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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 230 |
| AciI | CCGC | 1 cut(s) | 230 |
| AclWI | GGATC | 2 cut(s) | 258, 450 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcuI | CTGAAG | 1 cut(s) | 465 |
| AcvI | CACGTG | 1 cut(s) | 18 |
| AfaI | GTAC | 1 cut(s) | 477 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 320, 470, 571 |
| AflII | CTTAAG | 1 cut(s) | 516 |
| AgsI | TTSAA | 1 cut(s) | 488 |
| AluBI | AGCT | 4 cut(s) | 112, 129, 148, 210 |
| AluI | AGCT | 4 cut(s) | 112, 129, 148, 210 |
| Alw26I | GTCTC | 2 cut(s) | 125, 168 |
| AlwI | GGATC | 2 cut(s) | 258, 450 |
| ApeKI | GCWGC | 1 cut(s) | 148 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 146, 178 |
| AspS9I | GGNCC | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 3 cut(s) | 192, 428, 536 |
| AvaII | GGWCC | 1 cut(s) | 402 |
| BauI | CACGAG | 2 cut(s) | 4, 130 |
| BbrPI | CACGTG | 1 cut(s) | 18 |
| BbvI | GCAGC | 1 cut(s) | 135 |
| BccI | CCATC | 3 cut(s) | 149, 378, 393 |
| BclI | TGATCA | 1 cut(s) | 235 |
| BcoDI | GTCTC | 2 cut(s) | 125, 168 |
| BfaI | CTAG | 1 cut(s) | 460 |
| BfrI | CTTAAG | 1 cut(s) | 516 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 348 |
| BisI | GCNGC | 1 cut(s) | 149 |
| BlsI | GCNGC | 1 cut(s) | 150 |
| Bme18I | GGWCC | 1 cut(s) | 402 |
| BmgT120I | GGNCC | 1 cut(s) | 402 |
| BmrI | ACTGGG | 1 cut(s) | 479 |
| BmsI | GCATC | 2 cut(s) | 71, 500 |
| BmuI | ACTGGG | 1 cut(s) | 479 |
| BpuEI | CTTGAG | 1 cut(s) | 327 |
| BsaAI | YACGTR | 1 cut(s) | 18 |
| BsaI | GGTCTC | 1 cut(s) | 168 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 320, 470, 571 |
| Bse118I | RCCGGY | 1 cut(s) | 159 |
| Bse1I | ACTGG | 1 cut(s) | 474 |
| BseGI | GGATG | 4 cut(s) | 53, 86, 238, 515 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 320, 470, 571 |
| BseMII | CTCAG | 3 cut(s) | 127, 310, 432 |
| BseNI | ACTGG | 1 cut(s) | 474 |
| BseXI | GCAGC | 1 cut(s) | 135 |
| Bsh1236I | CGCG | 1 cut(s) | 230 |
| BsiSI | CCGG | 1 cut(s) | 160 |
| BslFI | GGGAC | 2 cut(s) | 75, 535 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 320, 470, 571 |
| BsmAI | GTCTC | 2 cut(s) | 125, 168 |
| BsmFI | GGGAC | 2 cut(s) | 75, 535 |
| Bso31I | GGTCTC | 1 cut(s) | 168 |
| Bsp143I | GATC | 3 cut(s) | 235, 263, 455 |
| BspACI | CCGC | 1 cut(s) | 230 |
| BspCNI | CTCAG | 3 cut(s) | 126, 309, 433 |
| BspFNI | CGCG | 1 cut(s) | 230 |
| BspPI | GGATC | 2 cut(s) | 258, 450 |
| BspTI | CTTAAG | 1 cut(s) | 516 |
| BspTNI | GGTCTC | 1 cut(s) | 168 |
| BsrFI | RCCGGY | 1 cut(s) | 159 |
| BsrI | ACTGG | 1 cut(s) | 474 |
| BssAI | RCCGGY | 1 cut(s) | 159 |
| BssMI | GATC | 3 cut(s) | 235, 263, 455 |
| BssSI | CACGAG | 2 cut(s) | 4, 130 |
| Bst2BI | CACGAG | 2 cut(s) | 4, 130 |
| Bst4CI | ACNGT | 3 cut(s) | 318, 406, 505 |
| BstAFI | CTTAAG | 1 cut(s) | 516 |
| BstBAI | YACGTR | 1 cut(s) | 18 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstDEI | CTNAG | 3 cut(s) | 113, 296, 441 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 569 |
| BstF5I | GGATG | 4 cut(s) | 53, 86, 238, 515 |
| BstFNI | CGCG | 1 cut(s) | 230 |
| BstKTI | GATC | 3 cut(s) | 238, 266, 458 |
| BstMAI | GTCTC | 2 cut(s) | 125, 168 |
| BstMBI | GATC | 3 cut(s) | 235, 263, 455 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 348 |
| BstUI | CGCG | 1 cut(s) | 230 |
| BstV1I | GCAGC | 1 cut(s) | 135 |
| BtsCI | GGATG | 4 cut(s) | 53, 86, 238, 515 |
| BtsIMutI | CAGTG | 2 cut(s) | 382, 467 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| Cfr10I | RCCGGY | 1 cut(s) | 159 |
| Cfr13I | GGNCC | 1 cut(s) | 402 |
| Csp6I | GTAC | 1 cut(s) | 476 |
| CviAII | CATG | 2 cut(s) | 257, 540 |
| CviJI | RGCY | 7 cut(s) | 36, 112, 129, 148, 159, 210, 463 |
| CviKI_1 | RGCY | 7 cut(s) | 36, 112, 129, 148, 159, 210, 463 |
| CviQI | GTAC | 1 cut(s) | 476 |
| DdeI | CTNAG | 3 cut(s) | 113, 296, 441 |
| DpnI | GATC | 3 cut(s) | 237, 265, 457 |
| DpnII | GATC | 3 cut(s) | 235, 263, 455 |
| Eco31I | GGTCTC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 1 cut(s) | 402 |
| Eco57I | CTGAAG | 1 cut(s) | 465 |
| Eco72I | CACGTG | 1 cut(s) | 18 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 569 |
| FaeI | CATG | 2 cut(s) | 260, 543 |
| FaiI | YATR | 5 cut(s) | 258, 348, 361, 451, 541 |
| FaqI | GGGAC | 2 cut(s) | 75, 535 |
| FatI | CATG | 2 cut(s) | 256, 539 |
| FbaI | TGATCA | 1 cut(s) | 235 |
| Fnu4HI | GCNGC | 1 cut(s) | 149 |
| FokI | GGATG | 4 cut(s) | 60, 93, 245, 522 |
| Fsp4HI | GCNGC | 1 cut(s) | 149 |
| FspBI | CTAG | 1 cut(s) | 460 |
| GluI | GCNGC | 1 cut(s) | 149 |
| HapII | CCGG | 1 cut(s) | 160 |
| Hin1II | CATG | 2 cut(s) | 260, 543 |
| HinfI | GANTC | 2 cut(s) | 197, 294 |
| HpaII | CCGG | 1 cut(s) | 160 |
| HphI | GGTGA | 3 cut(s) | 192, 428, 536 |
| Hpy188I | TCNGA | 7 cut(s) | 116, 214, 299, 329, 410, 442, 571 |
| Hpy188III | TCNNGA | 1 cut(s) | 132 |
| Hpy99I | CGWCG | 1 cut(s) | 69 |
| HpyAV | CCTTC | 2 cut(s) | 294, 489 |
| HpyCH4III | ACNGT | 3 cut(s) | 318, 406, 505 |
| HpyCH4IV | ACGT | 2 cut(s) | 17, 524 |
| HpyCH4V | TGCA | 1 cut(s) | 84 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 348 |
| HpyF3I | CTNAG | 3 cut(s) | 113, 296, 441 |
| HpySE526I | ACGT | 2 cut(s) | 17, 524 |
| Hsp92II | CATG | 2 cut(s) | 260, 543 |
| Ksp22I | TGATCA | 1 cut(s) | 235 |
| Kzo9I | GATC | 3 cut(s) | 235, 263, 455 |
| LpnPI | CCDG | 5 cut(s) | 67, 173, 289, 455, 568 |
| Lsp1109I | GCAGC | 1 cut(s) | 135 |
| LweI | GCATC | 2 cut(s) | 71, 500 |
| MaeI | CTAG | 1 cut(s) | 460 |
| MaeII | ACGT | 2 cut(s) | 17, 524 |
| MaeIII | GTNAC | 2 cut(s) | 13, 542 |
| MalI | GATC | 3 cut(s) | 237, 265, 457 |
| MboI | GATC | 3 cut(s) | 235, 263, 455 |
| MboII | GAAGA | 4 cut(s) | 22, 107, 147, 500 |
| MluCI | AATT | 3 cut(s) | 279, 558, 575 |
| MlyI | GAGTC | 1 cut(s) | 288 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| MnlI | CCTC | 5 cut(s) | 70, 112, 182, 436, 565 |
| MseI | TTAA | 3 cut(s) | 432, 517, 578 |
| MslI | CAYNNNNRTG | 1 cut(s) | 231 |
| MspCI | CTTAAG | 1 cut(s) | 516 |
| MspI | CCGG | 1 cut(s) | 160 |
| MvnI | CGCG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 348 |
| NdeII | GATC | 3 cut(s) | 235, 263, 455 |
| NlaIII | CATG | 2 cut(s) | 260, 543 |
| NmuCI | GTSAC | 2 cut(s) | 13, 542 |
| PfeI | GAWTC | 1 cut(s) | 197 |
| PkrI | GCNGC | 1 cut(s) | 150 |
| PleI | GAGTC | 1 cut(s) | 288 |
| PmaCI | CACGTG | 1 cut(s) | 18 |
| PmlI | CACGTG | 1 cut(s) | 18 |
| PpsI | GAGTC | 1 cut(s) | 288 |
| Ppu21I | YACGTR | 1 cut(s) | 18 |
| PspCI | CACGTG | 1 cut(s) | 18 |
| PspPI | GGNCC | 1 cut(s) | 402 |
| RsaI | GTAC | 1 cut(s) | 477 |
| RsaNI | GTAC | 1 cut(s) | 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 231 |
| SaqAI | TTAA | 3 cut(s) | 432, 517, 578 |
| SatI | GCNGC | 1 cut(s) | 149 |
| Sau3AI | GATC | 3 cut(s) | 235, 263, 455 |
| Sau96I | GGNCC | 1 cut(s) | 402 |
| SchI | GAGTC | 1 cut(s) | 288 |
| SfaNI | GCATC | 2 cut(s) | 71, 500 |
| SinI | GGWCC | 1 cut(s) | 402 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 231 |
| SmlI | CTYRAG | 2 cut(s) | 306, 516 |
| SmoI | CTYRAG | 2 cut(s) | 306, 516 |
| Sse9I | AATT | 3 cut(s) | 279, 558, 575 |
| SsiI | CCGC | 1 cut(s) | 230 |
| SspMI | CTAG | 1 cut(s) | 460 |
| TaaI | ACNGT | 3 cut(s) | 318, 406, 505 |
| TaiI | ACGT | 2 cut(s) | 20, 527 |
| TasI | AATT | 3 cut(s) | 279, 558, 575 |
| TfiI | GAWTC | 1 cut(s) | 197 |
| Tru1I | TTAA | 3 cut(s) | 432, 517, 578 |
| Tru9I | TTAA | 3 cut(s) | 432, 517, 578 |
| TscAI | CASTG | 2 cut(s) | 389, 474 |
| TseFI | GTSAC | 2 cut(s) | 13, 542 |
| TseI | GCWGC | 1 cut(s) | 148 |
| Tsp45I | GTSAC | 2 cut(s) | 13, 542 |
| TspDTI | ATGAA | 2 cut(s) | 64, 528 |
| TspGWI | ACGGA | 1 cut(s) | 107 |
| TspRI | CASTG | 2 cut(s) | 389, 474 |
| Vha464I | CTTAAG | 1 cut(s) | 516 |
| VpaK11BI | GGWCC | 1 cut(s) | 402 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 569 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XspI | CTAG | 1 cut(s) | 460 |