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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 35, 48 |
| AatII | GACGTC | 1 cut(s) | 33 |
| Acc36I | ACCTGC | 1 cut(s) | 372 |
| AccB1I | GGYRCC | 1 cut(s) | 1176 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1121 |
| AccII | CGCG | 2 cut(s) | 19, 213 |
| AciI | CCGC | 6 cut(s) | 14, 213, 227, 404, 407, 720 |
| AclWI | GGATC | 7 cut(s) | 315, 328, 339, 515, 707, 793, 1043 |
| AcoI | YGGCCR | 1 cut(s) | 224 |
| AcsI | RAATTY | 2 cut(s) | 536, 763 |
| AcuI | CTGAAG | 2 cut(s) | 813, 1175 |
| AcvI | CACGTG | 2 cut(s) | 1061, 1079 |
| AcyI | GRCGYC | 1 cut(s) | 30 |
| AdeI | CACNNNGTG | 1 cut(s) | 1079 |
| AfaI | GTAC | 3 cut(s) | 312, 569, 834 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 307, 501, 577, 1121 |
| AgsI | TTSAA | 4 cut(s) | 59, 730, 892, 946 |
| AjiI | CACGTC | 2 cut(s) | 758, 1043 |
| AjnI | CCWGG | 1 cut(s) | 304 |
| Alw26I | GTCTC | 1 cut(s) | 694 |
| AlwI | GGATC | 7 cut(s) | 315, 328, 339, 515, 707, 793, 1043 |
| Ama87I | CYCGRG | 2 cut(s) | 158, 983 |
| AoxI | GGCC | 5 cut(s) | 224, 476, 490, 1108, 1143 |
| ApaI | GGGCCC | 1 cut(s) | 494 |
| ApeKI | GCWGC | 2 cut(s) | 112, 245 |
| ApoI | RAATTY | 2 cut(s) | 536, 763 |
| AspLEI | GCGC | 3 cut(s) | 19, 426, 747 |
| AspS9I | GGNCC | 6 cut(s) | 476, 490, 491, 659, 1108, 1144 |
| AsuHPI | GGTGA | 3 cut(s) | 407, 685, 734 |
| AsuNHI | GCTAGC | 1 cut(s) | 439 |
| AvaI | CYCGRG | 2 cut(s) | 158, 983 |
| AvaII | GGWCC | 1 cut(s) | 659 |
| BaeGI | GKGCMC | 2 cut(s) | 494, 1179 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 551, 584 |
| BamHI | GGATCC | 1 cut(s) | 320 |
| BanI | GGYRCC | 1 cut(s) | 1176 |
| BanII | GRGCYC | 2 cut(s) | 159, 494 |
| BbrPI | CACGTG | 2 cut(s) | 1061, 1079 |
| BbsI | GAAGAC | 1 cut(s) | 812 |
| BbvI | GCAGC | 2 cut(s) | 99, 232 |
| BccI | CCATC | 4 cut(s) | 426, 508, 635, 1126 |
| BceAI | ACGGC | 2 cut(s) | 138, 477 |
| BciT130I | CCWGG | 1 cut(s) | 306 |
| BclI | TGATCA | 2 cut(s) | 202, 900 |
| BcoDI | GTCTC | 1 cut(s) | 694 |
| BfaI | CTAG | 6 cut(s) | 264, 440, 510, 717, 842, 1148 |
| BfoI | RGCGCY | 1 cut(s) | 427 |
| BfuAI | ACCTGC | 1 cut(s) | 372 |
| BisI | GCNGC | 5 cut(s) | 15, 113, 227, 246, 405 |
| BlsI | GCNGC | 5 cut(s) | 16, 114, 228, 247, 406 |
| BmcAI | AGTACT | 1 cut(s) | 834 |
| Bme1390I | CCNGG | 1 cut(s) | 306 |
| Bme18I | GGWCC | 1 cut(s) | 659 |
| BmeT110I | CYCGRG | 2 cut(s) | 158, 983 |
| BmgBI | CACGTC | 2 cut(s) | 758, 1043 |
| BmgT120I | GGNCC | 6 cut(s) | 476, 490, 491, 659, 1108, 1144 |
| BmiI | GGNNCC | 4 cut(s) | 322, 492, 493, 1178 |
| BmrFI | CCNGG | 1 cut(s) | 306 |
| BmsI | GCATC | 1 cut(s) | 124 |
| BmtI | GCTAGC | 1 cut(s) | 443 |
| BpiI | GAAGAC | 1 cut(s) | 812 |
| BpmI | CTGGAG | 1 cut(s) | 881 |
| BpuEI | CTTGAG | 1 cut(s) | 584 |
| BsaAI | YACGTR | 2 cut(s) | 1061, 1079 |
| BsaBI | GATNNNNATC | 2 cut(s) | 330, 525 |
| BsaHI | GRCGYC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 984 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 307, 501, 577, 1121 |
| Bse118I | RCCGGY | 2 cut(s) | 115, 229 |
| Bse1I | ACTGG | 2 cut(s) | 850, 915 |
| Bse3DI | GCAATG | 1 cut(s) | 618 |
| Bse8I | GATNNNNATC | 2 cut(s) | 330, 525 |
| BseBI | CCWGG | 1 cut(s) | 306 |
| BseDI | CCNNGG | 2 cut(s) | 305, 984 |
| BseGI | GGATG | 4 cut(s) | 437, 519, 742, 1094 |
| BseJI | GATNNNNATC | 2 cut(s) | 330, 525 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 307, 501, 577, 1121 |
| BseMI | GCAATG | 1 cut(s) | 618 |
| BseMII | CTCAG | 2 cut(s) | 567, 689 |
| BseNI | ACTGG | 2 cut(s) | 850, 915 |
| BseSI | GKGCMC | 2 cut(s) | 494, 1179 |
| BseXI | GCAGC | 2 cut(s) | 99, 232 |
| Bsh1236I | CGCG | 2 cut(s) | 19, 213 |
| Bsh1285I | CGRYCG | 1 cut(s) | 82 |
| BshFI | GGCC | 5 cut(s) | 226, 478, 492, 1110, 1145 |
| BshNI | GGYRCC | 1 cut(s) | 1176 |
| BsiEI | CGRYCG | 1 cut(s) | 82 |
| BsiHKCI | CYCGRG | 2 cut(s) | 158, 983 |
| BsiSI | CCGG | 5 cut(s) | 11, 69, 116, 230, 369 |
| BslFI | GGGAC | 2 cut(s) | 472, 982 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 307, 501, 577, 1121 |
| BsmAI | GTCTC | 1 cut(s) | 694 |
| BsmBI | CGTCTC | 1 cut(s) | 694 |
| BsmFI | GGGAC | 2 cut(s) | 472, 982 |
| BsnI | GGCC | 5 cut(s) | 226, 478, 492, 1110, 1145 |
| BsoBI | CYCGRG | 2 cut(s) | 158, 983 |
| Bsp120I | GGGCCC | 1 cut(s) | 490 |
| Bsp1286I | GDGCHC | 3 cut(s) | 159, 494, 1179 |
| BspACI | CCGC | 6 cut(s) | 14, 213, 227, 404, 407, 720 |
| BspANI | GGCC | 5 cut(s) | 226, 478, 492, 1110, 1145 |
| BspCNI | CTCAG | 2 cut(s) | 566, 690 |
| BspFNI | CGCG | 2 cut(s) | 19, 213 |
| BspLI | GGNNCC | 4 cut(s) | 322, 492, 493, 1178 |
| BspMI | ACCTGC | 1 cut(s) | 372 |
| BspOI | GCTAGC | 1 cut(s) | 443 |
| BspPI | GGATC | 7 cut(s) | 315, 328, 339, 515, 707, 793, 1043 |
| BspT107I | GGYRCC | 1 cut(s) | 1176 |
| BsrDI | GCAATG | 1 cut(s) | 618 |
| BsrFI | RCCGGY | 2 cut(s) | 115, 229 |
| BsrI | ACTGG | 2 cut(s) | 850, 915 |
| BssAI | RCCGGY | 2 cut(s) | 115, 229 |
| BssECI | CCNNGG | 2 cut(s) | 305, 984 |
| BssNI | GRCGYC | 1 cut(s) | 30 |
| Bst2UI | CCWGG | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 1 cut(s) | 663 |
| BstACI | GRCGYC | 1 cut(s) | 30 |
| BstBAI | YACGTR | 2 cut(s) | 1061, 1079 |
| BstC8I | GCNNGC | 3 cut(s) | 117, 441, 1143 |
| BstDEI | CTNAG | 2 cut(s) | 553, 698 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 499 |
| BstF5I | GGATG | 4 cut(s) | 437, 519, 742, 1094 |
| BstFNI | CGCG | 2 cut(s) | 19, 213 |
| BstH2I | RGCGCY | 1 cut(s) | 427 |
| BstHHI | GCGC | 3 cut(s) | 19, 426, 747 |
| BstMAI | GTCTC | 1 cut(s) | 694 |
| BstMCI | CGRYCG | 1 cut(s) | 82 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 449, 515 |
| BstNI | CCWGG | 1 cut(s) | 306 |
| BstSCI | CCNGG | 1 cut(s) | 304 |
| BstSLI | GKGCMC | 2 cut(s) | 494, 1179 |
| BstUI | CGCG | 2 cut(s) | 19, 213 |
| BstV1I | GCAGC | 2 cut(s) | 99, 232 |
| BstV2I | GAAGAC | 1 cut(s) | 812 |
| BstX2I | RGATCY | 2 cut(s) | 320, 331 |
| BstYI | RGATCY | 2 cut(s) | 320, 331 |
| BsuRI | GGCC | 5 cut(s) | 226, 478, 492, 1110, 1145 |
| BtrI | CACGTC | 2 cut(s) | 758, 1043 |
| BtsCI | GGATG | 4 cut(s) | 437, 519, 742, 1094 |
| BtsI | GCAGTG | 1 cut(s) | 98 |
| BtsIMutI | CAGTG | 2 cut(s) | 98, 639 |
| BveI | ACCTGC | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 3 cut(s) | 117, 441, 1143 |
| CfoI | GCGC | 3 cut(s) | 19, 426, 747 |
| Cfr10I | RCCGGY | 2 cut(s) | 115, 229 |
| Cfr13I | GGNCC | 6 cut(s) | 476, 490, 491, 659, 1108, 1144 |
| CseI | GACGC | 2 cut(s) | 8, 219 |
| Csp6I | GTAC | 3 cut(s) | 311, 568, 833 |
| CviAII | CATG | 3 cut(s) | 273, 392, 1156 |
| CviQI | GTAC | 3 cut(s) | 311, 568, 833 |
| DdeI | CTNAG | 2 cut(s) | 553, 698 |
| DraIII | CACNNNGTG | 1 cut(s) | 1079 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 35, 48 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 35, 48 |
| EaeI | YGGCCR | 1 cut(s) | 224 |
| Eco24I | GRGCYC | 2 cut(s) | 159, 494 |
| Eco47I | GGWCC | 1 cut(s) | 659 |
| Eco57I | CTGAAG | 2 cut(s) | 813, 1175 |
| Eco72I | CACGTG | 2 cut(s) | 1061, 1079 |
| Eco88I | CYCGRG | 2 cut(s) | 158, 983 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 499 |
| EcoO109I | RGGNCCY | 1 cut(s) | 491 |
| EcoRII | CCWGG | 1 cut(s) | 304 |
| EcoT38I | GRGCYC | 2 cut(s) | 159, 494 |
| Esp3I | CGTCTC | 1 cut(s) | 694 |
| FaeI | CATG | 3 cut(s) | 276, 395, 1159 |
| FaqI | GGGAC | 2 cut(s) | 472, 982 |
| FatI | CATG | 3 cut(s) | 272, 391, 1155 |
| FauI | CCCGC | 1 cut(s) | 206 |
| FbaI | TGATCA | 2 cut(s) | 202, 900 |
| Fnu4HI | GCNGC | 5 cut(s) | 15, 113, 227, 246, 405 |
| FokI | GGATG | 4 cut(s) | 444, 526, 749, 1101 |
| FriOI | GRGCYC | 2 cut(s) | 159, 494 |
| Fsp4HI | GCNGC | 5 cut(s) | 15, 113, 227, 246, 405 |
| FspBI | CTAG | 6 cut(s) | 264, 440, 510, 717, 842, 1148 |
| GlaI | GCGC | 3 cut(s) | 18, 425, 746 |
| GluI | GCNGC | 5 cut(s) | 15, 113, 227, 246, 405 |
| GsuI | CTGGAG | 1 cut(s) | 881 |
| HaeII | RGCGCY | 1 cut(s) | 427 |
| HaeIII | GGCC | 5 cut(s) | 226, 478, 492, 1110, 1145 |
| HapII | CCGG | 5 cut(s) | 11, 69, 116, 230, 369 |
| HgaI | GACGC | 2 cut(s) | 8, 219 |
| HhaI | GCGC | 3 cut(s) | 19, 426, 747 |
| Hin1I | GRCGYC | 1 cut(s) | 30 |
| Hin1II | CATG | 3 cut(s) | 276, 395, 1159 |
| Hin6I | GCGC | 3 cut(s) | 17, 424, 745 |
| HinP1I | GCGC | 3 cut(s) | 17, 424, 745 |
| HincII | GTYRAC | 1 cut(s) | 294 |
| HindII | GTYRAC | 1 cut(s) | 294 |
| HinfI | GANTC | 4 cut(s) | 269, 551, 808, 879 |
| HpaII | CCGG | 5 cut(s) | 11, 69, 116, 230, 369 |
| HphI | GGTGA | 3 cut(s) | 407, 685, 734 |
| Hpy166II | GTNNAC | 1 cut(s) | 294 |
| Hpy188I | TCNGA | 8 cut(s) | 41, 149, 283, 325, 556, 586, 667, 699 |
| Hpy188III | TCNNGA | 3 cut(s) | 318, 802, 983 |
| Hpy8I | GTNNAC | 1 cut(s) | 294 |
| Hpy99I | CGWCG | 3 cut(s) | 35, 38, 41 |
| HpyAV | CCTTC | 4 cut(s) | 454, 551, 898, 1199 |
| HpyCH4III | ACNGT | 1 cut(s) | 663 |
| HpyCH4IV | ACGT | 5 cut(s) | 30, 757, 1042, 1060, 1078 |
| HpyCH4V | TGCA | 6 cut(s) | 137, 248, 381, 452, 1073, 1170 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 449, 515 |
| HpyF3I | CTNAG | 2 cut(s) | 553, 698 |
| HpySE526I | ACGT | 5 cut(s) | 30, 757, 1042, 1060, 1078 |
| Hsp92I | GRCGYC | 1 cut(s) | 30 |
| Hsp92II | CATG | 3 cut(s) | 276, 395, 1159 |
| HspAI | GCGC | 3 cut(s) | 17, 424, 745 |
| KroI | GCCGGC | 1 cut(s) | 115 |
| KroNI | GCCGGC | 1 cut(s) | 117 |
| Ksp22I | TGATCA | 2 cut(s) | 202, 900 |
| Lsp1109I | GCAGC | 2 cut(s) | 99, 232 |
| LweI | GCATC | 1 cut(s) | 124 |
| MaeI | CTAG | 6 cut(s) | 264, 440, 510, 717, 842, 1148 |
| MaeII | ACGT | 5 cut(s) | 30, 757, 1042, 1060, 1078 |
| MaeIII | GTNAC | 3 cut(s) | 26, 604, 722 |
| MboII | GAAGA | 2 cut(s) | 800, 817 |
| MflI | RGATCY | 2 cut(s) | 320, 331 |
| MhlI | GDGCHC | 3 cut(s) | 159, 494, 1179 |
| MluCI | AATT | 5 cut(s) | 465, 536, 763, 991, 1216 |
| MlyI | GAGTC | 2 cut(s) | 545, 802 |
| MmeI | TCCRAC | 2 cut(s) | 19, 79 |
| MnlI | CCTC | 9 cut(s) | 65, 81, 95, 231, 495, 918, 928, 979, 1121 |
| MroNI | GCCGGC | 1 cut(s) | 115 |
| MseI | TTAA | 2 cut(s) | 689, 1196 |
| MspI | CCGG | 5 cut(s) | 11, 69, 116, 230, 369 |
| MspR9I | CCNGG | 1 cut(s) | 306 |
| MvaI | CCWGG | 1 cut(s) | 306 |
| MvnI | CGCG | 2 cut(s) | 19, 213 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 449, 515 |
| NaeI | GCCGGC | 1 cut(s) | 117 |
| NgoMIV | GCCGGC | 1 cut(s) | 115 |
| NheI | GCTAGC | 1 cut(s) | 439 |
| NlaIII | CATG | 3 cut(s) | 276, 395, 1159 |
| NlaIV | GGNNCC | 4 cut(s) | 322, 492, 493, 1178 |
| NmuCI | GTSAC | 3 cut(s) | 26, 604, 722 |
| PdiI | GCCGGC | 1 cut(s) | 117 |
| PfeI | GAWTC | 2 cut(s) | 269, 879 |
| PflFI | GACNNNGTC | 1 cut(s) | 32 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1121 |
| PkrI | GCNGC | 5 cut(s) | 16, 114, 228, 247, 406 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PleI | GAGTC | 2 cut(s) | 545, 802 |
| PmaCI | CACGTG | 2 cut(s) | 1061, 1079 |
| PmlI | CACGTG | 2 cut(s) | 1061, 1079 |
| PpsI | GAGTC | 2 cut(s) | 545, 802 |
| Ppu21I | YACGTR | 2 cut(s) | 1061, 1079 |
| Psp6I | CCWGG | 1 cut(s) | 304 |
| PspCI | CACGTG | 2 cut(s) | 1061, 1079 |
| PspGI | CCWGG | 1 cut(s) | 304 |
| PspN4I | GGNNCC | 4 cut(s) | 322, 492, 493, 1178 |
| PspOMI | GGGCCC | 1 cut(s) | 490 |
| PspPI | GGNCC | 6 cut(s) | 476, 490, 491, 659, 1108, 1144 |
| PsuI | RGATCY | 2 cut(s) | 320, 331 |
| PsyI | GACNNNGTC | 1 cut(s) | 32 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| RsaI | GTAC | 3 cut(s) | 312, 569, 834 |
| RsaNI | GTAC | 3 cut(s) | 311, 568, 833 |
| SaqAI | TTAA | 2 cut(s) | 689, 1196 |
| SatI | GCNGC | 5 cut(s) | 15, 113, 227, 246, 405 |
| Sau96I | GGNCC | 6 cut(s) | 476, 490, 491, 659, 1108, 1144 |
| ScaI | AGTACT | 1 cut(s) | 834 |
| SchI | GAGTC | 2 cut(s) | 545, 802 |
| ScrFI | CCNGG | 1 cut(s) | 306 |
| SduI | GDGCHC | 3 cut(s) | 159, 494, 1179 |
| SfaNI | GCATC | 1 cut(s) | 124 |
| SinI | GGWCC | 1 cut(s) | 659 |
| SmlI | CTYRAG | 1 cut(s) | 563 |
| SmoI | CTYRAG | 1 cut(s) | 563 |
| Sse9I | AATT | 5 cut(s) | 465, 536, 763, 991, 1216 |
| SsiI | CCGC | 6 cut(s) | 14, 213, 227, 404, 407, 720 |
| SspMI | CTAG | 6 cut(s) | 264, 440, 510, 717, 842, 1148 |
| StyD4I | CCNGG | 1 cut(s) | 304 |
| TaaI | ACNGT | 1 cut(s) | 663 |
| TaiI | ACGT | 5 cut(s) | 33, 760, 1045, 1063, 1081 |
| TaqI | TCGA | 4 cut(s) | 78, 82, 413, 529 |
| TasI | AATT | 5 cut(s) | 465, 536, 763, 991, 1216 |
| TatI | WGTACW | 1 cut(s) | 832 |
| TauI | GCSGC | 3 cut(s) | 17, 229, 407 |
| TfiI | GAWTC | 2 cut(s) | 269, 879 |
| Tru1I | TTAA | 2 cut(s) | 689, 1196 |
| Tru9I | TTAA | 2 cut(s) | 689, 1196 |
| TscAI | CASTG | 2 cut(s) | 98, 646 |
| TseFI | GTSAC | 3 cut(s) | 26, 604, 722 |
| TseI | GCWGC | 2 cut(s) | 112, 245 |
| Tsp45I | GTSAC | 3 cut(s) | 26, 604, 722 |
| TspDTI | ATGAA | 1 cut(s) | 261 |
| TspRI | CASTG | 2 cut(s) | 98, 646 |
| Tth111I | GACNNNGTC | 1 cut(s) | 32 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1121 |
| VpaK11BI | GGWCC | 1 cut(s) | 659 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 499 |
| XapI | RAATTY | 2 cut(s) | 536, 763 |
| XspI | CTAG | 6 cut(s) | 264, 440, 510, 717, 842, 1148 |
| ZraI | GACGTC | 1 cut(s) | 31 |
| ZrmI | AGTACT | 1 cut(s) | 834 |