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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 102 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 486, 785 |
| AciI | CCGC | 1 cut(s) | 88 |
| AclWI | GGATC | 4 cut(s) | 184, 434, 605, 618 |
| AcsI | RAATTY | 1 cut(s) | 369 |
| AcvI | CACGTG | 2 cut(s) | 452, 470 |
| AdeI | CACNNNGTG | 1 cut(s) | 470 |
| AfaI | GTAC | 2 cut(s) | 565, 680 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 75, 720 |
| AflIII | ACRYGT | 2 cut(s) | 433, 517 |
| AgsI | TTSAA | 2 cut(s) | 121, 283 |
| AjiI | CACGTC | 2 cut(s) | 149, 434 |
| AjnI | CCWGG | 2 cut(s) | 347, 811 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 54, 86 |
| AluBI | AGCT | 3 cut(s) | 7, 289, 602 |
| AluI | AGCT | 3 cut(s) | 7, 289, 602 |
| Alw26I | GTCTC | 1 cut(s) | 155 |
| AlwI | GGATC | 4 cut(s) | 184, 434, 605, 618 |
| AoxI | GGCC | 5 cut(s) | 350, 499, 508, 544, 772 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| ApoI | RAATTY | 1 cut(s) | 369 |
| AspA2I | CCTAGG | 1 cut(s) | 605 |
| AspLEI | GCGC | 1 cut(s) | 138 |
| AspS9I | GGNCC | 7 cut(s) | 109, 499, 509, 545, 569, 773, 823 |
| AsuHPI | GGTGA | 1 cut(s) | 406 |
| AvaII | GGWCC | 3 cut(s) | 109, 569, 823 |
| AvrII | CCTAGG | 1 cut(s) | 605 |
| BamHI | GGATCC | 1 cut(s) | 610 |
| BauI | CACGAG | 1 cut(s) | 332 |
| BbrPI | CACGTG | 2 cut(s) | 452, 470 |
| BbvI | GCAGC | 1 cut(s) | 120 |
| BccI | CCATC | 1 cut(s) | 527 |
| BceAI | ACGGC | 1 cut(s) | 486 |
| BciT130I | CCWGG | 2 cut(s) | 349, 813 |
| BclI | TGATCA | 1 cut(s) | 291 |
| BcoDI | GTCTC | 1 cut(s) | 155 |
| BfaI | CTAG | 3 cut(s) | 59, 233, 606 |
| BfmI | CTRYAG | 2 cut(s) | 652, 718 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 507 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlnI | CCTAGG | 1 cut(s) | 605 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| Bme1390I | CCNGG | 2 cut(s) | 349, 813 |
| Bme18I | GGWCC | 3 cut(s) | 109, 569, 823 |
| BmgBI | CACGTC | 2 cut(s) | 149, 434 |
| BmgT120I | GGNCC | 7 cut(s) | 109, 499, 509, 545, 569, 773, 823 |
| BmiI | GGNNCC | 4 cut(s) | 110, 571, 586, 612 |
| BmrFI | CCNGG | 2 cut(s) | 349, 813 |
| BmrI | ACTGGG | 1 cut(s) | 567 |
| BmsI | GCATC | 2 cut(s) | 4, 708 |
| BmuI | ACTGGG | 1 cut(s) | 567 |
| BsaAI | YACGTR | 2 cut(s) | 452, 470 |
| BsaJI | CCNNGG | 3 cut(s) | 502, 588, 605 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 75, 720 |
| Bse1I | ACTGG | 5 cut(s) | 73, 241, 571, 573, 673 |
| BseBI | CCWGG | 2 cut(s) | 349, 813 |
| BseDI | CCNNGG | 3 cut(s) | 502, 588, 605 |
| BseGI | GGATG | 1 cut(s) | 19 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 75, 720 |
| BseMII | CTCAG | 2 cut(s) | 767, 845 |
| BseNI | ACTGG | 5 cut(s) | 73, 241, 571, 573, 673 |
| BseXI | GCAGC | 1 cut(s) | 120 |
| BsgI | GTGCAG | 1 cut(s) | 614 |
| BshFI | GGCC | 5 cut(s) | 352, 501, 510, 546, 774 |
| BslFI | GGGAC | 3 cut(s) | 373, 492, 555 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 75, 720 |
| BsmAI | GTCTC | 1 cut(s) | 155 |
| BsmBI | CGTCTC | 1 cut(s) | 155 |
| BsmFI | GGGAC | 3 cut(s) | 373, 492, 555 |
| BsnI | GGCC | 5 cut(s) | 352, 501, 510, 546, 774 |
| Bsp143I | GATC | 4 cut(s) | 189, 291, 439, 610 |
| BspACI | CCGC | 1 cut(s) | 88 |
| BspANI | GGCC | 5 cut(s) | 352, 501, 510, 546, 774 |
| BspCNI | CTCAG | 2 cut(s) | 766, 844 |
| BspHI | TCATGA | 1 cut(s) | 43 |
| BspLI | GGNNCC | 4 cut(s) | 110, 571, 586, 612 |
| BspPI | GGATC | 4 cut(s) | 184, 434, 605, 618 |
| BsrI | ACTGG | 5 cut(s) | 73, 241, 571, 573, 673 |
| BssECI | CCNNGG | 3 cut(s) | 502, 588, 605 |
| BssMI | GATC | 4 cut(s) | 189, 291, 439, 610 |
| BssSI | CACGAG | 1 cut(s) | 332 |
| BssT1I | CCWWGG | 2 cut(s) | 588, 605 |
| Bst2BI | CACGAG | 1 cut(s) | 332 |
| Bst2UI | CCWGG | 2 cut(s) | 349, 813 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| BstBAI | YACGTR | 2 cut(s) | 452, 470 |
| BstC8I | GCNNGC | 3 cut(s) | 92, 544, 697 |
| BstDEI | CTNAG | 3 cut(s) | 703, 753, 831 |
| BstDSI | CCRYGG | 1 cut(s) | 502 |
| BstF5I | GGATG | 1 cut(s) | 19 |
| BstHHI | GCGC | 1 cut(s) | 138 |
| BstKTI | GATC | 4 cut(s) | 192, 294, 442, 613 |
| BstMAI | GTCTC | 1 cut(s) | 155 |
| BstMBI | GATC | 4 cut(s) | 189, 291, 439, 610 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 507, 696 |
| BstNI | CCWGG | 2 cut(s) | 349, 813 |
| BstNSI | RCATGY | 2 cut(s) | 133, 521 |
| BstSCI | CCNGG | 2 cut(s) | 347, 811 |
| BstSFI | CTRYAG | 2 cut(s) | 652, 718 |
| BstV1I | GCAGC | 1 cut(s) | 120 |
| BstX2I | RGATCY | 1 cut(s) | 610 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 522 |
| BstYI | RGATCY | 1 cut(s) | 610 |
| BsuRI | GGCC | 5 cut(s) | 352, 501, 510, 546, 774 |
| BtgI | CCRYGG | 1 cut(s) | 502 |
| BtrI | CACGTC | 2 cut(s) | 149, 434 |
| BtsCI | GGATG | 1 cut(s) | 19 |
| BtsIMutI | CAGTG | 2 cut(s) | 80, 580 |
| Cac8I | GCNNGC | 3 cut(s) | 92, 544, 697 |
| CciI | TCATGA | 1 cut(s) | 43 |
| CfoI | GCGC | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 7 cut(s) | 109, 499, 509, 545, 569, 773, 823 |
| Csp6I | GTAC | 2 cut(s) | 564, 679 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 142, 177 |
| CviAII | CATG | 7 cut(s) | 44, 113, 130, 482, 518, 557, 581 |
| CviQI | GTAC | 2 cut(s) | 564, 679 |
| DdeI | CTNAG | 3 cut(s) | 703, 753, 831 |
| DpnI | GATC | 4 cut(s) | 191, 293, 441, 612 |
| DpnII | GATC | 4 cut(s) | 189, 291, 439, 610 |
| DraIII | CACNNNGTG | 1 cut(s) | 470 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 486, 785 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 486, 785 |
| Eco130I | CCWWGG | 2 cut(s) | 588, 605 |
| Eco147I | AGGCCT | 1 cut(s) | 352 |
| Eco47I | GGWCC | 3 cut(s) | 109, 569, 823 |
| Eco72I | CACGTG | 2 cut(s) | 452, 470 |
| EcoO109I | RGGNCCY | 3 cut(s) | 509, 773, 823 |
| EcoRII | CCWGG | 2 cut(s) | 347, 811 |
| EcoT14I | CCWWGG | 2 cut(s) | 588, 605 |
| ErhI | CCWWGG | 2 cut(s) | 588, 605 |
| Esp3I | CGTCTC | 1 cut(s) | 155 |
| FaeI | CATG | 7 cut(s) | 47, 116, 133, 485, 521, 560, 584 |
| FaqI | GGGAC | 3 cut(s) | 373, 492, 555 |
| FatI | CATG | 7 cut(s) | 43, 112, 129, 481, 517, 556, 580 |
| FbaI | TGATCA | 1 cut(s) | 291 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FokI | GGATG | 1 cut(s) | 26 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| FspBI | CTAG | 3 cut(s) | 59, 233, 606 |
| GlaI | GCGC | 1 cut(s) | 137 |
| GluI | GCNGC | 1 cut(s) | 134 |
| HaeIII | GGCC | 5 cut(s) | 352, 501, 510, 546, 774 |
| HhaI | GCGC | 1 cut(s) | 138 |
| Hin1II | CATG | 7 cut(s) | 47, 116, 133, 485, 521, 560, 584 |
| Hin6I | GCGC | 1 cut(s) | 136 |
| HinP1I | GCGC | 1 cut(s) | 136 |
| HincII | GTYRAC | 1 cut(s) | 790 |
| HindII | GTYRAC | 1 cut(s) | 790 |
| HinfI | GANTC | 2 cut(s) | 270, 734 |
| HphI | GGTGA | 1 cut(s) | 406 |
| Hpy166II | GTNNAC | 2 cut(s) | 337, 790 |
| Hpy188III | TCNNGA | 4 cut(s) | 44, 334, 374, 848 |
| Hpy8I | GTNNAC | 2 cut(s) | 337, 790 |
| HpyAV | CCTTC | 1 cut(s) | 761 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 5 cut(s) | 148, 433, 451, 469, 843 |
| HpyCH4V | TGCA | 4 cut(s) | 304, 464, 595, 803 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 507, 696 |
| HpyF3I | CTNAG | 3 cut(s) | 703, 753, 831 |
| HpySE526I | ACGT | 5 cut(s) | 148, 433, 451, 469, 843 |
| Hsp92II | CATG | 7 cut(s) | 47, 116, 133, 485, 521, 560, 584 |
| HspAI | GCGC | 1 cut(s) | 136 |
| Ksp22I | TGATCA | 1 cut(s) | 291 |
| Kzo9I | GATC | 4 cut(s) | 189, 291, 439, 610 |
| LmnI | GCTCC | 4 cut(s) | 4, 590, 607, 742 |
| Lsp1109I | GCAGC | 1 cut(s) | 120 |
| LweI | GCATC | 2 cut(s) | 4, 708 |
| MaeI | CTAG | 3 cut(s) | 59, 233, 606 |
| MaeII | ACGT | 5 cut(s) | 148, 433, 451, 469, 843 |
| MalI | GATC | 4 cut(s) | 191, 293, 441, 612 |
| MboI | GATC | 4 cut(s) | 189, 291, 439, 610 |
| MboII | GAAGA | 1 cut(s) | 191 |
| MfeI | CAATTG | 1 cut(s) | 798 |
| MflI | RGATCY | 1 cut(s) | 610 |
| MluCI | AATT | 2 cut(s) | 369, 798 |
| MlyI | GAGTC | 1 cut(s) | 743 |
| MmeI | TCCRAC | 2 cut(s) | 231, 409 |
| MseI | TTAA | 1 cut(s) | 140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 520 |
| MspR9I | CCNGG | 2 cut(s) | 349, 813 |
| MunI | CAATTG | 1 cut(s) | 798 |
| MvaI | CCWGG | 2 cut(s) | 349, 813 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 507, 696 |
| NdeII | GATC | 4 cut(s) | 189, 291, 439, 610 |
| NlaIII | CATG | 7 cut(s) | 47, 116, 133, 485, 521, 560, 584 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 571, 586, 612 |
| NspI | RCATGY | 2 cut(s) | 133, 521 |
| PagI | TCATGA | 1 cut(s) | 43 |
| PceI | AGGCCT | 1 cut(s) | 352 |
| PciI | ACATGT | 1 cut(s) | 517 |
| PfeI | GAWTC | 1 cut(s) | 270 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| PleI | GAGTC | 1 cut(s) | 742 |
| PmaCI | CACGTG | 2 cut(s) | 452, 470 |
| PmlI | CACGTG | 2 cut(s) | 452, 470 |
| PpsI | GAGTC | 1 cut(s) | 742 |
| Ppu21I | YACGTR | 2 cut(s) | 452, 470 |
| PpuMI | RGGWCCY | 1 cut(s) | 823 |
| PscI | ACATGT | 1 cut(s) | 517 |
| PsiI | TTATAA | 1 cut(s) | 102 |
| Psp5II | RGGWCCY | 1 cut(s) | 823 |
| Psp6I | CCWGG | 2 cut(s) | 347, 811 |
| PspCI | CACGTG | 2 cut(s) | 452, 470 |
| PspGI | CCWGG | 2 cut(s) | 347, 811 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 571, 586, 612 |
| PspPI | GGNCC | 7 cut(s) | 109, 499, 509, 545, 569, 773, 823 |
| PspPPI | RGGWCCY | 1 cut(s) | 823 |
| PsuI | RGATCY | 1 cut(s) | 610 |
| RsaI | GTAC | 2 cut(s) | 565, 680 |
| RsaNI | GTAC | 2 cut(s) | 564, 679 |
| RseI | CAYNNNNRTG | 1 cut(s) | 520 |
| SaqAI | TTAA | 1 cut(s) | 140 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 4 cut(s) | 189, 291, 439, 610 |
| Sau96I | GGNCC | 7 cut(s) | 109, 499, 509, 545, 569, 773, 823 |
| SchI | GAGTC | 1 cut(s) | 743 |
| ScrFI | CCNGG | 2 cut(s) | 349, 813 |
| SfaNI | GCATC | 2 cut(s) | 4, 708 |
| SfcI | CTRYAG | 2 cut(s) | 652, 718 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 507 |
| SinI | GGWCC | 3 cut(s) | 109, 569, 823 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 520 |
| Sse9I | AATT | 2 cut(s) | 369, 798 |
| SseBI | AGGCCT | 1 cut(s) | 352 |
| SsiI | CCGC | 1 cut(s) | 88 |
| SspMI | CTAG | 3 cut(s) | 59, 233, 606 |
| StuI | AGGCCT | 1 cut(s) | 352 |
| StyD4I | CCNGG | 2 cut(s) | 347, 811 |
| StyI | CCWWGG | 2 cut(s) | 588, 605 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaiI | ACGT | 5 cut(s) | 151, 436, 454, 472, 846 |
| TasI | AATT | 2 cut(s) | 369, 798 |
| TfiI | GAWTC | 1 cut(s) | 270 |
| Tru1I | TTAA | 1 cut(s) | 140 |
| Tru9I | TTAA | 1 cut(s) | 140 |
| TscAI | CASTG | 2 cut(s) | 80, 580 |
| TseI | GCWGC | 1 cut(s) | 133 |
| TspDTI | ATGAA | 3 cut(s) | 32, 96, 210 |
| TspRI | CASTG | 2 cut(s) | 80, 580 |
| VpaK11BI | GGWCC | 3 cut(s) | 109, 569, 823 |
| XapI | RAATTY | 1 cut(s) | 369 |
| XceI | RCATGY | 2 cut(s) | 133, 521 |
| XmaJI | CCTAGG | 1 cut(s) | 605 |
| XspI | CTAG | 3 cut(s) | 59, 233, 606 |