 cut(s) | 52, 195 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BcnI | CCSGG | 1 cut(s) | 261 |
| BcoDI | GTCTC | 2 cut(s) | 602, 757 |
| BfaI | CTAG | 2 cut(s) | 411, 680 |
| BfrI | CTTAAG | 2 cut(s) | 382, 467 |
| BfuAI | ACCTGC | 1 cut(s) | 584 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 261 |
| BmeT110I | CYCGRG | 1 cut(s) | 179 |
| BmrFI | CCNGG | 2 cut(s) | 83, 261 |
| BmsI | GCATC | 1 cut(s) | 451 |
| BpiI | GAAGAC | 2 cut(s) | 123, 446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 155, 187 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BpuMI | CCSGG | 1 cut(s) | 261 |
| BsaI | GGTCTC | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 280, 421, 511, 522 |
| Bse1I | ACTGG | 2 cut(s) | 516, 688 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 1 cut(s) | 205 |
| BseGI | GGATG | 2 cut(s) | 466, 486 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 280, 421, 511, 522 |
| BseMII | CTCAG | 3 cut(s) | 158, 383, 750 |
| BseNI | ACTGG | 2 cut(s) | 516, 688 |
| BseYI | CCCAGC | 1 cut(s) | 420 |
| Bsh1236I | CGCG | 1 cut(s) | 62 |
| BshFI | GGCC | 3 cut(s) | 67, 210, 515 |
| BsiHKAI | GWGCWC | 2 cut(s) | 11, 186 |
| BsiHKCI | CYCGRG | 1 cut(s) | 179 |
| BsiSI | CCGG | 1 cut(s) | 261 |
| BslFI | GGGAC | 2 cut(s) | 186, 486 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 280, 421, 511, 522 |
| BsmAI | GTCTC | 2 cut(s) | 602, 757 |
| BsmFI | GGGAC | 2 cut(s) | 186, 486 |
| BsnI | GGCC | 3 cut(s) | 67, 210, 515 |
| Bso31I | GGTCTC | 1 cut(s) | 602 |
| BsoBI | CYCGRG | 1 cut(s) | 179 |
| Bsp1286I | GDGCHC | 2 cut(s) | 11, 186 |
| Bsp143I | GATC | 2 cut(s) | 175, 636 |
| BspACI | CCGC | 1 cut(s) | 535 |
| BspANI | GGCC | 3 cut(s) | 67, 210, 515 |
| BspCNI | CTCAG | 3 cut(s) | 157, 384, 751 |
| BspFNI | CGCG | 1 cut(s) | 62 |
| BspMI | ACCTGC | 1 cut(s) | 584 |
| BspTI | CTTAAG | 2 cut(s) | 382, 467 |
| BspTNI | GGTCTC | 1 cut(s) | 602 |
| BsrI | ACTGG | 2 cut(s) | 516, 688 |
| BssECI | CCNNGG | 1 cut(s) | 205 |
| BssMI | GATC | 2 cut(s) | 175, 636 |
| BssT1I | CCWWGG | 1 cut(s) | 205 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 2 cut(s) | 140, 456 |
| BstAFI | CTTAAG | 2 cut(s) | 382, 467 |
| BstC8I | GCNNGC | 1 cut(s) | 539 |
| BstDEI | CTNAG | 3 cut(s) | 144, 392, 759 |
| BstF5I | GGATG | 2 cut(s) | 466, 486 |
| BstFNI | CGCG | 1 cut(s) | 62 |
| BstHHI | GCGC | 1 cut(s) | 585 |
| BstKTI | GATC | 2 cut(s) | 178, 639 |
| BstMAI | GTCTC | 2 cut(s) | 602, 757 |
| BstMBI | GATC | 2 cut(s) | 175, 636 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstNSI | RCATGY | 1 cut(s) | 580 |
| BstSCI | CCNGG | 2 cut(s) | 81, 259 |
| BstUI | CGCG | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 2 cut(s) | 123, 446 |
| BsuRI | GGCC | 3 cut(s) | 67, 210, 515 |
| BtsCI | GGATG | 2 cut(s) | 466, 486 |
| BtsI | GCAGTG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 2 cut(s) | 321, 527 |
| BveI | ACCTGC | 1 cut(s) | 584 |
| Cac8I | GCNNGC | 1 cut(s) | 539 |
| CfoI | GCGC | 1 cut(s) | 585 |
| CseI | GACGC | 1 cut(s) | 68 |
| Csp6I | GTAC | 3 cut(s) | 35, 271, 427 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 589, 624 |
| CviAII | CATG | 2 cut(s) | 491, 577 |
| CviJI | RGCY | 8 cut(s) | 9, 67, 184, 210, 414, 515, 744, 758 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 67, 184, 210, 414, 515, 744, 758 |
| CviQI | GTAC | 3 cut(s) | 35, 271, 427 |
| DdeI | CTNAG | 3 cut(s) | 144, 392, 759 |
| DpnI | GATC | 2 cut(s) | 177, 638 |
| DpnII | GATC | 2 cut(s) | 175, 636 |
| Ecl136II | GAGCTC | 2 cut(s) | 9, 184 |
| Eco130I | CCWWGG | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 2 cut(s) | 11, 186 |
| Eco31I | GGTCTC | 1 cut(s) | 602 |
| Eco53kI | GAGCTC | 2 cut(s) | 9, 184 |
| Eco57I | CTGAAG | 2 cut(s) | 416, 651 |
| Eco88I | CYCGRG | 1 cut(s) | 179 |
| EcoICRI | GAGCTC | 2 cut(s) | 9, 184 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT14I | CCWWGG | 1 cut(s) | 205 |
| EcoT38I | GRGCYC | 2 cut(s) | 11, 186 |
| ErhI | CCWWGG | 1 cut(s) | 205 |
| FaeI | CATG | 2 cut(s) | 494, 580 |
| FaqI | GGGAC | 2 cut(s) | 186, 486 |
| FatI | CATG | 2 cut(s) | 490, 576 |
| FokI | GGATG | 2 cut(s) | 473, 473 |
| FriOI | GRGCYC | 2 cut(s) | 11, 186 |
| FspBI | CTAG | 2 cut(s) | 411, 680 |
| GlaI | GCGC | 1 cut(s) | 584 |
| GsaI | CCCAGC | 1 cut(s) | 424 |
| HaeIII | GGCC | 3 cut(s) | 67, 210, 515 |
| HapII | CCGG | 1 cut(s) | 261 |
| HgaI | GACGC | 1 cut(s) | 68 |
| HhaI | GCGC | 1 cut(s) | 585 |
| Hin1II | CATG | 2 cut(s) | 494, 580 |
| Hin6I | GCGC | 1 cut(s) | 583 |
| HinP1I | GCGC | 1 cut(s) | 583 |
| HinfI | GANTC | 4 cut(s) | 54, 407, 531, 717 |
| HpaII | CCGG | 1 cut(s) | 261 |
| HphI | GGTGA | 2 cut(s) | 3, 379 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 160, 175, 248, 289, 393 |
| Hpy188III | TCNNGA | 4 cut(s) | 76, 179, 222, 781 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 164 |
| HpyAV | CCTTC | 4 cut(s) | 165, 440, 606, 736 |
| HpyCH4III | ACNGT | 2 cut(s) | 140, 456 |
| HpyCH4IV | ACGT | 1 cut(s) | 475 |
| HpyCH4V | TGCA | 2 cut(s) | 190, 302 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 392, 759 |
| HpySE526I | ACGT | 1 cut(s) | 475 |
| Hsp92II | CATG | 2 cut(s) | 494, 580 |
| HspAI | GCGC | 1 cut(s) | 583 |
| Kzo9I | GATC | 2 cut(s) | 175, 636 |
| LmnI | GCTCC | 1 cut(s) | 6 |
| LweI | GCATC | 1 cut(s) | 451 |
| MaeI | CTAG | 2 cut(s) | 411, 680 |
| MaeII | ACGT | 1 cut(s) | 475 |
| MaeIII | GTNAC | 1 cut(s) | 212 |
| MalI | GATC | 2 cut(s) | 177, 638 |
| MboI | GATC | 2 cut(s) | 175, 636 |
| MboII | GAAGA | 5 cut(s) | 116, 119, 128, 451, 638 |
| MfeI | CAATTG | 2 cut(s) | 127, 790 |
| MhlI | GDGCHC | 2 cut(s) | 11, 186 |
| MluCI | AATT | 3 cut(s) | 127, 601, 790 |
| MmeI | TCCRAC | 3 cut(s) | 183, 226, 678 |
| MnlI | CCTC | 8 cut(s) | 57, 83, 106, 153, 157, 161, 387, 766 |
| MseI | TTAA | 3 cut(s) | 383, 468, 587 |
| MspCI | CTTAAG | 2 cut(s) | 382, 467 |
| MspI | CCGG | 1 cut(s) | 261 |
| MspR9I | CCNGG | 2 cut(s) | 83, 261 |
| MunI | CAATTG | 2 cut(s) | 127, 790 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MvnI | CGCG | 1 cut(s) | 62 |
| NciI | CCSGG | 1 cut(s) | 261 |
| NdeII | GATC | 2 cut(s) | 175, 636 |
| NlaIII | CATG | 2 cut(s) | 494, 580 |
| NmuCI | GTSAC | 1 cut(s) | 212 |
| NspI | RCATGY | 1 cut(s) | 580 |
| PaeR7I | CTCGAG | 1 cut(s) | 179 |
| PciI | ACATGT | 1 cut(s) | 576 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 83 |
| PfeI | GAWTC | 4 cut(s) | 54, 407, 531, 717 |
| PfoI | TCCNGGA | 1 cut(s) | 259 |
| PscI | ACATGT | 1 cut(s) | 576 |
| Psp124BI | GAGCTC | 2 cut(s) | 11, 186 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspFI | CCCAGC | 1 cut(s) | 420 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| RsaI | GTAC | 3 cut(s) | 36, 272, 428 |
| RsaNI | GTAC | 3 cut(s) | 35, 271, 427 |
| SacI | GAGCTC | 2 cut(s) | 11, 186 |
| SaqAI | TTAA | 3 cut(s) | 383, 468, 587 |
| Sau3AI | GATC | 2 cut(s) | 175, 636 |
| ScrFI | CCNGG | 2 cut(s) | 83, 261 |
| SduI | GDGCHC | 2 cut(s) | 11, 186 |
| SfaNI | GCATC | 1 cut(s) | 451 |
| Sfr274I | CTCGAG | 1 cut(s) | 179 |
| SlaI | CTCGAG | 1 cut(s) | 179 |
| SmlI | CTYRAG | 4 cut(s) | 179, 266, 382, 467 |
| SmoI | CTYRAG | 4 cut(s) | 179, 266, 382, 467 |
| Sse9I | AATT | 3 cut(s) | 127, 601, 790 |
| SsiI | CCGC | 1 cut(s) | 535 |
| SspMI | CTAG | 2 cut(s) | 411, 680 |
| SstI | GAGCTC | 2 cut(s) | 11, 186 |
| StyD4I | CCNGG | 2 cut(s) | 81, 259 |
| StyI | CCWWGG | 1 cut(s) | 205 |
| TaaI | ACNGT | 2 cut(s) | 140, 456 |
| TaiI | ACGT | 1 cut(s) | 478 |
| TaqI | TCGA | 2 cut(s) | 57, 180 |
| TasI | AATT | 3 cut(s) | 127, 601, 790 |
| TfiI | GAWTC | 4 cut(s) | 54, 407, 531, 717 |
| Tru1I | TTAA | 3 cut(s) | 383, 468, 587 |
| Tru9I | TTAA | 3 cut(s) | 383, 468, 587 |
| TscAI | CASTG | 2 cut(s) | 328, 527 |
| TseFI | GTSAC | 1 cut(s) | 212 |
| Tsp45I | GTSAC | 1 cut(s) | 212 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| TspGWI | ACGGA | 1 cut(s) | 227 |
| TspRI | CASTG | 2 cut(s) | 328, 527 |
| Vha464I | CTTAAG | 2 cut(s) | 382, 467 |
| XceI | RCATGY | 1 cut(s) | 580 |
| XhoI | CTCGAG | 1 cut(s) | 179 |
| XspI | CTAG | 2 cut(s) | 411, 680 |