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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 407 |
| Acc36I | ACCTGC | 1 cut(s) | 407 |
| AccB1I | GGYRCC | 1 cut(s) | 86 |
| AccI | GTMKAC | 1 cut(s) | 178 |
| AccII | CGCG | 1 cut(s) | 272 |
| AciI | CCGC | 6 cut(s) | 186, 249, 270, 352, 724, 862 |
| AclWI | GGATC | 1 cut(s) | 545 |
| AcoI | YGGCCR | 1 cut(s) | 310 |
| AcsI | RAATTY | 1 cut(s) | 566 |
| AcuI | CTGAAG | 2 cut(s) | 418, 785 |
| AdeI | CACNNNGTG | 1 cut(s) | 71 |
| AfaI | GTAC | 1 cut(s) | 599 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 50, 61, 346, 607, 748, 849 |
| AflII | CTTAAG | 1 cut(s) | 794 |
| AgsI | TTSAA | 2 cut(s) | 484, 504 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AluBI | AGCT | 3 cut(s) | 31, 319, 475 |
| AluI | AGCT | 3 cut(s) | 31, 319, 475 |
| Alw26I | GTCTC | 2 cut(s) | 10, 156 |
| AlwI | GGATC | 1 cut(s) | 545 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 380, 399 |
| Ama87I | CYCGRG | 1 cut(s) | 82 |
| AoxI | GGCC | 3 cut(s) | 52, 301, 310 |
| ApeKI | GCWGC | 8 cut(s) | 276, 408, 411, 428, 446, 472, 491, 532 |
| ApoI | RAATTY | 1 cut(s) | 566 |
| AspLEI | GCGC | 2 cut(s) | 404, 532 |
| AspS9I | GGNCC | 2 cut(s) | 292, 349 |
| AsuC2I | CCSGG | 2 cut(s) | 83, 84 |
| AsuHPI | GGTGA | 2 cut(s) | 411, 706 |
| AvaI | CYCGRG | 1 cut(s) | 82 |
| AvaII | GGWCC | 2 cut(s) | 292, 349 |
| BaeGI | GKGCMC | 3 cut(s) | 67, 89, 463 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 581, 614 |
| BanI | GGYRCC | 1 cut(s) | 86 |
| BauI | CACGAG | 2 cut(s) | 138, 153 |
| BbsI | GAAGAC | 1 cut(s) | 773 |
| BbvI | GCAGC | 8 cut(s) | 288, 420, 423, 433, 440, 484, 503, 519 |
| BccI | CCATC | 3 cut(s) | 459, 538, 691 |
| BceAI | ACGGC | 1 cut(s) | 205 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 632, 666 |
| BcnI | CCSGG | 2 cut(s) | 83, 84 |
| BcoDI | GTCTC | 2 cut(s) | 10, 156 |
| BfaI | CTAG | 1 cut(s) | 738 |
| BfmI | CTRYAG | 1 cut(s) | 406 |
| BfoI | RGCGCY | 1 cut(s) | 533 |
| BfrI | CTTAAG | 1 cut(s) | 794 |
| BfuAI | ACCTGC | 1 cut(s) | 407 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 309, 635 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 84 |
| Bme18I | GGWCC | 2 cut(s) | 292, 349 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmeT110I | CYCGRG | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 2 cut(s) | 292, 349 |
| BmiI | GGNNCC | 3 cut(s) | 88, 209, 350 |
| BmrFI | CCNGG | 2 cut(s) | 83, 84 |
| BmsI | GCATC | 2 cut(s) | 261, 386 |
| BpiI | GAAGAC | 1 cut(s) | 773 |
| BpuEI | CTTGAG | 1 cut(s) | 614 |
| BpuMI | CCSGG | 2 cut(s) | 83, 84 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 91 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 7, 37, 354, 384 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 50, 61, 346, 607, 748, 849 |
| Bse118I | RCCGGY | 2 cut(s) | 329, 364 |
| Bse1I | ACTGG | 1 cut(s) | 304 |
| Bse3DI | GCAATG | 1 cut(s) | 181 |
| BseDI | CCNNGG | 2 cut(s) | 82, 91 |
| BseGI | GGATG | 3 cut(s) | 252, 451, 806 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 50, 61, 346, 607, 748, 849 |
| BseMI | GCAATG | 1 cut(s) | 181 |
| BseMII | CTCAG | 3 cut(s) | 259, 597, 710 |
| BseNI | ACTGG | 1 cut(s) | 304 |
| BseRI | GAGGAG | 1 cut(s) | 219 |
| BseSI | GKGCMC | 3 cut(s) | 67, 89, 463 |
| BseXI | GCAGC | 8 cut(s) | 288, 420, 423, 433, 440, 484, 503, 519 |
| BseYI | CCCAGC | 5 cut(s) | 258, 284, 373, 392, 747 |
| Bsh1236I | CGCG | 1 cut(s) | 272 |
| BshFI | GGCC | 3 cut(s) | 54, 303, 312 |
| BshNI | GGYRCC | 1 cut(s) | 86 |
| BsiHKCI | CYCGRG | 1 cut(s) | 82 |
| BsiSI | CCGG | 3 cut(s) | 83, 330, 365 |
| BslFI | GGGAC | 4 cut(s) | 214, 250, 362, 495 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 50, 61, 346, 607, 748, 849 |
| BsmAI | GTCTC | 2 cut(s) | 10, 156 |
| BsmFI | GGGAC | 4 cut(s) | 214, 250, 362, 495 |
| BsmI | GAATGC | 1 cut(s) | 793 |
| BsnI | GGCC | 3 cut(s) | 54, 303, 312 |
| BsoBI | CYCGRG | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 3 cut(s) | 67, 89, 463 |
| Bsp143I | GATC | 3 cut(s) | 342, 515, 550 |
| Bsp19I | CCATGG | 1 cut(s) | 91 |
| BspACI | CCGC | 6 cut(s) | 186, 249, 270, 352, 724, 862 |
| BspANI | GGCC | 3 cut(s) | 54, 303, 312 |
| BspCNI | CTCAG | 3 cut(s) | 258, 596, 711 |
| BspFNI | CGCG | 1 cut(s) | 272 |
| BspHI | TCATGA | 1 cut(s) | 817 |
| BspLI | GGNNCC | 3 cut(s) | 88, 209, 350 |
| BspMAI | CTGCAG | 1 cut(s) | 410 |
| BspMI | ACCTGC | 1 cut(s) | 407 |
| BspPI | GGATC | 1 cut(s) | 545 |
| BspT107I | GGYRCC | 1 cut(s) | 86 |
| BspTI | CTTAAG | 1 cut(s) | 794 |
| BsrDI | GCAATG | 1 cut(s) | 181 |
| BsrFI | RCCGGY | 2 cut(s) | 329, 364 |
| BsrI | ACTGG | 1 cut(s) | 304 |
| BssAI | RCCGGY | 2 cut(s) | 329, 364 |
| BssECI | CCNNGG | 2 cut(s) | 82, 91 |
| BssMI | GATC | 3 cut(s) | 342, 515, 550 |
| BssSI | CACGAG | 2 cut(s) | 138, 153 |
| BssT1I | CCWWGG | 1 cut(s) | 91 |
| Bst2BI | CACGAG | 2 cut(s) | 138, 153 |
| Bst4CI | ACNGT | 3 cut(s) | 162, 605, 844 |
| BstAFI | CTTAAG | 1 cut(s) | 794 |
| BstC8I | GCNNGC | 8 cut(s) | 218, 274, 281, 301, 356, 406, 477, 866 |
| BstDEI | CTNAG | 4 cut(s) | 68, 245, 583, 719 |
| BstDSI | CCRYGG | 1 cut(s) | 91 |
| BstF5I | GGATG | 3 cut(s) | 252, 451, 806 |
| BstFNI | CGCG | 1 cut(s) | 272 |
| BstH2I | RGCGCY | 1 cut(s) | 533 |
| BstHHI | GCGC | 2 cut(s) | 404, 532 |
| BstKTI | GATC | 3 cut(s) | 345, 518, 553 |
| BstMAI | GTCTC | 2 cut(s) | 10, 156 |
| BstMBI | GATC | 3 cut(s) | 342, 515, 550 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 285, 309, 374, 408, 635 |
| BstSCI | CCNGG | 2 cut(s) | 81, 82 |
| BstSFI | CTRYAG | 1 cut(s) | 406 |
| BstSLI | GKGCMC | 3 cut(s) | 67, 89, 463 |
| BstUI | CGCG | 1 cut(s) | 272 |
| BstV1I | GCAGC | 8 cut(s) | 288, 420, 423, 433, 440, 484, 503, 519 |
| BstV2I | GAAGAC | 1 cut(s) | 773 |
| BsuRI | GGCC | 3 cut(s) | 54, 303, 312 |
| BtgI | CCRYGG | 1 cut(s) | 91 |
| BtsCI | GGATG | 3 cut(s) | 252, 451, 806 |
| BtsI | GCAGTG | 1 cut(s) | 648 |
| BtsIMutI | CAGTG | 2 cut(s) | 539, 648 |
| BveI | ACCTGC | 1 cut(s) | 407 |
| Cac8I | GCNNGC | 8 cut(s) | 218, 274, 281, 301, 356, 406, 477, 866 |
| CaiI | CAGNNNCTG | 2 cut(s) | 380, 399 |
| CciI | TCATGA | 1 cut(s) | 817 |
| CfoI | GCGC | 2 cut(s) | 404, 532 |
| Cfr10I | RCCGGY | 2 cut(s) | 329, 364 |
| Cfr13I | GGNCC | 2 cut(s) | 292, 349 |
| Cfr9I | CCCGGG | 1 cut(s) | 82 |
| Csp6I | GTAC | 1 cut(s) | 598 |
| CviAII | CATG | 4 cut(s) | 20, 59, 92, 818 |
| CviQI | GTAC | 1 cut(s) | 598 |
| DdeI | CTNAG | 4 cut(s) | 68, 245, 583, 719 |
| DpnI | GATC | 3 cut(s) | 344, 517, 552 |
| DpnII | GATC | 3 cut(s) | 342, 515, 550 |
| DraIII | CACNNNGTG | 1 cut(s) | 71 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| EaeI | YGGCCR | 1 cut(s) | 310 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 91 |
| Eco47I | GGWCC | 2 cut(s) | 292, 349 |
| Eco57I | CTGAAG | 2 cut(s) | 418, 785 |
| Eco88I | CYCGRG | 1 cut(s) | 82 |
| EcoO109I | RGGNCCY | 1 cut(s) | 292 |
| EcoT14I | CCWWGG | 1 cut(s) | 91 |
| ErhI | CCWWGG | 1 cut(s) | 91 |
| FaeI | CATG | 4 cut(s) | 23, 62, 95, 821 |
| FaiI | YATR | 9 cut(s) | 21, 60, 93, 129, 131, 465, 729, 784, 819 |
| FaqI | GGGAC | 4 cut(s) | 214, 250, 362, 495 |
| FatI | CATG | 4 cut(s) | 19, 58, 91, 817 |
| FauI | CCCGC | 2 cut(s) | 179, 277 |
| FauNDI | CATATG | 1 cut(s) | 129 |
| FblI | GTMKAC | 1 cut(s) | 178 |
| FokI | GGATG | 3 cut(s) | 239, 438, 813 |
| FspBI | CTAG | 1 cut(s) | 738 |
| GlaI | GCGC | 2 cut(s) | 403, 531 |
| GsaI | CCCAGC | 5 cut(s) | 262, 288, 377, 396, 751 |
| HaeII | RGCGCY | 1 cut(s) | 533 |
| HaeIII | GGCC | 3 cut(s) | 54, 303, 312 |
| HapII | CCGG | 3 cut(s) | 83, 330, 365 |
| HhaI | GCGC | 2 cut(s) | 404, 532 |
| Hin1II | CATG | 4 cut(s) | 23, 62, 95, 821 |
| Hin6I | GCGC | 2 cut(s) | 402, 530 |
| HinP1I | GCGC | 2 cut(s) | 402, 530 |
| HincII | GTYRAC | 1 cut(s) | 179 |
| HindII | GTYRAC | 1 cut(s) | 179 |
| HinfI | GANTC | 3 cut(s) | 141, 521, 581 |
| HpaII | CCGG | 3 cut(s) | 83, 330, 365 |
| HphI | GGTGA | 2 cut(s) | 411, 706 |
| Hpy166II | GTNNAC | 2 cut(s) | 158, 179 |
| Hpy188I | TCNGA | 5 cut(s) | 146, 520, 586, 616, 720 |
| Hpy188III | TCNNGA | 3 cut(s) | 325, 340, 818 |
| Hpy8I | GTNNAC | 2 cut(s) | 158, 179 |
| Hpy99I | CGWCG | 1 cut(s) | 529 |
| HpyAV | CCTTC | 5 cut(s) | 65, 426, 442, 490, 510 |
| HpyCH4III | ACNGT | 3 cut(s) | 162, 605, 844 |
| HpyCH4V | TGCA | 4 cut(s) | 216, 299, 408, 491 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 285, 309, 374, 408, 635 |
| HpyF3I | CTNAG | 4 cut(s) | 68, 245, 583, 719 |
| Hsp92II | CATG | 4 cut(s) | 23, 62, 95, 821 |
| HspAI | GCGC | 2 cut(s) | 402, 530 |
| Kzo9I | GATC | 3 cut(s) | 342, 515, 550 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| Lsp1109I | GCAGC | 8 cut(s) | 288, 420, 423, 433, 440, 484, 503, 519 |
| LweI | GCATC | 2 cut(s) | 261, 386 |
| MaeI | CTAG | 1 cut(s) | 738 |
| MalI | GATC | 3 cut(s) | 344, 517, 552 |
| MboI | GATC | 3 cut(s) | 342, 515, 550 |
| MboII | GAAGA | 1 cut(s) | 778 |
| MhlI | GDGCHC | 3 cut(s) | 67, 89, 463 |
| MluCI | AATT | 1 cut(s) | 566 |
| MlyI | GAGTC | 3 cut(s) | 150, 530, 575 |
| MmeI | TCCRAC | 1 cut(s) | 578 |
| MnlI | CCTC | 3 cut(s) | 240, 546, 714 |
| MseI | TTAA | 2 cut(s) | 710, 795 |
| MslI | CAYNNNNRTG | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 1 cut(s) | 249 |
| MspCI | CTTAAG | 1 cut(s) | 794 |
| MspI | CCGG | 3 cut(s) | 83, 330, 365 |
| MspR9I | CCNGG | 2 cut(s) | 83, 84 |
| Mva1269I | GAATGC | 1 cut(s) | 793 |
| MvnI | CGCG | 1 cut(s) | 272 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 285, 309, 374, 408, 635 |
| NciI | CCSGG | 2 cut(s) | 83, 84 |
| NcoI | CCATGG | 1 cut(s) | 91 |
| NdeI | CATATG | 1 cut(s) | 129 |
| NdeII | GATC | 3 cut(s) | 342, 515, 550 |
| NlaIII | CATG | 4 cut(s) | 23, 62, 95, 821 |
| NlaIV | GGNNCC | 3 cut(s) | 88, 209, 350 |
| PagI | TCATGA | 1 cut(s) | 817 |
| PaqCI | CACCTGC | 1 cut(s) | 407 |
| PctI | GAATGC | 1 cut(s) | 793 |
| PleI | GAGTC | 3 cut(s) | 149, 529, 575 |
| PpsI | GAGTC | 3 cut(s) | 149, 529, 575 |
| PpuMI | RGGWCCY | 1 cut(s) | 292 |
| Psp5II | RGGWCCY | 1 cut(s) | 292 |
| PspFI | CCCAGC | 5 cut(s) | 258, 284, 373, 392, 747 |
| PspN4I | GGNNCC | 3 cut(s) | 88, 209, 350 |
| PspPI | GGNCC | 2 cut(s) | 292, 349 |
| PspPPI | RGGWCCY | 1 cut(s) | 292 |
| PstI | CTGCAG | 1 cut(s) | 410 |
| PstNI | CAGNNNCTG | 2 cut(s) | 380, 399 |
| RsaI | GTAC | 1 cut(s) | 599 |
| RsaNI | GTAC | 1 cut(s) | 598 |
| RseI | CAYNNNNRTG | 1 cut(s) | 456 |
| SalI | GTCGAC | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 710, 795 |
| Sau3AI | GATC | 3 cut(s) | 342, 515, 550 |
| Sau96I | GGNCC | 2 cut(s) | 292, 349 |
| SchI | GAGTC | 3 cut(s) | 150, 530, 575 |
| ScrFI | CCNGG | 2 cut(s) | 83, 84 |
| SduI | GDGCHC | 3 cut(s) | 67, 89, 463 |
| SfaNI | GCATC | 2 cut(s) | 261, 386 |
| SfcI | CTRYAG | 1 cut(s) | 406 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 309 |
| SinI | GGWCC | 2 cut(s) | 292, 349 |
| SmaI | CCCGGG | 1 cut(s) | 84 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 456 |
| SmlI | CTYRAG | 2 cut(s) | 593, 794 |
| SmoI | CTYRAG | 2 cut(s) | 593, 794 |
| Sse9I | AATT | 1 cut(s) | 566 |
| SsiI | CCGC | 6 cut(s) | 186, 249, 270, 352, 724, 862 |
| SspI | AATATT | 2 cut(s) | 714, 814 |
| SspMI | CTAG | 1 cut(s) | 738 |
| StyD4I | CCNGG | 2 cut(s) | 81, 82 |
| StyI | CCWWGG | 1 cut(s) | 91 |
| TaaI | ACNGT | 3 cut(s) | 162, 605, 844 |
| TaqI | TCGA | 2 cut(s) | 178, 559 |
| TasI | AATT | 1 cut(s) | 566 |
| TauI | GCSGC | 2 cut(s) | 252, 727 |
| Tru1I | TTAA | 2 cut(s) | 710, 795 |
| Tru9I | TTAA | 2 cut(s) | 710, 795 |
| TscAI | CASTG | 2 cut(s) | 546, 655 |
| TseI | GCWGC | 8 cut(s) | 276, 408, 411, 428, 446, 472, 491, 532 |
| TspDTI | ATGAA | 5 cut(s) | 47, 693, 806, 834, 870 |
| TspGWI | ACGGA | 1 cut(s) | 603 |
| TspMI | CCCGGG | 1 cut(s) | 82 |
| TspRI | CASTG | 2 cut(s) | 546, 655 |
| Vha464I | CTTAAG | 1 cut(s) | 794 |
| VpaK11BI | GGWCC | 2 cut(s) | 292, 349 |
| XapI | RAATTY | 1 cut(s) | 566 |
| XmaI | CCCGGG | 1 cut(s) | 82 |
| XmiI | GTMKAC | 1 cut(s) | 178 |
| XspI | CTAG | 1 cut(s) | 738 |