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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 406 |
| Acc36I | ACCTGC | 2 cut(s) | 406, 568 |
| AccB1I | GGYRCC | 1 cut(s) | 14 |
| AccII | CGCG | 2 cut(s) | 136, 170 |
| AciI | CCGC | 6 cut(s) | 18, 42, 134, 200, 474, 904 |
| AclWI | GGATC | 5 cut(s) | 14, 323, 578, 770, 1000 |
| AcoI | YGGCCR | 1 cut(s) | 50 |
| AcsI | RAATTY | 3 cut(s) | 599, 970, 1185 |
| AcuI | CTGAAG | 2 cut(s) | 785, 1020 |
| AfaI | GTAC | 2 cut(s) | 370, 632 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 59, 640, 790, 891 |
| AflII | CTTAAG | 1 cut(s) | 836 |
| AflIII | ACRYGT | 2 cut(s) | 254, 945 |
| AgsI | TTSAA | 4 cut(s) | 365, 808, 937, 1099 |
| AjiI | CACGTC | 2 cut(s) | 257, 965 |
| AleI | CACNNNNGTG | 1 cut(s) | 26 |
| AluBI | AGCT | 1 cut(s) | 1105 |
| AluI | AGCT | 1 cut(s) | 1105 |
| Alw26I | GTCTC | 2 cut(s) | 271, 1126 |
| AlwI | GGATC | 5 cut(s) | 14, 323, 578, 770, 1000 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 70 |
| AoxI | GGCC | 3 cut(s) | 50, 548, 1166 |
| ApoI | RAATTY | 3 cut(s) | 599, 970, 1185 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 798 |
| AspLEI | GCGC | 6 cut(s) | 130, 138, 172, 252, 569, 954 |
| AspS9I | GGNCC | 4 cut(s) | 261, 549, 722, 1167 |
| AsuHPI | GGTGA | 2 cut(s) | 334, 748 |
| AvaII | GGWCC | 2 cut(s) | 261, 722 |
| AxyI | CCTNAGG | 1 cut(s) | 57 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 614, 647 |
| BamHI | GGATCC | 1 cut(s) | 6 |
| BanI | GGYRCC | 1 cut(s) | 14 |
| BanII | GRGCYC | 1 cut(s) | 460 |
| BbsI | GAAGAC | 3 cut(s) | 506, 815, 1019 |
| BccI | CCATC | 3 cut(s) | 698, 713, 733 |
| BclI | TGATCA | 1 cut(s) | 573 |
| BcoDI | GTCTC | 2 cut(s) | 271, 1126 |
| BfaI | CTAG | 4 cut(s) | 141, 155, 780, 1049 |
| BfmI | CTRYAG | 3 cut(s) | 399, 1067, 1115 |
| BfrI | CTTAAG | 1 cut(s) | 836 |
| BfuAI | ACCTGC | 2 cut(s) | 406, 568 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 668 |
| Bme18I | GGWCC | 2 cut(s) | 261, 722 |
| BmgBI | CACGTC | 2 cut(s) | 257, 965 |
| BmgT120I | GGNCC | 4 cut(s) | 261, 549, 722, 1167 |
| BmiI | GGNNCC | 2 cut(s) | 8, 16 |
| BmsI | GCATC | 2 cut(s) | 436, 820 |
| BpiI | GAAGAC | 3 cut(s) | 506, 815, 1019 |
| BpmI | CTGGAG | 3 cut(s) | 257, 424, 452 |
| BpuEI | CTTGAG | 1 cut(s) | 647 |
| BsaBI | GATNNNNATC | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 59, 640, 790, 891 |
| Bse1I | ACTGG | 1 cut(s) | 1057 |
| Bse21I | CCTNAGG | 1 cut(s) | 57 |
| Bse8I | GATNNNNATC | 1 cut(s) | 426 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseGI | GGATG | 2 cut(s) | 516, 835 |
| BseJI | GATNNNNATC | 1 cut(s) | 426 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 59, 640, 790, 891 |
| BseMII | CTCAG | 4 cut(s) | 71, 630, 752, 1182 |
| BseNI | ACTGG | 1 cut(s) | 1057 |
| BseYI | CCCAGC | 6 cut(s) | 124, 240, 316, 332, 459, 789 |
| Bsh1236I | CGCG | 2 cut(s) | 136, 170 |
| Bsh1285I | CGRYCG | 1 cut(s) | 305 |
| BshFI | GGCC | 3 cut(s) | 52, 550, 1168 |
| BshNI | GGYRCC | 1 cut(s) | 14 |
| BsiEI | CGRYCG | 1 cut(s) | 305 |
| BsiSI | CCGG | 2 cut(s) | 39, 49 |
| BslFI | GGGAC | 3 cut(s) | 75, 855, 1189 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 59, 640, 790, 891 |
| BsmAI | GTCTC | 2 cut(s) | 271, 1126 |
| BsmBI | CGTCTC | 1 cut(s) | 271 |
| BsmFI | GGGAC | 3 cut(s) | 75, 855, 1189 |
| BsnI | GGCC | 3 cut(s) | 52, 550, 1168 |
| Bsp1286I | GDGCHC | 1 cut(s) | 460 |
| Bsp143I | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| BspACI | CCGC | 6 cut(s) | 18, 42, 134, 200, 474, 904 |
| BspANI | GGCC | 3 cut(s) | 52, 550, 1168 |
| BspCNI | CTCAG | 4 cut(s) | 70, 629, 753, 1183 |
| BspFNI | CGCG | 2 cut(s) | 136, 170 |
| BspHI | TCATGA | 1 cut(s) | 859 |
| BspLI | GGNNCC | 2 cut(s) | 8, 16 |
| BspMAI | CTGCAG | 2 cut(s) | 403, 1071 |
| BspMI | ACCTGC | 2 cut(s) | 406, 568 |
| BspPI | GGATC | 5 cut(s) | 14, 323, 578, 770, 1000 |
| BspT107I | GGYRCC | 1 cut(s) | 14 |
| BspTI | CTTAAG | 1 cut(s) | 836 |
| BsrI | ACTGG | 1 cut(s) | 1057 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssMI | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| Bst4CI | ACNGT | 6 cut(s) | 25, 66, 265, 638, 825, 886 |
| Bst6I | CTCTTC | 1 cut(s) | 512 |
| BstAFI | CTTAAG | 1 cut(s) | 836 |
| BstC8I | GCNNGC | 6 cut(s) | 237, 435, 446, 474, 565, 908 |
| BstDEI | CTNAG | 4 cut(s) | 57, 616, 761, 1191 |
| BstF5I | GGATG | 2 cut(s) | 516, 835 |
| BstFNI | CGCG | 2 cut(s) | 136, 170 |
| BstHHI | GCGC | 6 cut(s) | 130, 138, 172, 252, 569, 954 |
| BstKTI | GATC | 9 cut(s) | 9, 87, 285, 305, 331, 576, 586, 778, 1008 |
| BstMAI | GTCTC | 2 cut(s) | 271, 1126 |
| BstMBI | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| BstMCI | CGRYCG | 1 cut(s) | 305 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 236, 241, 450, 469, 668 |
| BstNSI | RCATGY | 1 cut(s) | 949 |
| BstSFI | CTRYAG | 3 cut(s) | 399, 1067, 1115 |
| BstUI | CGCG | 2 cut(s) | 136, 170 |
| BstV2I | GAAGAC | 3 cut(s) | 506, 815, 1019 |
| BstX2I | RGATCY | 1 cut(s) | 6 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 6 |
| Bsu36I | CCTNAGG | 1 cut(s) | 57 |
| BsuRI | GGCC | 3 cut(s) | 52, 550, 1168 |
| BtgZI | GCGATG | 1 cut(s) | 146 |
| BtrI | CACGTC | 2 cut(s) | 257, 965 |
| BtsCI | GGATG | 2 cut(s) | 516, 835 |
| BtsI | GCAGTG | 2 cut(s) | 146, 681 |
| BtsIMutI | CAGTG | 5 cut(s) | 21, 146, 681, 702, 896 |
| BveI | ACCTGC | 2 cut(s) | 406, 568 |
| Cac8I | GCNNGC | 6 cut(s) | 237, 435, 446, 474, 565, 908 |
| CaiI | CAGNNNCTG | 1 cut(s) | 70 |
| CciI | TCATGA | 1 cut(s) | 859 |
| CfoI | GCGC | 6 cut(s) | 130, 138, 172, 252, 569, 954 |
| Cfr13I | GGNCC | 4 cut(s) | 261, 549, 722, 1167 |
| CpoI | CGGWCCG | 1 cut(s) | 261 |
| Csp6I | GTAC | 2 cut(s) | 369, 631 |
| CspI | CGGWCCG | 1 cut(s) | 261 |
| CviAII | CATG | 4 cut(s) | 577, 860, 946, 1136 |
| CviQI | GTAC | 2 cut(s) | 369, 631 |
| DdeI | CTNAG | 4 cut(s) | 57, 616, 761, 1191 |
| DpnI | GATC | 9 cut(s) | 8, 86, 284, 304, 330, 575, 585, 777, 1007 |
| DpnII | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| EaeI | YGGCCR | 1 cut(s) | 50 |
| Eam1104I | CTCTTC | 1 cut(s) | 512 |
| EarI | CTCTTC | 1 cut(s) | 512 |
| Eco24I | GRGCYC | 1 cut(s) | 460 |
| Eco47I | GGWCC | 2 cut(s) | 261, 722 |
| Eco57I | CTGAAG | 2 cut(s) | 785, 1020 |
| Eco81I | CCTNAGG | 1 cut(s) | 57 |
| EcoT38I | GRGCYC | 1 cut(s) | 460 |
| Esp3I | CGTCTC | 1 cut(s) | 271 |
| FaeI | CATG | 4 cut(s) | 580, 863, 949, 1139 |
| FaqI | GGGAC | 3 cut(s) | 75, 855, 1189 |
| FatI | CATG | 4 cut(s) | 576, 859, 945, 1135 |
| FauI | CCCGC | 2 cut(s) | 207, 481 |
| FbaI | TGATCA | 1 cut(s) | 573 |
| FokI | GGATG | 2 cut(s) | 523, 842 |
| FriOI | GRGCYC | 1 cut(s) | 460 |
| FspBI | CTAG | 4 cut(s) | 141, 155, 780, 1049 |
| GlaI | GCGC | 6 cut(s) | 129, 137, 171, 251, 568, 953 |
| GsaI | CCCAGC | 6 cut(s) | 128, 244, 320, 336, 463, 793 |
| GsuI | CTGGAG | 3 cut(s) | 257, 424, 452 |
| HaeIII | GGCC | 3 cut(s) | 52, 550, 1168 |
| HapII | CCGG | 2 cut(s) | 39, 49 |
| HhaI | GCGC | 6 cut(s) | 130, 138, 172, 252, 569, 954 |
| Hin1II | CATG | 4 cut(s) | 580, 863, 949, 1139 |
| Hin6I | GCGC | 6 cut(s) | 128, 136, 170, 250, 567, 952 |
| HinP1I | GCGC | 6 cut(s) | 128, 136, 170, 250, 567, 952 |
| HinfI | GANTC | 4 cut(s) | 97, 614, 1015, 1086 |
| HpaII | CCGG | 2 cut(s) | 39, 49 |
| HphI | GGTGA | 2 cut(s) | 334, 748 |
| Hpy188I | TCNGA | 8 cut(s) | 11, 261, 409, 619, 649, 730, 762, 1192 |
| Hpy188III | TCNNGA | 3 cut(s) | 274, 860, 1009 |
| Hpy99I | CGWCG | 2 cut(s) | 97, 261 |
| HpyAV | CCTTC | 5 cut(s) | 501, 540, 614, 733, 809 |
| HpyCH4III | ACNGT | 6 cut(s) | 25, 66, 265, 638, 825, 886 |
| HpyCH4IV | ACGT | 4 cut(s) | 256, 367, 844, 964 |
| HpyCH4V | TGCA | 8 cut(s) | 210, 297, 401, 427, 453, 962, 1069, 1235 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 236, 241, 450, 469, 668 |
| HpyF3I | CTNAG | 4 cut(s) | 57, 616, 761, 1191 |
| HpySE526I | ACGT | 4 cut(s) | 256, 367, 844, 964 |
| Hsp92II | CATG | 4 cut(s) | 580, 863, 949, 1139 |
| HspAI | GCGC | 6 cut(s) | 128, 136, 170, 250, 567, 952 |
| Ksp22I | TGATCA | 1 cut(s) | 573 |
| Kzo9I | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| LmnI | GCTCC | 1 cut(s) | 876 |
| LweI | GCATC | 2 cut(s) | 436, 820 |
| MaeI | CTAG | 4 cut(s) | 141, 155, 780, 1049 |
| MaeII | ACGT | 4 cut(s) | 256, 367, 844, 964 |
| MalI | GATC | 9 cut(s) | 8, 86, 284, 304, 330, 575, 585, 777, 1007 |
| MboI | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| MboII | GAAGA | 7 cut(s) | 508, 511, 526, 529, 820, 1007, 1024 |
| MflI | RGATCY | 1 cut(s) | 6 |
| MhlI | GDGCHC | 1 cut(s) | 460 |
| MluCI | AATT | 6 cut(s) | 78, 599, 970, 1041, 1185, 1198 |
| MlyI | GAGTC | 2 cut(s) | 608, 1009 |
| MmeI | TCCRAC | 2 cut(s) | 239, 611 |
| MroXI | GAANNNNTTC | 1 cut(s) | 798 |
| MseI | TTAA | 3 cut(s) | 752, 837, 1212 |
| MslI | CAYNNNNRTG | 1 cut(s) | 26 |
| MspCI | CTTAAG | 1 cut(s) | 836 |
| MspI | CCGG | 2 cut(s) | 39, 49 |
| MvnI | CGCG | 2 cut(s) | 136, 170 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 236, 241, 450, 469, 668 |
| NdeII | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| NlaIII | CATG | 4 cut(s) | 580, 863, 949, 1139 |
| NlaIV | GGNNCC | 2 cut(s) | 8, 16 |
| NspI | RCATGY | 1 cut(s) | 949 |
| OliI | CACNNNNGTG | 1 cut(s) | 26 |
| PagI | TCATGA | 1 cut(s) | 859 |
| PaqCI | CACCTGC | 1 cut(s) | 406 |
| PciI | ACATGT | 1 cut(s) | 945 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 89, 106 |
| PdmI | GAANNNNTTC | 1 cut(s) | 798 |
| PfeI | GAWTC | 2 cut(s) | 97, 1086 |
| Ple19I | CGATCG | 1 cut(s) | 305 |
| PleI | GAGTC | 2 cut(s) | 608, 1009 |
| PpsI | GAGTC | 2 cut(s) | 608, 1009 |
| PscI | ACATGT | 1 cut(s) | 945 |
| PspFI | CCCAGC | 6 cut(s) | 124, 240, 316, 332, 459, 789 |
| PspN4I | GGNNCC | 2 cut(s) | 8, 16 |
| PspPI | GGNCC | 4 cut(s) | 261, 549, 722, 1167 |
| PstI | CTGCAG | 2 cut(s) | 403, 1071 |
| PstNI | CAGNNNCTG | 1 cut(s) | 70 |
| PsuI | RGATCY | 1 cut(s) | 6 |
| PvuI | CGATCG | 1 cut(s) | 305 |
| RsaI | GTAC | 2 cut(s) | 370, 632 |
| RsaNI | GTAC | 2 cut(s) | 369, 631 |
| RseI | CAYNNNNRTG | 1 cut(s) | 26 |
| Rsr2I | CGGWCCG | 1 cut(s) | 261 |
| RsrII | CGGWCCG | 1 cut(s) | 261 |
| SaqAI | TTAA | 3 cut(s) | 752, 837, 1212 |
| Sau3AI | GATC | 9 cut(s) | 6, 84, 282, 302, 328, 573, 583, 775, 1005 |
| Sau96I | GGNCC | 4 cut(s) | 261, 549, 722, 1167 |
| SchI | GAGTC | 2 cut(s) | 608, 1009 |
| SduI | GDGCHC | 1 cut(s) | 460 |
| SfaNI | GCATC | 2 cut(s) | 436, 820 |
| SfcI | CTRYAG | 3 cut(s) | 399, 1067, 1115 |
| SinI | GGWCC | 2 cut(s) | 261, 722 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 26 |
| SmlI | CTYRAG | 2 cut(s) | 626, 836 |
| SmoI | CTYRAG | 2 cut(s) | 626, 836 |
| Sse9I | AATT | 6 cut(s) | 78, 599, 970, 1041, 1185, 1198 |
| SsiI | CCGC | 6 cut(s) | 18, 42, 134, 200, 474, 904 |
| SspMI | CTAG | 4 cut(s) | 141, 155, 780, 1049 |
| TaaI | ACNGT | 6 cut(s) | 25, 66, 265, 638, 825, 886 |
| TaiI | ACGT | 4 cut(s) | 259, 370, 847, 967 |
| TaqI | TCGA | 9 cut(s) | 83, 95, 100, 109, 285, 301, 305, 327, 592 |
| TasI | AATT | 6 cut(s) | 78, 599, 970, 1041, 1185, 1198 |
| TauI | GCSGC | 2 cut(s) | 20, 136 |
| TfiI | GAWTC | 2 cut(s) | 97, 1086 |
| Tru1I | TTAA | 3 cut(s) | 752, 837, 1212 |
| Tru9I | TTAA | 3 cut(s) | 752, 837, 1212 |
| TscAI | CASTG | 5 cut(s) | 28, 153, 688, 709, 896 |
| TspDTI | ATGAA | 3 cut(s) | 527, 848, 912 |
| TspRI | CASTG | 5 cut(s) | 28, 153, 688, 709, 896 |
| Vha464I | CTTAAG | 1 cut(s) | 836 |
| VpaK11BI | GGWCC | 2 cut(s) | 261, 722 |
| XapI | RAATTY | 3 cut(s) | 599, 970, 1185 |
| XceI | RCATGY | 1 cut(s) | 949 |
| XmnI | GAANNNNTTC | 1 cut(s) | 798 |
| XspI | CTAG | 4 cut(s) | 141, 155, 780, 1049 |