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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 114 |
| AccI | GTMKAC | 1 cut(s) | 243 |
| AccIII | TCCGGA | 1 cut(s) | 280 |
| AciI | CCGC | 1 cut(s) | 75 |
| AclWI | GGATC | 6 cut(s) | 131, 160, 167, 180, 272, 509 |
| AcsI | RAATTY | 1 cut(s) | 338 |
| AcuI | CTGAAG | 1 cut(s) | 524 |
| AdeI | CACNNNGTG | 1 cut(s) | 28 |
| AfaI | GTAC | 3 cut(s) | 183, 371, 536 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 119, 379, 529 |
| AgsI | TTSAA | 5 cut(s) | 141, 212, 272, 332, 547 |
| AluBI | AGCT | 2 cut(s) | 189, 268 |
| AluI | AGCT | 2 cut(s) | 189, 268 |
| AlwI | GGATC | 6 cut(s) | 131, 160, 167, 180, 272, 509 |
| Ama87I | CYCGRG | 1 cut(s) | 114 |
| Aor13HI | TCCGGA | 1 cut(s) | 280 |
| AoxI | GGCC | 2 cut(s) | 199, 260 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| ApoI | RAATTY | 1 cut(s) | 338 |
| AspS9I | GGNCC | 2 cut(s) | 199, 260 |
| AsuC2I | CCSGG | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 487 |
| AvaI | CYCGRG | 1 cut(s) | 114 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 353, 386 |
| BamHI | GGATCC | 1 cut(s) | 172 |
| BbsI | GAAGAC | 1 cut(s) | 554 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BccI | CCATC | 2 cut(s) | 381, 437 |
| BcnI | CCSGG | 1 cut(s) | 170 |
| BfaI | CTAG | 3 cut(s) | 63, 96, 519 |
| BfmI | CTRYAG | 1 cut(s) | 563 |
| BisI | GCNGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 1 cut(s) | 170 |
| BmeT110I | CYCGRG | 1 cut(s) | 114 |
| BmgT120I | GGNCC | 2 cut(s) | 199, 260 |
| BmiI | GGNNCC | 1 cut(s) | 174 |
| BmrFI | CCNGG | 1 cut(s) | 170 |
| BmrI | ACTGGG | 2 cut(s) | 97, 538 |
| BmsI | GCATC | 1 cut(s) | 90 |
| BmuI | ACTGGG | 2 cut(s) | 97, 538 |
| BpiI | GAAGAC | 1 cut(s) | 554 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| BpuMI | CCSGG | 1 cut(s) | 170 |
| BsaWI | WCCGGW | 1 cut(s) | 280 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 119, 379, 529 |
| Bse1I | ACTGG | 2 cut(s) | 92, 533 |
| BseAI | TCCGGA | 1 cut(s) | 280 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 119, 379, 529 |
| BseMII | CTCAG | 4 cut(s) | 176, 255, 314, 369 |
| BseNI | ACTGG | 2 cut(s) | 92, 533 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BshFI | GGCC | 2 cut(s) | 201, 262 |
| BsiHKCI | CYCGRG | 1 cut(s) | 114 |
| BsiSI | CCGG | 2 cut(s) | 169, 281 |
| BslFI | GGGAC | 1 cut(s) | 82 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 119, 379, 529 |
| BsmFI | GGGAC | 1 cut(s) | 82 |
| BsnI | GGCC | 2 cut(s) | 201, 262 |
| BsoBI | CYCGRG | 1 cut(s) | 114 |
| Bsp13I | TCCGGA | 1 cut(s) | 280 |
| Bsp143I | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| BspACI | CCGC | 1 cut(s) | 75 |
| BspANI | GGCC | 2 cut(s) | 201, 262 |
| BspCNI | CTCAG | 4 cut(s) | 177, 256, 313, 368 |
| BspEI | TCCGGA | 1 cut(s) | 280 |
| BspLI | GGNNCC | 1 cut(s) | 174 |
| BspPI | GGATC | 6 cut(s) | 131, 160, 167, 180, 272, 509 |
| BsrI | ACTGG | 2 cut(s) | 92, 533 |
| BssMI | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| Bst4CI | ACNGT | 3 cut(s) | 26, 196, 465 |
| BstC8I | GCNNGC | 1 cut(s) | 59 |
| BstDEI | CTNAG | 5 cut(s) | 185, 203, 264, 300, 355 |
| BstKTI | GATC | 6 cut(s) | 126, 168, 175, 280, 325, 517 |
| BstMBI | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 233, 407 |
| BstSCI | CCNGG | 1 cut(s) | 168 |
| BstSFI | CTRYAG | 1 cut(s) | 563 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstV2I | GAAGAC | 1 cut(s) | 554 |
| BstX2I | RGATCY | 1 cut(s) | 172 |
| BstYI | RGATCY | 1 cut(s) | 172 |
| BsuRI | GGCC | 2 cut(s) | 201, 262 |
| BtsI | GCAGTG | 1 cut(s) | 420 |
| BtsIMutI | CAGTG | 5 cut(s) | 22, 201, 420, 441, 526 |
| Cac8I | GCNNGC | 1 cut(s) | 59 |
| Cfr13I | GGNCC | 2 cut(s) | 199, 260 |
| Csp6I | GTAC | 3 cut(s) | 182, 370, 535 |
| CviJI | RGCY | 8 cut(s) | 189, 201, 220, 262, 268, 305, 320, 522 |
| CviKI_1 | RGCY | 8 cut(s) | 189, 201, 220, 262, 268, 305, 320, 522 |
| CviQI | GTAC | 3 cut(s) | 182, 370, 535 |
| DdeI | CTNAG | 5 cut(s) | 185, 203, 264, 300, 355 |
| DpnI | GATC | 6 cut(s) | 125, 167, 174, 279, 324, 516 |
| DpnII | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| DraIII | CACNNNGTG | 1 cut(s) | 28 |
| Eco57I | CTGAAG | 1 cut(s) | 524 |
| Eco88I | CYCGRG | 1 cut(s) | 114 |
| FaiI | YATR | 8 cut(s) | 47, 109, 225, 232, 234, 317, 510, 565 |
| FaqI | GGGAC | 1 cut(s) | 82 |
| FauNDI | CATATG | 1 cut(s) | 232 |
| FblI | GTMKAC | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 1 cut(s) | 228 |
| FspBI | CTAG | 3 cut(s) | 63, 96, 519 |
| GluI | GCNGC | 1 cut(s) | 228 |
| HaeIII | GGCC | 2 cut(s) | 201, 262 |
| HapII | CCGG | 2 cut(s) | 169, 281 |
| HincII | GTYRAC | 1 cut(s) | 244 |
| HindII | GTYRAC | 1 cut(s) | 244 |
| HinfI | GANTC | 1 cut(s) | 353 |
| HpaII | CCGG | 2 cut(s) | 169, 281 |
| HphI | GGTGA | 2 cut(s) | 20, 487 |
| Hpy166II | GTNNAC | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 3 cut(s) | 358, 388, 469 |
| Hpy188III | TCNNGA | 2 cut(s) | 176, 281 |
| Hpy8I | GTNNAC | 1 cut(s) | 244 |
| HpyAV | CCTTC | 1 cut(s) | 548 |
| HpyCH4III | ACNGT | 3 cut(s) | 26, 196, 465 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 81, 230 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 233, 407 |
| HpyF3I | CTNAG | 5 cut(s) | 185, 203, 264, 300, 355 |
| Kpn2I | TCCGGA | 1 cut(s) | 280 |
| Kzo9I | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| LpnPI | CCDG | 8 cut(s) | 73, 182, 189, 276, 287, 294, 348, 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| LweI | GCATC | 1 cut(s) | 90 |
| MaeI | CTAG | 3 cut(s) | 63, 96, 519 |
| MaeIII | GTNAC | 2 cut(s) | 8, 91 |
| MalI | GATC | 6 cut(s) | 125, 167, 174, 279, 324, 516 |
| MboI | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| MboII | GAAGA | 1 cut(s) | 559 |
| MflI | RGATCY | 1 cut(s) | 172 |
| MluCI | AATT | 5 cut(s) | 32, 48, 252, 327, 338 |
| MlyI | GAGTC | 1 cut(s) | 347 |
| MnlI | CCTC | 3 cut(s) | 50, 110, 123 |
| MroI | TCCGGA | 1 cut(s) | 280 |
| MseI | TTAA | 1 cut(s) | 491 |
| MspI | CCGG | 2 cut(s) | 169, 281 |
| MspR9I | CCNGG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 233, 407 |
| NciI | CCSGG | 1 cut(s) | 170 |
| NdeI | CATATG | 1 cut(s) | 232 |
| NdeII | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| NlaIV | GGNNCC | 1 cut(s) | 174 |
| NmuCI | GTSAC | 2 cut(s) | 8, 91 |
| PaeR7I | CTCGAG | 1 cut(s) | 114 |
| PfoI | TCCNGGA | 1 cut(s) | 168 |
| PkrI | GCNGC | 1 cut(s) | 229 |
| PleI | GAGTC | 1 cut(s) | 347 |
| PpsI | GAGTC | 1 cut(s) | 347 |
| PspN4I | GGNNCC | 1 cut(s) | 174 |
| PspPI | GGNCC | 2 cut(s) | 199, 260 |
| PspXI | VCTCGAGB | 1 cut(s) | 114 |
| PsuI | RGATCY | 1 cut(s) | 172 |
| RsaI | GTAC | 3 cut(s) | 183, 371, 536 |
| RsaNI | GTAC | 3 cut(s) | 182, 370, 535 |
| SalI | GTCGAC | 1 cut(s) | 242 |
| SaqAI | TTAA | 1 cut(s) | 491 |
| SatI | GCNGC | 1 cut(s) | 228 |
| Sau3AI | GATC | 6 cut(s) | 123, 165, 172, 277, 322, 514 |
| Sau96I | GGNCC | 2 cut(s) | 199, 260 |
| SchI | GAGTC | 1 cut(s) | 347 |
| ScrFI | CCNGG | 1 cut(s) | 170 |
| SetI | ASST | 6 cut(s) | 121, 191, 270, 337, 477, 540 |
| SfaNI | GCATC | 1 cut(s) | 90 |
| SfcI | CTRYAG | 1 cut(s) | 563 |
| Sfr274I | CTCGAG | 1 cut(s) | 114 |
| SlaI | CTCGAG | 1 cut(s) | 114 |
| SmlI | CTYRAG | 2 cut(s) | 114, 365 |
| SmoI | CTYRAG | 2 cut(s) | 114, 365 |
| Sse9I | AATT | 5 cut(s) | 32, 48, 252, 327, 338 |
| SsiI | CCGC | 1 cut(s) | 75 |
| SspMI | CTAG | 3 cut(s) | 63, 96, 519 |
| StyD4I | CCNGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 3 cut(s) | 26, 196, 465 |
| TaqI | TCGA | 2 cut(s) | 115, 243 |
| TasI | AATT | 5 cut(s) | 32, 48, 252, 327, 338 |
| TatI | WGTACW | 1 cut(s) | 181 |
| Tru1I | TTAA | 1 cut(s) | 491 |
| Tru9I | TTAA | 1 cut(s) | 491 |
| TscAI | CASTG | 5 cut(s) | 29, 201, 427, 448, 533 |
| TseFI | GTSAC | 2 cut(s) | 8, 91 |
| TseI | GCWGC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 2 cut(s) | 8, 91 |
| TspDTI | ATGAA | 1 cut(s) | 474 |
| TspRI | CASTG | 5 cut(s) | 29, 201, 427, 448, 533 |
| XapI | RAATTY | 1 cut(s) | 338 |
| XhoI | CTCGAG | 1 cut(s) | 114 |
| XmiI | GTMKAC | 1 cut(s) | 243 |
| XspI | CTAG | 3 cut(s) | 63, 96, 519 |