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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 218 |
| Acc36I | ACCTGC | 1 cut(s) | 218 |
| AciI | CCGC | 3 cut(s) | 79, 436, 588 |
| AclWI | GGATC | 1 cut(s) | 230 |
| AcuI | CTGAAG | 1 cut(s) | 552 |
| AfaI | GTAC | 1 cut(s) | 284 |
| AfeI | AGCGCT | 1 cut(s) | 131 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 179, 292, 412, 413 |
| AflIII | ACRYGT | 1 cut(s) | 477 |
| AgsI | TTSAA | 2 cut(s) | 422, 469 |
| AjiI | CACGTC | 1 cut(s) | 497 |
| AjnI | CCWGG | 1 cut(s) | 406 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 402, 434 |
| Alw21I | GWGCWC | 1 cut(s) | 67 |
| Alw26I | GTCTC | 1 cut(s) | 503 |
| AlwI | GGATC | 1 cut(s) | 230 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 48 |
| Aor51HI | AGCGCT | 1 cut(s) | 131 |
| AoxI | GGCC | 1 cut(s) | 155 |
| ApeKI | GCWGC | 4 cut(s) | 42, 95, 127, 146 |
| AspLEI | GCGC | 6 cut(s) | 24, 42, 118, 132, 185, 486 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 173 |
| AsuHPI | GGTGA | 1 cut(s) | 59 |
| AsuNHI | GCTAGC | 1 cut(s) | 584 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 266, 299 |
| Bbv12I | GWGCWC | 1 cut(s) | 67 |
| BbvI | GCAGC | 4 cut(s) | 54, 107, 133, 139 |
| BccI | CCATC | 2 cut(s) | 16, 223 |
| BciT130I | CCWGG | 1 cut(s) | 408 |
| BcnI | CCSGG | 1 cut(s) | 173 |
| BcoDI | GTCTC | 1 cut(s) | 503 |
| BfaI | CTAG | 2 cut(s) | 108, 585 |
| BfmI | CTRYAG | 2 cut(s) | 83, 147 |
| BfoI | RGCGCY | 3 cut(s) | 25, 133, 186 |
| BfuAI | ACCTGC | 1 cut(s) | 218 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 320 |
| BisI | GCNGC | 4 cut(s) | 43, 96, 128, 147 |
| BlsI | GCNGC | 4 cut(s) | 44, 97, 129, 148 |
| Bme1390I | CCNGG | 2 cut(s) | 173, 408 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgBI | CACGTC | 1 cut(s) | 497 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 2 cut(s) | 173, 408 |
| BmrI | ACTGGG | 1 cut(s) | 422 |
| BmtI | GCTAGC | 1 cut(s) | 588 |
| BmuI | ACTGGG | 1 cut(s) | 422 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BpuMI | CCSGG | 1 cut(s) | 173 |
| Bsa29I | ATCGAT | 2 cut(s) | 223, 227 |
| BsaJI | CCNNGG | 1 cut(s) | 406 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 179, 292, 412, 413 |
| Bse118I | RCCGGY | 1 cut(s) | 153 |
| Bse1I | ACTGG | 2 cut(s) | 12, 417 |
| BseBI | CCWGG | 1 cut(s) | 408 |
| BseCI | ATCGAT | 2 cut(s) | 223, 227 |
| BseDI | CCNNGG | 1 cut(s) | 406 |
| BseGI | GGATG | 2 cut(s) | 8, 163 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 179, 292, 412, 413 |
| BseMII | CTCAG | 3 cut(s) | 189, 240, 282 |
| BseNI | ACTGG | 2 cut(s) | 12, 417 |
| BseXI | GCAGC | 4 cut(s) | 54, 107, 133, 139 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| Bsh1285I | CGRYCG | 1 cut(s) | 227 |
| BshFI | GGCC | 1 cut(s) | 157 |
| BshVI | ATCGAT | 2 cut(s) | 223, 227 |
| BsiEI | CGRYCG | 1 cut(s) | 227 |
| BsiHKAI | GWGCWC | 1 cut(s) | 67 |
| BsiSI | CCGG | 2 cut(s) | 154, 173 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 179, 292, 412, 413 |
| BsmAI | GTCTC | 1 cut(s) | 503 |
| BsmBI | CGTCTC | 1 cut(s) | 503 |
| BsnI | GGCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 1 cut(s) | 67 |
| Bsp143I | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| BspACI | CCGC | 3 cut(s) | 79, 436, 588 |
| BspANI | GGCC | 1 cut(s) | 157 |
| BspCNI | CTCAG | 3 cut(s) | 190, 241, 281 |
| BspDI | ATCGAT | 2 cut(s) | 223, 227 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspMI | ACCTGC | 1 cut(s) | 218 |
| BspOI | GCTAGC | 1 cut(s) | 588 |
| BspPI | GGATC | 1 cut(s) | 230 |
| BsrFI | RCCGGY | 1 cut(s) | 153 |
| BsrI | ACTGG | 2 cut(s) | 12, 417 |
| BssAI | RCCGGY | 1 cut(s) | 153 |
| BssECI | CCNNGG | 1 cut(s) | 406 |
| BssMI | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| Bst2UI | CCWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 1 cut(s) | 290 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 4 cut(s) | 134, 187, 440, 586 |
| BstDEI | CTNAG | 3 cut(s) | 198, 249, 268 |
| BstF5I | GGATG | 2 cut(s) | 8, 163 |
| BstH2I | RGCGCY | 3 cut(s) | 25, 133, 186 |
| BstHHI | GCGC | 6 cut(s) | 24, 42, 118, 132, 185, 486 |
| BstKTI | GATC | 5 cut(s) | 113, 223, 227, 238, 540 |
| BstMAI | GTCTC | 1 cut(s) | 503 |
| BstMBI | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| BstMCI | CGRYCG | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 48, 124, 133, 320 |
| BstNI | CCWGG | 1 cut(s) | 408 |
| BstNSI | RCATGY | 1 cut(s) | 481 |
| BstSCI | CCNGG | 2 cut(s) | 171, 406 |
| BstSFI | CTRYAG | 2 cut(s) | 83, 147 |
| BstV1I | GCAGC | 4 cut(s) | 54, 107, 133, 139 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 59 |
| Bsu15I | ATCGAT | 2 cut(s) | 223, 227 |
| BsuRI | GGCC | 1 cut(s) | 157 |
| BsuTUI | ATCGAT | 2 cut(s) | 223, 227 |
| BtrI | CACGTC | 1 cut(s) | 497 |
| BtsCI | GGATG | 2 cut(s) | 8, 163 |
| BtsI | GCAGTG | 1 cut(s) | 333 |
| BtsIMutI | CAGTG | 1 cut(s) | 333 |
| BveI | ACCTGC | 1 cut(s) | 218 |
| Cac8I | GCNNGC | 4 cut(s) | 134, 187, 440, 586 |
| CaiI | CAGNNNCTG | 1 cut(s) | 48 |
| CfoI | GCGC | 6 cut(s) | 24, 42, 118, 132, 185, 486 |
| Cfr10I | RCCGGY | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| ClaI | ATCGAT | 2 cut(s) | 223, 227 |
| Csp6I | GTAC | 1 cut(s) | 283 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 490, 525 |
| CviAII | CATG | 1 cut(s) | 478 |
| CviJI | RGCY | 6 cut(s) | 45, 88, 98, 157, 206, 233 |
| CviKI_1 | RGCY | 6 cut(s) | 45, 88, 98, 157, 206, 233 |
| CviQI | GTAC | 1 cut(s) | 283 |
| DdeI | CTNAG | 3 cut(s) | 198, 249, 268 |
| DpnI | GATC | 5 cut(s) | 112, 222, 226, 237, 539 |
| DpnII | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco47III | AGCGCT | 1 cut(s) | 131 |
| Eco57I | CTGAAG | 1 cut(s) | 552 |
| EcoRII | CCWGG | 1 cut(s) | 406 |
| Esp3I | CGTCTC | 1 cut(s) | 503 |
| FaeI | CATG | 1 cut(s) | 481 |
| FaiI | YATR | 8 cut(s) | 450, 479, 531, 536, 578, 580, 582, 598 |
| FatI | CATG | 1 cut(s) | 477 |
| Fnu4HI | GCNGC | 4 cut(s) | 43, 96, 128, 147 |
| FokI | GGATG | 1 cut(s) | 150 |
| Fsp4HI | GCNGC | 4 cut(s) | 43, 96, 128, 147 |
| FspBI | CTAG | 2 cut(s) | 108, 585 |
| GlaI | GCGC | 6 cut(s) | 23, 41, 117, 131, 184, 485 |
| GluI | GCNGC | 4 cut(s) | 43, 96, 128, 147 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| HaeII | RGCGCY | 3 cut(s) | 25, 133, 186 |
| HaeIII | GGCC | 1 cut(s) | 157 |
| HapII | CCGG | 2 cut(s) | 154, 173 |
| HhaI | GCGC | 6 cut(s) | 24, 42, 118, 132, 185, 486 |
| Hin1II | CATG | 1 cut(s) | 481 |
| Hin6I | GCGC | 6 cut(s) | 22, 40, 116, 130, 183, 484 |
| HinP1I | GCGC | 6 cut(s) | 22, 40, 116, 130, 183, 484 |
| HinfI | GANTC | 4 cut(s) | 200, 266, 432, 547 |
| HpaII | CCGG | 2 cut(s) | 154, 173 |
| HphI | GGTGA | 1 cut(s) | 59 |
| Hpy166II | GTNNAC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 2 cut(s) | 271, 301 |
| Hpy188III | TCNNGA | 2 cut(s) | 108, 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 17 |
| HpyAV | CCTTC | 4 cut(s) | 35, 168, 266, 507 |
| HpyCH4III | ACNGT | 1 cut(s) | 290 |
| HpyCH4IV | ACGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 2 cut(s) | 149, 213 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 48, 124, 133, 320 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 249, 268 |
| HpySE526I | ACGT | 1 cut(s) | 496 |
| Hsp92II | CATG | 1 cut(s) | 481 |
| HspAI | GCGC | 6 cut(s) | 22, 40, 116, 130, 183, 484 |
| Kzo9I | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| LmnI | GCTCC | 1 cut(s) | 408 |
| Lsp1109I | GCAGC | 4 cut(s) | 54, 107, 133, 139 |
| MaeI | CTAG | 2 cut(s) | 108, 585 |
| MaeII | ACGT | 1 cut(s) | 496 |
| MaeIII | GTNAC | 1 cut(s) | 457 |
| MalI | GATC | 5 cut(s) | 112, 222, 226, 237, 539 |
| MboI | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| MhlI | GDGCHC | 1 cut(s) | 67 |
| MluCI | AATT | 1 cut(s) | 502 |
| MlyI | GAGTC | 3 cut(s) | 209, 260, 541 |
| MmeI | TCCRAC | 1 cut(s) | 263 |
| MnlI | CCTC | 4 cut(s) | 80, 86, 109, 152 |
| MseI | TTAA | 1 cut(s) | 488 |
| MspI | CCGG | 2 cut(s) | 154, 173 |
| MspR9I | CCNGG | 2 cut(s) | 173, 408 |
| MvaI | CCWGG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 48, 124, 133, 320 |
| NciI | CCSGG | 1 cut(s) | 173 |
| NdeII | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| NheI | GCTAGC | 1 cut(s) | 584 |
| NlaIII | CATG | 1 cut(s) | 481 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 1 cut(s) | 457 |
| NspI | RCATGY | 1 cut(s) | 481 |
| PaqCI | CACCTGC | 1 cut(s) | 218 |
| PciI | ACATGT | 1 cut(s) | 477 |
| PfeI | GAWTC | 1 cut(s) | 432 |
| PkrI | GCNGC | 4 cut(s) | 44, 97, 129, 148 |
| Ple19I | CGATCG | 1 cut(s) | 227 |
| PleI | GAGTC | 3 cut(s) | 208, 260, 541 |
| PpsI | GAGTC | 3 cut(s) | 208, 260, 541 |
| PscI | ACATGT | 1 cut(s) | 477 |
| Psp6I | CCWGG | 1 cut(s) | 406 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspGI | CCWGG | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 48 |
| PvuI | CGATCG | 1 cut(s) | 227 |
| RsaI | GTAC | 1 cut(s) | 284 |
| RsaNI | GTAC | 1 cut(s) | 283 |
| SaqAI | TTAA | 1 cut(s) | 488 |
| SatI | GCNGC | 4 cut(s) | 43, 96, 128, 147 |
| Sau3AI | GATC | 5 cut(s) | 110, 220, 224, 235, 537 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 3 cut(s) | 209, 260, 541 |
| ScrFI | CCNGG | 2 cut(s) | 173, 408 |
| SduI | GDGCHC | 1 cut(s) | 67 |
| SetI | ASST | 8 cut(s) | 72, 144, 199, 212, 220, 250, 499, 560 |
| SfcI | CTRYAG | 2 cut(s) | 83, 147 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmlI | CTYRAG | 1 cut(s) | 278 |
| SmoI | CTYRAG | 1 cut(s) | 278 |
| Sse9I | AATT | 1 cut(s) | 502 |
| SsiI | CCGC | 3 cut(s) | 79, 436, 588 |
| SspMI | CTAG | 2 cut(s) | 108, 585 |
| StyD4I | CCNGG | 2 cut(s) | 171, 406 |
| TaaI | ACNGT | 1 cut(s) | 290 |
| TaiI | ACGT | 1 cut(s) | 499 |
| TaqI | TCGA | 4 cut(s) | 28, 223, 227, 244 |
| TasI | AATT | 1 cut(s) | 502 |
| TfiI | GAWTC | 1 cut(s) | 432 |
| Tru1I | TTAA | 1 cut(s) | 488 |
| Tru9I | TTAA | 1 cut(s) | 488 |
| TscAI | CASTG | 1 cut(s) | 340 |
| TseFI | GTSAC | 1 cut(s) | 457 |
| TseI | GCWGC | 4 cut(s) | 42, 95, 127, 146 |
| Tsp45I | GTSAC | 1 cut(s) | 457 |
| TspDTI | ATGAA | 1 cut(s) | 372 |
| TspRI | CASTG | 1 cut(s) | 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XbaI | TCTAGA | 1 cut(s) | 107 |
| XceI | RCATGY | 1 cut(s) | 481 |
| XspI | CTAG | 2 cut(s) | 108, 585 |