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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 143, 658, 735, 755, 758 |
| AclWI | GGATC | 4 cut(s) | 110, 152, 269, 524 |
| AcoI | YGGCCR | 1 cut(s) | 354 |
| AcsI | RAATTY | 1 cut(s) | 55 |
| AcuI | CTGAAG | 1 cut(s) | 539 |
| AfaI | GTAC | 3 cut(s) | 298, 395, 551 |
| AfeI | AGCGCT | 1 cut(s) | 180 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 139, 338, 383, 403, 544 |
| AflII | CTTAAG | 1 cut(s) | 590 |
| AgsI | TTSAA | 2 cut(s) | 383, 562 |
| AjnI | CCWGG | 1 cut(s) | 169 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 624, 656 |
| AluBI | AGCT | 5 cut(s) | 227, 267, 693, 714, 745 |
| AluI | AGCT | 5 cut(s) | 227, 267, 693, 714, 745 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| AlwI | GGATC | 4 cut(s) | 110, 152, 269, 524 |
| Ama87I | CYCGRG | 1 cut(s) | 82 |
| Aor51HI | AGCGCT | 1 cut(s) | 180 |
| AoxI | GGCC | 7 cut(s) | 16, 76, 144, 172, 304, 354, 678 |
| ApeKI | GCWGC | 4 cut(s) | 344, 366, 714, 724 |
| ApoI | RAATTY | 1 cut(s) | 55 |
| AspLEI | GCGC | 5 cut(s) | 181, 211, 245, 344, 734 |
| AspS9I | GGNCC | 3 cut(s) | 86, 305, 678 |
| AsuC2I | CCSGG | 2 cut(s) | 83, 84 |
| AsuHPI | GGTGA | 2 cut(s) | 13, 502 |
| AvaI | CYCGRG | 1 cut(s) | 82 |
| AvaII | GGWCC | 1 cut(s) | 86 |
| BaeGI | GKGCMC | 1 cut(s) | 221 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 377, 410 |
| BbsI | GAAGAC | 1 cut(s) | 569 |
| BbvI | GCAGC | 4 cut(s) | 353, 356, 701, 736 |
| BceAI | ACGGC | 1 cut(s) | 319 |
| BciT130I | CCWGG | 1 cut(s) | 171 |
| BcnI | CCSGG | 2 cut(s) | 83, 84 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfaI | CTAG | 2 cut(s) | 95, 155 |
| BfmI | CTRYAG | 1 cut(s) | 182 |
| BfoI | RGCGCY | 2 cut(s) | 182, 212 |
| BfrI | CTTAAG | 1 cut(s) | 590 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 171 |
| BisI | GCNGC | 7 cut(s) | 144, 345, 367, 715, 725, 735, 756 |
| BlsI | GCNGC | 7 cut(s) | 145, 346, 368, 716, 726, 736, 757 |
| Bme1390I | CCNGG | 3 cut(s) | 83, 84, 171 |
| Bme18I | GGWCC | 1 cut(s) | 86 |
| BmeT110I | CYCGRG | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 3 cut(s) | 86, 305, 678 |
| BmiI | GGNNCC | 1 cut(s) | 87 |
| BmrFI | CCNGG | 3 cut(s) | 83, 84, 171 |
| BmsI | GCATC | 3 cut(s) | 254, 490, 574 |
| BpiI | GAAGAC | 1 cut(s) | 569 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| BpuEI | CTTGAG | 1 cut(s) | 410 |
| BpuMI | CCSGG | 2 cut(s) | 83, 84 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 179, 209 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 139, 338, 383, 403, 544 |
| Bse118I | RCCGGY | 3 cut(s) | 14, 74, 139 |
| Bse1I | ACTGG | 3 cut(s) | 323, 639, 718 |
| BseBI | CCWGG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 2 cut(s) | 82, 337 |
| BseGI | GGATG | 1 cut(s) | 589 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 139, 338, 383, 403, 544 |
| BseMII | CTCAG | 2 cut(s) | 506, 642 |
| BseNI | ACTGG | 3 cut(s) | 323, 639, 718 |
| BseRI | GAGGAG | 1 cut(s) | 259 |
| BseSI | GKGCMC | 1 cut(s) | 221 |
| BseXI | GCAGC | 4 cut(s) | 353, 356, 701, 736 |
| BseYI | CCCAGC | 7 cut(s) | 43, 125, 161, 263, 307, 533, 543 |
| BsgI | GTGCAG | 1 cut(s) | 51 |
| BshFI | GGCC | 7 cut(s) | 18, 78, 146, 174, 306, 356, 680 |
| BsiHKCI | CYCGRG | 1 cut(s) | 82 |
| BsiSI | CCGG | 5 cut(s) | 15, 75, 83, 140, 353 |
| BslFI | GGGAC | 1 cut(s) | 609 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 139, 338, 383, 403, 544 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsmFI | GGGAC | 1 cut(s) | 609 |
| BsnI | GGCC | 7 cut(s) | 18, 78, 146, 174, 306, 356, 680 |
| BsoBI | CYCGRG | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 1 cut(s) | 221 |
| Bsp143I | GATC | 4 cut(s) | 115, 157, 274, 529 |
| BspACI | CCGC | 5 cut(s) | 143, 658, 735, 755, 758 |
| BspANI | GGCC | 7 cut(s) | 18, 78, 146, 174, 306, 356, 680 |
| BspCNI | CTCAG | 2 cut(s) | 507, 641 |
| BspLI | GGNNCC | 1 cut(s) | 87 |
| BspPI | GGATC | 4 cut(s) | 110, 152, 269, 524 |
| BspTI | CTTAAG | 1 cut(s) | 590 |
| BsrFI | RCCGGY | 3 cut(s) | 14, 74, 139 |
| BsrI | ACTGG | 3 cut(s) | 323, 639, 718 |
| BssAI | RCCGGY | 3 cut(s) | 14, 74, 139 |
| BssECI | CCNNGG | 2 cut(s) | 82, 337 |
| BssMI | GATC | 4 cut(s) | 115, 157, 274, 529 |
| Bst2UI | CCWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 2 cut(s) | 401, 579 |
| BstAFI | CTTAAG | 1 cut(s) | 590 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 2 cut(s) | 313, 662 |
| BstDEI | CTNAG | 3 cut(s) | 515, 628, 771 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 381 |
| BstF5I | GGATG | 1 cut(s) | 589 |
| BstH2I | RGCGCY | 2 cut(s) | 182, 212 |
| BstHHI | GCGC | 5 cut(s) | 181, 211, 245, 344, 734 |
| BstKTI | GATC | 4 cut(s) | 118, 160, 277, 532 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BstMBI | GATC | 4 cut(s) | 115, 157, 274, 529 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 104, 171, 251, 312, 353 |
| BstNI | CCWGG | 1 cut(s) | 171 |
| BstSCI | CCNGG | 3 cut(s) | 81, 82, 169 |
| BstSFI | CTRYAG | 1 cut(s) | 182 |
| BstSLI | GKGCMC | 1 cut(s) | 221 |
| BstV1I | GCAGC | 4 cut(s) | 353, 356, 701, 736 |
| BstV2I | GAAGAC | 1 cut(s) | 569 |
| BstX2I | RGATCY | 2 cut(s) | 115, 157 |
| BstYI | RGATCY | 2 cut(s) | 115, 157 |
| BsuRI | GGCC | 7 cut(s) | 18, 78, 146, 174, 306, 356, 680 |
| BtsCI | GGATG | 1 cut(s) | 589 |
| BtsI | GCAGTG | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 650, 725 |
| Cac8I | GCNNGC | 2 cut(s) | 313, 662 |
| CfoI | GCGC | 5 cut(s) | 181, 211, 245, 344, 734 |
| Cfr10I | RCCGGY | 3 cut(s) | 14, 74, 139 |
| Cfr13I | GGNCC | 3 cut(s) | 86, 305, 678 |
| Cfr9I | CCCGGG | 1 cut(s) | 82 |
| Csp6I | GTAC | 3 cut(s) | 297, 394, 550 |
| CviQI | GTAC | 3 cut(s) | 297, 394, 550 |
| DdeI | CTNAG | 3 cut(s) | 515, 628, 771 |
| DpnI | GATC | 4 cut(s) | 117, 159, 276, 531 |
| DpnII | GATC | 4 cut(s) | 115, 157, 274, 529 |
| EaeI | YGGCCR | 1 cut(s) | 354 |
| Eco47I | GGWCC | 1 cut(s) | 86 |
| Eco47III | AGCGCT | 1 cut(s) | 180 |
| Eco57I | CTGAAG | 1 cut(s) | 539 |
| Eco88I | CYCGRG | 1 cut(s) | 82 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 381 |
| EcoO109I | RGGNCCY | 1 cut(s) | 86 |
| EcoRII | CCWGG | 1 cut(s) | 169 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaiI | YATR | 3 cut(s) | 525, 672, 711 |
| FaqI | GGGAC | 1 cut(s) | 609 |
| Fnu4HI | GCNGC | 7 cut(s) | 144, 345, 367, 715, 725, 735, 756 |
| FokI | GGATG | 1 cut(s) | 596 |
| Fsp4HI | GCNGC | 7 cut(s) | 144, 345, 367, 715, 725, 735, 756 |
| FspBI | CTAG | 2 cut(s) | 95, 155 |
| GlaI | GCGC | 5 cut(s) | 180, 210, 244, 343, 733 |
| GluI | GCNGC | 7 cut(s) | 144, 345, 367, 715, 725, 735, 756 |
| GsaI | CCCAGC | 7 cut(s) | 47, 129, 165, 267, 311, 537, 547 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeII | RGCGCY | 2 cut(s) | 182, 212 |
| HaeIII | GGCC | 7 cut(s) | 18, 78, 146, 174, 306, 356, 680 |
| HapII | CCGG | 5 cut(s) | 15, 75, 83, 140, 353 |
| HhaI | GCGC | 5 cut(s) | 181, 211, 245, 344, 734 |
| Hin6I | GCGC | 5 cut(s) | 179, 209, 243, 342, 732 |
| HinP1I | GCGC | 5 cut(s) | 179, 209, 243, 342, 732 |
| HinfI | GANTC | 3 cut(s) | 319, 654, 764 |
| HpaII | CCGG | 5 cut(s) | 15, 75, 83, 140, 353 |
| HphI | GGTGA | 2 cut(s) | 13, 502 |
| Hpy166II | GTNNAC | 1 cut(s) | 763 |
| Hpy188I | TCNGA | 3 cut(s) | 274, 412, 516 |
| Hpy188III | TCNNGA | 4 cut(s) | 113, 380, 614, 630 |
| Hpy8I | GTNNAC | 1 cut(s) | 763 |
| HpyAV | CCTTC | 4 cut(s) | 129, 157, 377, 563 |
| HpyCH4III | ACNGT | 2 cut(s) | 401, 579 |
| HpyCH4IV | ACGT | 1 cut(s) | 598 |
| HpyCH4V | TGCA | 4 cut(s) | 68, 233, 286, 709 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 104, 171, 251, 312, 353 |
| HpyF3I | CTNAG | 3 cut(s) | 515, 628, 771 |
| HpySE526I | ACGT | 1 cut(s) | 598 |
| HspAI | GCGC | 5 cut(s) | 179, 209, 243, 342, 732 |
| Kzo9I | GATC | 4 cut(s) | 115, 157, 274, 529 |
| LmnI | GCTCC | 1 cut(s) | 272 |
| Lsp1109I | GCAGC | 4 cut(s) | 353, 356, 701, 736 |
| LweI | GCATC | 3 cut(s) | 254, 490, 574 |
| MaeI | CTAG | 2 cut(s) | 95, 155 |
| MaeII | ACGT | 1 cut(s) | 598 |
| MalI | GATC | 4 cut(s) | 117, 159, 276, 531 |
| MboI | GATC | 4 cut(s) | 115, 157, 274, 529 |
| MboII | GAAGA | 1 cut(s) | 574 |
| MflI | RGATCY | 2 cut(s) | 115, 157 |
| MhlI | GDGCHC | 1 cut(s) | 221 |
| MluCI | AATT | 1 cut(s) | 55 |
| MlyI | GAGTC | 1 cut(s) | 758 |
| MmeI | TCCRAC | 1 cut(s) | 302 |
| MseI | TTAA | 2 cut(s) | 506, 591 |
| MspA1I | CMGCKG | 1 cut(s) | 745 |
| MspCI | CTTAAG | 1 cut(s) | 590 |
| MspI | CCGG | 5 cut(s) | 15, 75, 83, 140, 353 |
| MspR9I | CCNGG | 3 cut(s) | 83, 84, 171 |
| MvaI | CCWGG | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 104, 171, 251, 312, 353 |
| NciI | CCSGG | 2 cut(s) | 83, 84 |
| NdeII | GATC | 4 cut(s) | 115, 157, 274, 529 |
| NlaIV | GGNNCC | 1 cut(s) | 87 |
| NmeAIII | GCCGAG | 3 cut(s) | 200, 318, 746 |
| PfeI | GAWTC | 2 cut(s) | 319, 654 |
| PkrI | GCNGC | 7 cut(s) | 145, 346, 368, 716, 726, 736, 757 |
| PleI | GAGTC | 1 cut(s) | 758 |
| PpsI | GAGTC | 1 cut(s) | 758 |
| PpuMI | RGGWCCY | 1 cut(s) | 86 |
| Psp5II | RGGWCCY | 1 cut(s) | 86 |
| Psp6I | CCWGG | 1 cut(s) | 169 |
| PspFI | CCCAGC | 7 cut(s) | 43, 125, 161, 263, 307, 533, 543 |
| PspGI | CCWGG | 1 cut(s) | 169 |
| PspN4I | GGNNCC | 1 cut(s) | 87 |
| PspPI | GGNCC | 3 cut(s) | 86, 305, 678 |
| PspPPI | RGGWCCY | 1 cut(s) | 86 |
| PsuI | RGATCY | 2 cut(s) | 115, 157 |
| PvuII | CAGCTG | 1 cut(s) | 745 |
| RsaI | GTAC | 3 cut(s) | 298, 395, 551 |
| RsaNI | GTAC | 3 cut(s) | 297, 394, 550 |
| SaqAI | TTAA | 2 cut(s) | 506, 591 |
| SatI | GCNGC | 7 cut(s) | 144, 345, 367, 715, 725, 735, 756 |
| Sau3AI | GATC | 4 cut(s) | 115, 157, 274, 529 |
| Sau96I | GGNCC | 3 cut(s) | 86, 305, 678 |
| SchI | GAGTC | 1 cut(s) | 758 |
| ScrFI | CCNGG | 3 cut(s) | 83, 84, 171 |
| SduI | GDGCHC | 1 cut(s) | 221 |
| SfaNI | GCATC | 3 cut(s) | 254, 490, 574 |
| SfcI | CTRYAG | 1 cut(s) | 182 |
| SinI | GGWCC | 1 cut(s) | 86 |
| SmaI | CCCGGG | 1 cut(s) | 84 |
| SmlI | CTYRAG | 2 cut(s) | 389, 590 |
| SmoI | CTYRAG | 2 cut(s) | 389, 590 |
| Sse9I | AATT | 1 cut(s) | 55 |
| SsiI | CCGC | 5 cut(s) | 143, 658, 735, 755, 758 |
| SspMI | CTAG | 2 cut(s) | 95, 155 |
| StyD4I | CCNGG | 3 cut(s) | 81, 82, 169 |
| TaaI | ACNGT | 2 cut(s) | 401, 579 |
| TaiI | ACGT | 1 cut(s) | 601 |
| TaqI | TCGA | 2 cut(s) | 327, 701 |
| TasI | AATT | 1 cut(s) | 55 |
| TatI | WGTACW | 1 cut(s) | 296 |
| TauI | GCSGC | 3 cut(s) | 146, 737, 758 |
| TfiI | GAWTC | 2 cut(s) | 319, 654 |
| Tru1I | TTAA | 2 cut(s) | 506, 591 |
| Tru9I | TTAA | 2 cut(s) | 506, 591 |
| TscAI | CASTG | 3 cut(s) | 451, 650, 725 |
| TseI | GCWGC | 4 cut(s) | 344, 366, 714, 724 |
| TspDTI | ATGAA | 1 cut(s) | 489 |
| TspMI | CCCGGG | 1 cut(s) | 82 |
| TspRI | CASTG | 3 cut(s) | 451, 650, 725 |
| Vha464I | CTTAAG | 1 cut(s) | 590 |
| VpaK11BI | GGWCC | 1 cut(s) | 86 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 381 |
| XapI | RAATTY | 1 cut(s) | 55 |
| XmaI | CCCGGG | 1 cut(s) | 82 |
| XspI | CTAG | 2 cut(s) | 95, 155 |