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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 334 |
| AclWI | GGATC | 3 cut(s) | 2, 116, 200 |
| AcsI | RAATTY | 1 cut(s) | 615 |
| AcuI | CTGAAG | 1 cut(s) | 215 |
| AfaI | GTAC | 2 cut(s) | 56, 227 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 220 |
| AgsI | TTSAA | 4 cut(s) | 238, 367, 529, 583 |
| AjiI | CACGTC | 1 cut(s) | 395 |
| AjnI | CCWGG | 1 cut(s) | 593 |
| AluBI | AGCT | 3 cut(s) | 180, 314, 470 |
| AluI | AGCT | 3 cut(s) | 180, 314, 470 |
| Alw26I | GTCTC | 2 cut(s) | 401, 556 |
| AlwI | GGATC | 3 cut(s) | 2, 116, 200 |
| AoxI | GGCC | 1 cut(s) | 596 |
| ApoI | RAATTY | 1 cut(s) | 615 |
| AspLEI | GCGC | 1 cut(s) | 384 |
| AspS9I | GGNCC | 1 cut(s) | 597 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 403, 435 |
| BbsI | GAAGAC | 1 cut(s) | 245 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 595 |
| BcoDI | GTCTC | 2 cut(s) | 401, 556 |
| BfaI | CTAG | 4 cut(s) | 210, 311, 479, 622 |
| BfmI | CTRYAG | 2 cut(s) | 346, 406 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 1 cut(s) | 595 |
| BmgBI | CACGTC | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 1 cut(s) | 597 |
| BmrFI | CCNGG | 1 cut(s) | 595 |
| BmrI | ACTGGG | 1 cut(s) | 612 |
| BmsI | GCATC | 1 cut(s) | 250 |
| BmuI | ACTGGG | 1 cut(s) | 612 |
| BpiI | GAAGAC | 1 cut(s) | 245 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 220 |
| Bse1I | ACTGG | 3 cut(s) | 54, 487, 607 |
| BseBI | CCWGG | 1 cut(s) | 595 |
| BseGI | GGATG | 1 cut(s) | 265 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 220 |
| BseMII | CTCAG | 4 cut(s) | 54, 167, 182, 549 |
| BseNI | ACTGG | 3 cut(s) | 54, 487, 607 |
| BseYI | CCCAGC | 1 cut(s) | 219 |
| BshFI | GGCC | 1 cut(s) | 598 |
| BslFI | GGGAC | 1 cut(s) | 619 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 220 |
| BsmAI | GTCTC | 2 cut(s) | 401, 556 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 1 cut(s) | 619 |
| BsnI | GGCC | 1 cut(s) | 598 |
| Bsp143I | GATC | 4 cut(s) | 7, 121, 205, 435 |
| BspACI | CCGC | 1 cut(s) | 334 |
| BspANI | GGCC | 1 cut(s) | 598 |
| BspCNI | CTCAG | 4 cut(s) | 53, 168, 183, 550 |
| BspHI | TCATGA | 1 cut(s) | 289 |
| BspPI | GGATC | 3 cut(s) | 2, 116, 200 |
| BsrI | ACTGG | 3 cut(s) | 54, 487, 607 |
| BssMI | GATC | 4 cut(s) | 7, 121, 205, 435 |
| Bst2UI | CCWGG | 1 cut(s) | 595 |
| Bst4CI | ACNGT | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 1 cut(s) | 338 |
| BstDEI | CTNAG | 4 cut(s) | 40, 176, 191, 558 |
| BstF5I | GGATG | 1 cut(s) | 265 |
| BstHHI | GCGC | 1 cut(s) | 384 |
| BstKTI | GATC | 4 cut(s) | 10, 124, 208, 438 |
| BstMAI | GTCTC | 2 cut(s) | 401, 556 |
| BstMBI | GATC | 4 cut(s) | 7, 121, 205, 435 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 1 cut(s) | 595 |
| BstSCI | CCNGG | 1 cut(s) | 593 |
| BstSFI | CTRYAG | 2 cut(s) | 346, 406 |
| BstV2I | GAAGAC | 1 cut(s) | 245 |
| BsuRI | GGCC | 1 cut(s) | 598 |
| BtrI | CACGTC | 1 cut(s) | 395 |
| BtsCI | GGATG | 1 cut(s) | 265 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 326, 600 |
| Cac8I | GCNNGC | 1 cut(s) | 338 |
| CciI | TCATGA | 1 cut(s) | 289 |
| CfoI | GCGC | 1 cut(s) | 384 |
| Cfr13I | GGNCC | 1 cut(s) | 597 |
| Csp6I | GTAC | 2 cut(s) | 55, 226 |
| CviAII | CATG | 2 cut(s) | 20, 290 |
| CviJI | RGCY | 8 cut(s) | 5, 180, 213, 314, 470, 543, 557, 598 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 180, 213, 314, 470, 543, 557, 598 |
| CviQI | GTAC | 2 cut(s) | 55, 226 |
| DdeI | CTNAG | 4 cut(s) | 40, 176, 191, 558 |
| DpnI | GATC | 4 cut(s) | 9, 123, 207, 437 |
| DpnII | GATC | 4 cut(s) | 7, 121, 205, 435 |
| Eco57I | CTGAAG | 1 cut(s) | 215 |
| EcoRII | CCWGG | 1 cut(s) | 593 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FaeI | CATG | 2 cut(s) | 23, 293 |
| FaiI | YATR | 9 cut(s) | 21, 77, 201, 291, 348, 377, 434, 441, 476 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 563, 595 |
| FaqI | GGGAC | 1 cut(s) | 619 |
| FatI | CATG | 2 cut(s) | 19, 289 |
| FokI | GGATG | 1 cut(s) | 272 |
| FspBI | CTAG | 4 cut(s) | 210, 311, 479, 622 |
| GlaI | GCGC | 1 cut(s) | 383 |
| GsaI | CCCAGC | 1 cut(s) | 223 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| HaeIII | GGCC | 1 cut(s) | 598 |
| HhaI | GCGC | 1 cut(s) | 384 |
| Hin1II | CATG | 2 cut(s) | 23, 293 |
| Hin6I | GCGC | 1 cut(s) | 382 |
| HinP1I | GCGC | 1 cut(s) | 382 |
| HinfI | GANTC | 5 cut(s) | 38, 330, 445, 516, 574 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 177, 192 |
| Hpy188III | TCNNGA | 2 cut(s) | 290, 580 |
| HpyAV | CCTTC | 4 cut(s) | 38, 239, 405, 535 |
| HpyCH4III | ACNGT | 1 cut(s) | 255 |
| HpyCH4IV | ACGT | 2 cut(s) | 274, 394 |
| HpyCH4V | TGCA | 1 cut(s) | 550 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 176, 191, 558 |
| HpySE526I | ACGT | 2 cut(s) | 274, 394 |
| Hsp92II | CATG | 2 cut(s) | 23, 293 |
| HspAI | GCGC | 1 cut(s) | 382 |
| Kzo9I | GATC | 4 cut(s) | 7, 121, 205, 435 |
| LpnPI | CCDG | 7 cut(s) | 35, 205, 318, 500, 580, 588, 607 |
| LweI | GCATC | 1 cut(s) | 250 |
| MaeI | CTAG | 4 cut(s) | 210, 311, 479, 622 |
| MaeII | ACGT | 2 cut(s) | 274, 394 |
| MalI | GATC | 4 cut(s) | 9, 123, 207, 437 |
| MboI | GATC | 4 cut(s) | 7, 121, 205, 435 |
| MboII | GAAGA | 2 cut(s) | 250, 437 |
| MluCI | AATT | 5 cut(s) | 183, 400, 417, 463, 615 |
| MlyI | GAGTC | 2 cut(s) | 32, 439 |
| MmeI | TCCRAC | 2 cut(s) | 35, 477 |
| MnlI | CCTC | 1 cut(s) | 186 |
| MseI | TTAA | 4 cut(s) | 167, 182, 267, 386 |
| MspR9I | CCNGG | 1 cut(s) | 595 |
| MvaI | CCWGG | 1 cut(s) | 595 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 4 cut(s) | 7, 121, 205, 435 |
| NlaIII | CATG | 2 cut(s) | 23, 293 |
| PagI | TCATGA | 1 cut(s) | 289 |
| PfeI | GAWTC | 3 cut(s) | 330, 516, 574 |
| PleI | GAGTC | 2 cut(s) | 32, 439 |
| PpsI | GAGTC | 2 cut(s) | 32, 439 |
| Psp6I | CCWGG | 1 cut(s) | 593 |
| PspFI | CCCAGC | 1 cut(s) | 219 |
| PspGI | CCWGG | 1 cut(s) | 593 |
| PspPI | GGNCC | 1 cut(s) | 597 |
| RsaI | GTAC | 2 cut(s) | 56, 227 |
| RsaNI | GTAC | 2 cut(s) | 55, 226 |
| SaqAI | TTAA | 4 cut(s) | 167, 182, 267, 386 |
| Sau3AI | GATC | 4 cut(s) | 7, 121, 205, 435 |
| Sau96I | GGNCC | 1 cut(s) | 597 |
| SchI | GAGTC | 2 cut(s) | 32, 439 |
| ScrFI | CCNGG | 1 cut(s) | 595 |
| SfaNI | GCATC | 1 cut(s) | 250 |
| SfcI | CTRYAG | 2 cut(s) | 346, 406 |
| Sse9I | AATT | 5 cut(s) | 183, 400, 417, 463, 615 |
| SsiI | CCGC | 1 cut(s) | 334 |
| SspMI | CTAG | 4 cut(s) | 210, 311, 479, 622 |
| StyD4I | CCNGG | 1 cut(s) | 593 |
| TaaI | ACNGT | 1 cut(s) | 255 |
| TaiI | ACGT | 2 cut(s) | 277, 397 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 183, 400, 417, 463, 615 |
| TfiI | GAWTC | 3 cut(s) | 330, 516, 574 |
| Tru1I | TTAA | 4 cut(s) | 167, 182, 267, 386 |
| Tru9I | TTAA | 4 cut(s) | 167, 182, 267, 386 |
| TscAI | CASTG | 3 cut(s) | 112, 326, 607 |
| TspDTI | ATGAA | 2 cut(s) | 150, 278 |
| TspRI | CASTG | 3 cut(s) | 112, 326, 607 |
| XapI | RAATTY | 1 cut(s) | 615 |
| XspI | CTAG | 4 cut(s) | 210, 311, 479, 622 |