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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 305 |
| Acc36I | ACCTGC | 1 cut(s) | 305 |
| AccB1I | GGYRCC | 2 cut(s) | 242, 597 |
| AccBSI | CCGCTC | 1 cut(s) | 173 |
| AccII | CGCG | 3 cut(s) | 87, 178, 373 |
| AciI | CCGC | 7 cut(s) | 85, 103, 155, 171, 176, 373, 736 |
| AclWI | GGATC | 3 cut(s) | 297, 410, 602 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcsI | RAATTY | 1 cut(s) | 802 |
| AcuI | CTGAAG | 1 cut(s) | 617 |
| AcvI | CACGTG | 1 cut(s) | 8 |
| AcyI | GRCGYC | 1 cut(s) | 598 |
| AfaI | GTAC | 1 cut(s) | 464 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 367, 472, 723 |
| AflII | CTTAAG | 1 cut(s) | 668 |
| AflIII | ACRYGT | 1 cut(s) | 777 |
| AgsI | TTSAA | 1 cut(s) | 640 |
| AjiI | CACGTC | 1 cut(s) | 797 |
| AluBI | AGCT | 2 cut(s) | 108, 615 |
| AluI | AGCT | 2 cut(s) | 108, 615 |
| Alw21I | GWGCWC | 1 cut(s) | 83 |
| Alw26I | GTCTC | 1 cut(s) | 77 |
| Alw44I | GTGCAC | 1 cut(s) | 79 |
| AlwI | GGATC | 3 cut(s) | 297, 410, 602 |
| AoxI | GGCC | 4 cut(s) | 57, 350, 356, 374 |
| ApaLI | GTGCAC | 1 cut(s) | 79 |
| ApeKI | GCWGC | 6 cut(s) | 105, 165, 186, 200, 310, 332 |
| ApoI | RAATTY | 1 cut(s) | 802 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 630 |
| AspLEI | GCGC | 4 cut(s) | 89, 342, 373, 600 |
| AspS9I | GGNCC | 2 cut(s) | 357, 554 |
| AsuHPI | GGTGA | 1 cut(s) | 357 |
| AvaII | GGWCC | 1 cut(s) | 554 |
| BaeGI | GKGCMC | 1 cut(s) | 83 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 446, 479 |
| BanI | GGYRCC | 2 cut(s) | 242, 597 |
| BbrPI | CACGTG | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 647 |
| Bbv12I | GWGCWC | 1 cut(s) | 83 |
| BbvI | GCAGC | 6 cut(s) | 117, 177, 187, 198, 319, 322 |
| BccI | CCATC | 5 cut(s) | 26, 286, 403, 530, 545 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 324, 358 |
| BcoDI | GTCTC | 1 cut(s) | 77 |
| BfaI | CTAG | 3 cut(s) | 21, 260, 612 |
| BfmI | CTRYAG | 3 cut(s) | 184, 298, 333 |
| BfoI | RGCGCY | 1 cut(s) | 601 |
| BfrI | CTTAAG | 1 cut(s) | 668 |
| BfuAI | ACCTGC | 1 cut(s) | 305 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 500 |
| BisI | GCNGC | 8 cut(s) | 106, 155, 166, 187, 201, 311, 333, 374 |
| BlsI | GCNGC | 8 cut(s) | 107, 156, 167, 188, 202, 312, 334, 375 |
| Bme18I | GGWCC | 1 cut(s) | 554 |
| BmgBI | CACGTC | 1 cut(s) | 797 |
| BmgT120I | GGNCC | 2 cut(s) | 357, 554 |
| BmiI | GGNNCC | 3 cut(s) | 244, 359, 599 |
| BmsI | GCATC | 3 cut(s) | 218, 223, 652 |
| BpiI | GAAGAC | 1 cut(s) | 647 |
| BpmI | CTGGAG | 2 cut(s) | 59, 124 |
| BpuEI | CTTGAG | 1 cut(s) | 479 |
| BsaAI | YACGTR | 1 cut(s) | 8 |
| BsaHI | GRCGYC | 1 cut(s) | 598 |
| BsaI | GGTCTC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 1 cut(s) | 353 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 367, 472, 723 |
| Bse118I | RCCGGY | 1 cut(s) | 367 |
| Bse1I | ACTGG | 2 cut(s) | 76, 141 |
| Bse3DI | GCAATG | 1 cut(s) | 408 |
| BseDI | CCNNGG | 1 cut(s) | 353 |
| BseGI | GGATG | 2 cut(s) | 99, 667 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 367, 472, 723 |
| BseMI | GCAATG | 1 cut(s) | 408 |
| BseMII | CTCAG | 1 cut(s) | 462 |
| BseNI | ACTGG | 2 cut(s) | 76, 141 |
| BseSI | GKGCMC | 1 cut(s) | 83 |
| BseXI | GCAGC | 6 cut(s) | 117, 177, 187, 198, 319, 322 |
| BseYI | CCCAGC | 2 cut(s) | 306, 621 |
| Bsh1236I | CGCG | 3 cut(s) | 87, 178, 373 |
| BshFI | GGCC | 4 cut(s) | 59, 352, 358, 376 |
| BshNI | GGYRCC | 2 cut(s) | 242, 597 |
| BsiHKAI | GWGCWC | 1 cut(s) | 83 |
| BsiSI | CCGG | 2 cut(s) | 60, 368 |
| BslFI | GGGAC | 2 cut(s) | 521, 687 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 367, 472, 723 |
| BsmAI | GTCTC | 1 cut(s) | 77 |
| BsmFI | GGGAC | 2 cut(s) | 521, 687 |
| BsnI | GGCC | 4 cut(s) | 59, 352, 358, 376 |
| Bso31I | GGTCTC | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 1 cut(s) | 83 |
| Bsp143I | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| BspACI | CCGC | 7 cut(s) | 85, 103, 155, 171, 176, 373, 736 |
| BspANI | GGCC | 4 cut(s) | 59, 352, 358, 376 |
| BspCNI | CTCAG | 1 cut(s) | 461 |
| BspFNI | CGCG | 3 cut(s) | 87, 178, 373 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 3 cut(s) | 244, 359, 599 |
| BspMAI | CTGCAG | 3 cut(s) | 188, 302, 337 |
| BspMI | ACCTGC | 1 cut(s) | 305 |
| BspPI | GGATC | 3 cut(s) | 297, 410, 602 |
| BspT107I | GGYRCC | 2 cut(s) | 242, 597 |
| BspTI | CTTAAG | 1 cut(s) | 668 |
| BspTNI | GGTCTC | 1 cut(s) | 77 |
| BsrBI | CCGCTC | 1 cut(s) | 173 |
| BsrDI | GCAATG | 1 cut(s) | 408 |
| BsrFI | RCCGGY | 1 cut(s) | 367 |
| BsrI | ACTGG | 2 cut(s) | 76, 141 |
| BssAI | RCCGGY | 1 cut(s) | 367 |
| BssECI | CCNNGG | 1 cut(s) | 353 |
| BssMI | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| BssNI | GRCGYC | 1 cut(s) | 598 |
| Bst4CI | ACNGT | 4 cut(s) | 470, 558, 657, 718 |
| BstACI | GRCGYC | 1 cut(s) | 598 |
| BstAFI | CTTAAG | 1 cut(s) | 668 |
| BstBAI | YACGTR | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 5 cut(s) | 180, 184, 315, 344, 740 |
| BstDEI | CTNAG | 2 cut(s) | 429, 448 |
| BstF5I | GGATG | 2 cut(s) | 99, 667 |
| BstFNI | CGCG | 3 cut(s) | 87, 178, 373 |
| BstH2I | RGCGCY | 1 cut(s) | 601 |
| BstHHI | GCGC | 4 cut(s) | 89, 342, 373, 600 |
| BstKTI | GATC | 6 cut(s) | 67, 259, 305, 325, 418, 610 |
| BstMAI | GTCTC | 1 cut(s) | 77 |
| BstMBI | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 206, 500 |
| BstNSI | RCATGY | 1 cut(s) | 781 |
| BstSFI | CTRYAG | 3 cut(s) | 184, 298, 333 |
| BstSLI | GKGCMC | 1 cut(s) | 83 |
| BstUI | CGCG | 3 cut(s) | 87, 178, 373 |
| BstV1I | GCAGC | 6 cut(s) | 117, 177, 187, 198, 319, 322 |
| BstV2I | GAAGAC | 1 cut(s) | 647 |
| BstX2I | RGATCY | 1 cut(s) | 302 |
| BstYI | RGATCY | 1 cut(s) | 302 |
| BsuRI | GGCC | 4 cut(s) | 59, 352, 358, 376 |
| BtgZI | GCGATG | 2 cut(s) | 264, 313 |
| BtrI | CACGTC | 1 cut(s) | 797 |
| BtsCI | GGATG | 2 cut(s) | 99, 667 |
| BtsI | GCAGTG | 2 cut(s) | 342, 513 |
| BtsIMutI | CAGTG | 5 cut(s) | 83, 342, 513, 534, 728 |
| BveI | ACCTGC | 1 cut(s) | 305 |
| Cac8I | GCNNGC | 5 cut(s) | 180, 184, 315, 344, 740 |
| CciI | TCATGA | 1 cut(s) | 691 |
| CfoI | GCGC | 4 cut(s) | 89, 342, 373, 600 |
| Cfr10I | RCCGGY | 1 cut(s) | 367 |
| Cfr13I | GGNCC | 2 cut(s) | 357, 554 |
| Csp6I | GTAC | 1 cut(s) | 463 |
| CviAII | CATG | 2 cut(s) | 692, 778 |
| CviQI | GTAC | 1 cut(s) | 463 |
| DdeI | CTNAG | 2 cut(s) | 429, 448 |
| DinI | GGCGCC | 1 cut(s) | 599 |
| DpnI | GATC | 6 cut(s) | 66, 258, 304, 324, 417, 609 |
| DpnII | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| Eco31I | GGTCTC | 1 cut(s) | 77 |
| Eco47I | GGWCC | 1 cut(s) | 554 |
| Eco57I | CTGAAG | 1 cut(s) | 617 |
| Eco72I | CACGTG | 1 cut(s) | 8 |
| EgeI | GGCGCC | 1 cut(s) | 599 |
| EheI | GGCGCC | 1 cut(s) | 599 |
| FaeI | CATG | 2 cut(s) | 695, 781 |
| FaiI | YATR | 3 cut(s) | 603, 693, 779 |
| FaqI | GGGAC | 2 cut(s) | 521, 687 |
| FatI | CATG | 2 cut(s) | 691, 777 |
| FauI | CCCGC | 2 cut(s) | 92, 178 |
| Fnu4HI | GCNGC | 8 cut(s) | 106, 155, 166, 187, 201, 311, 333, 374 |
| FokI | GGATG | 2 cut(s) | 86, 674 |
| Fsp4HI | GCNGC | 8 cut(s) | 106, 155, 166, 187, 201, 311, 333, 374 |
| FspBI | CTAG | 3 cut(s) | 21, 260, 612 |
| GlaI | GCGC | 4 cut(s) | 88, 341, 372, 599 |
| GluI | GCNGC | 8 cut(s) | 106, 155, 166, 187, 201, 311, 333, 374 |
| GsaI | CCCAGC | 2 cut(s) | 310, 625 |
| GsuI | CTGGAG | 2 cut(s) | 59, 124 |
| HaeII | RGCGCY | 1 cut(s) | 601 |
| HaeIII | GGCC | 4 cut(s) | 59, 352, 358, 376 |
| HapII | CCGG | 2 cut(s) | 60, 368 |
| HhaI | GCGC | 4 cut(s) | 89, 342, 373, 600 |
| Hin1I | GRCGYC | 1 cut(s) | 598 |
| Hin1II | CATG | 2 cut(s) | 695, 781 |
| Hin6I | GCGC | 4 cut(s) | 87, 340, 371, 598 |
| HinP1I | GCGC | 4 cut(s) | 87, 340, 371, 598 |
| HinfI | GANTC | 1 cut(s) | 446 |
| HpaII | CCGG | 2 cut(s) | 60, 368 |
| HphI | GGTGA | 1 cut(s) | 357 |
| Hpy166II | GTNNAC | 1 cut(s) | 81 |
| Hpy188I | TCNGA | 3 cut(s) | 322, 451, 562 |
| Hpy188III | TCNNGA | 3 cut(s) | 46, 260, 692 |
| Hpy8I | GTNNAC | 1 cut(s) | 81 |
| HpyAV | CCTTC | 2 cut(s) | 129, 641 |
| HpyCH4III | ACNGT | 4 cut(s) | 470, 558, 657, 718 |
| HpyCH4IV | ACGT | 3 cut(s) | 7, 676, 796 |
| HpyCH4V | TGCA | 5 cut(s) | 81, 186, 209, 300, 335 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 206, 500 |
| HpyF3I | CTNAG | 2 cut(s) | 429, 448 |
| HpySE526I | ACGT | 3 cut(s) | 7, 676, 796 |
| Hsp92I | GRCGYC | 1 cut(s) | 598 |
| Hsp92II | CATG | 2 cut(s) | 695, 781 |
| HspAI | GCGC | 4 cut(s) | 87, 340, 371, 598 |
| KasI | GGCGCC | 1 cut(s) | 597 |
| Kzo9I | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| LmnI | GCTCC | 2 cut(s) | 178, 708 |
| Lsp1109I | GCAGC | 6 cut(s) | 117, 177, 187, 198, 319, 322 |
| LweI | GCATC | 3 cut(s) | 218, 223, 652 |
| MaeI | CTAG | 3 cut(s) | 21, 260, 612 |
| MaeII | ACGT | 3 cut(s) | 7, 676, 796 |
| MaeIII | GTNAC | 1 cut(s) | 3 |
| MalI | GATC | 6 cut(s) | 66, 258, 304, 324, 417, 609 |
| MbiI | CCGCTC | 1 cut(s) | 173 |
| MboI | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| MboII | GAAGA | 3 cut(s) | 105, 390, 652 |
| MflI | RGATCY | 1 cut(s) | 302 |
| MhlI | GDGCHC | 1 cut(s) | 83 |
| MluCI | AATT | 4 cut(s) | 12, 50, 228, 802 |
| Mly113I | GGCGCC | 1 cut(s) | 598 |
| MlyI | GAGTC | 1 cut(s) | 440 |
| MmeI | TCCRAC | 1 cut(s) | 443 |
| MroXI | GAANNNNTTC | 1 cut(s) | 630 |
| MseI | TTAA | 3 cut(s) | 584, 669, 767 |
| MspA1I | CMGCKG | 1 cut(s) | 108 |
| MspCI | CTTAAG | 1 cut(s) | 668 |
| MspI | CCGG | 2 cut(s) | 60, 368 |
| MvnI | CGCG | 3 cut(s) | 87, 178, 373 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 206, 500 |
| NarI | GGCGCC | 1 cut(s) | 598 |
| NdeII | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| NlaIII | CATG | 2 cut(s) | 695, 781 |
| NlaIV | GGNNCC | 3 cut(s) | 244, 359, 599 |
| NmeAIII | GCCGAG | 2 cut(s) | 219, 334 |
| NmuCI | GTSAC | 1 cut(s) | 3 |
| NspI | RCATGY | 1 cut(s) | 781 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PaqCI | CACCTGC | 1 cut(s) | 305 |
| PciI | ACATGT | 1 cut(s) | 777 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 630 |
| PkrI | GCNGC | 8 cut(s) | 107, 156, 167, 188, 202, 312, 334, 375 |
| PleI | GAGTC | 1 cut(s) | 440 |
| PluTI | GGCGCC | 1 cut(s) | 601 |
| PmaCI | CACGTG | 1 cut(s) | 8 |
| PmlI | CACGTG | 1 cut(s) | 8 |
| PpsI | GAGTC | 1 cut(s) | 440 |
| Ppu21I | YACGTR | 1 cut(s) | 8 |
| PscI | ACATGT | 1 cut(s) | 777 |
| PspCI | CACGTG | 1 cut(s) | 8 |
| PspFI | CCCAGC | 2 cut(s) | 306, 621 |
| PspN4I | GGNNCC | 3 cut(s) | 244, 359, 599 |
| PspPI | GGNCC | 2 cut(s) | 357, 554 |
| PstI | CTGCAG | 3 cut(s) | 188, 302, 337 |
| PsuI | RGATCY | 1 cut(s) | 302 |
| PvuII | CAGCTG | 1 cut(s) | 108 |
| RsaI | GTAC | 1 cut(s) | 464 |
| RsaNI | GTAC | 1 cut(s) | 463 |
| SaqAI | TTAA | 3 cut(s) | 584, 669, 767 |
| SatI | GCNGC | 8 cut(s) | 106, 155, 166, 187, 201, 311, 333, 374 |
| Sau3AI | GATC | 6 cut(s) | 64, 256, 302, 322, 415, 607 |
| Sau96I | GGNCC | 2 cut(s) | 357, 554 |
| SchI | GAGTC | 1 cut(s) | 440 |
| SduI | GDGCHC | 1 cut(s) | 83 |
| SfaNI | GCATC | 3 cut(s) | 218, 223, 652 |
| SfcI | CTRYAG | 3 cut(s) | 184, 298, 333 |
| SfoI | GGCGCC | 1 cut(s) | 599 |
| SgrAI | CRCCGGYG | 1 cut(s) | 367 |
| SinI | GGWCC | 1 cut(s) | 554 |
| SmlI | CTYRAG | 2 cut(s) | 458, 668 |
| SmoI | CTYRAG | 2 cut(s) | 458, 668 |
| Sse9I | AATT | 4 cut(s) | 12, 50, 228, 802 |
| SsiI | CCGC | 7 cut(s) | 85, 103, 155, 171, 176, 373, 736 |
| SspDI | GGCGCC | 1 cut(s) | 597 |
| SspMI | CTAG | 3 cut(s) | 21, 260, 612 |
| TaaI | ACNGT | 4 cut(s) | 470, 558, 657, 718 |
| TaiI | ACGT | 3 cut(s) | 10, 679, 799 |
| TaqI | TCGA | 1 cut(s) | 424 |
| TasI | AATT | 4 cut(s) | 12, 50, 228, 802 |
| TauI | GCSGC | 2 cut(s) | 157, 376 |
| Tru1I | TTAA | 3 cut(s) | 584, 669, 767 |
| Tru9I | TTAA | 3 cut(s) | 584, 669, 767 |
| TscAI | CASTG | 5 cut(s) | 83, 342, 520, 541, 728 |
| TseFI | GTSAC | 1 cut(s) | 3 |
| TseI | GCWGC | 6 cut(s) | 105, 165, 186, 200, 310, 332 |
| Tsp45I | GTSAC | 1 cut(s) | 3 |
| TspDTI | ATGAA | 3 cut(s) | 88, 680, 744 |
| TspGWI | ACGGA | 1 cut(s) | 468 |
| TspRI | CASTG | 5 cut(s) | 83, 342, 520, 541, 728 |
| Vha464I | CTTAAG | 1 cut(s) | 668 |
| VneI | GTGCAC | 1 cut(s) | 79 |
| VpaK11BI | GGWCC | 1 cut(s) | 554 |
| XapI | RAATTY | 1 cut(s) | 802 |
| XbaI | TCTAGA | 1 cut(s) | 259 |
| XceI | RCATGY | 1 cut(s) | 781 |
| XmnI | GAANNNNTTC | 1 cut(s) | 630 |
| XspI | CTAG | 3 cut(s) | 21, 260, 612 |