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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 68, 526 |
| AclWI | GGATC | 3 cut(s) | 195, 209, 392 |
| AcoI | YGGCCR | 2 cut(s) | 27, 158 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AcuI | CTGAAG | 1 cut(s) | 407 |
| AfaI | GTAC | 2 cut(s) | 263, 419 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 106, 200, 271, 412 |
| AflII | CTTAAG | 1 cut(s) | 458 |
| AflIII | ACRYGT | 1 cut(s) | 567 |
| AgsI | TTSAA | 2 cut(s) | 430, 559 |
| AluBI | AGCT | 1 cut(s) | 166 |
| AluI | AGCT | 1 cut(s) | 166 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AlwI | GGATC | 3 cut(s) | 195, 209, 392 |
| AoxI | GGCC | 3 cut(s) | 27, 158, 224 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| AspLEI | GCGC | 2 cut(s) | 89, 576 |
| AspS9I | GGNCC | 2 cut(s) | 33, 197 |
| AsuC2I | CCSGG | 3 cut(s) | 31, 195, 201 |
| AsuHPI | GGTGA | 1 cut(s) | 370 |
| AvaII | GGWCC | 2 cut(s) | 33, 197 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 245, 278 |
| BbsI | GAAGAC | 1 cut(s) | 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BccI | CCATC | 3 cut(s) | 150, 202, 273 |
| BcnI | CCSGG | 3 cut(s) | 31, 195, 201 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BfaI | CTAG | 1 cut(s) | 90 |
| BfoI | RGCGCY | 1 cut(s) | 90 |
| BfrI | CTTAAG | 1 cut(s) | 458 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| BisI | GCNGC | 1 cut(s) | 68 |
| BlsI | GCNGC | 1 cut(s) | 69 |
| Bme1390I | CCNGG | 3 cut(s) | 31, 195, 201 |
| Bme18I | GGWCC | 2 cut(s) | 33, 197 |
| BmgT120I | GGNCC | 2 cut(s) | 33, 197 |
| BmiI | GGNNCC | 2 cut(s) | 34, 198 |
| BmrFI | CCNGG | 3 cut(s) | 31, 195, 201 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BpiI | GAAGAC | 1 cut(s) | 437 |
| BpmI | CTGGAG | 1 cut(s) | 172 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BpuMI | CCSGG | 3 cut(s) | 31, 195, 201 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 106, 200, 271, 412 |
| Bse1I | ACTGG | 1 cut(s) | 507 |
| BseGI | GGATG | 2 cut(s) | 213, 457 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 106, 200, 271, 412 |
| BseMII | CTCAG | 2 cut(s) | 68, 261 |
| BseNI | ACTGG | 1 cut(s) | 507 |
| BseRI | GAGGAG | 2 cut(s) | 122, 134 |
| BseX3I | CGGCCG | 1 cut(s) | 27 |
| BseYI | CCCAGC | 2 cut(s) | 401, 411 |
| BsgI | GTGCAG | 1 cut(s) | 35 |
| Bsh1285I | CGRYCG | 1 cut(s) | 30 |
| BshFI | GGCC | 3 cut(s) | 29, 160, 226 |
| BsiEI | CGRYCG | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsiSI | CCGG | 6 cut(s) | 11, 26, 30, 161, 194, 200 |
| BslFI | GGGAC | 1 cut(s) | 477 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 106, 200, 271, 412 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsmFI | GGGAC | 1 cut(s) | 477 |
| BsnI | GGCC | 3 cut(s) | 29, 160, 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp143I | GATC | 3 cut(s) | 187, 214, 397 |
| BspACI | CCGC | 2 cut(s) | 68, 526 |
| BspANI | GGCC | 3 cut(s) | 29, 160, 226 |
| BspCNI | CTCAG | 2 cut(s) | 69, 260 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 2 cut(s) | 34, 198 |
| BspPI | GGATC | 3 cut(s) | 195, 209, 392 |
| BspTI | CTTAAG | 1 cut(s) | 458 |
| BsrI | ACTGG | 1 cut(s) | 507 |
| BssMI | GATC | 3 cut(s) | 187, 214, 397 |
| Bst4CI | ACNGT | 1 cut(s) | 447 |
| BstAFI | CTTAAG | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 2 cut(s) | 168, 530 |
| BstDEI | CTNAG | 3 cut(s) | 77, 247, 383 |
| BstF5I | GGATG | 2 cut(s) | 213, 457 |
| BstH2I | RGCGCY | 1 cut(s) | 90 |
| BstHHI | GCGC | 2 cut(s) | 89, 576 |
| BstKTI | GATC | 3 cut(s) | 190, 217, 400 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 3 cut(s) | 187, 214, 397 |
| BstMCI | CGRYCG | 1 cut(s) | 30 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 299 |
| BstNSI | RCATGY | 1 cut(s) | 571 |
| BstSCI | CCNGG | 3 cut(s) | 29, 193, 199 |
| BstV2I | GAAGAC | 1 cut(s) | 437 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| BstZI | CGGCCG | 1 cut(s) | 27 |
| BsuRI | GGCC | 3 cut(s) | 29, 160, 226 |
| BtsCI | GGATG | 2 cut(s) | 213, 457 |
| BtsIMutI | CAGTG | 2 cut(s) | 74, 518 |
| Cac8I | GCNNGC | 2 cut(s) | 168, 530 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 2 cut(s) | 89, 576 |
| Cfr13I | GGNCC | 2 cut(s) | 33, 197 |
| Csp6I | GTAC | 2 cut(s) | 262, 418 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 580, 615 |
| CviAII | CATG | 2 cut(s) | 482, 568 |
| CviJI | RGCY | 8 cut(s) | 29, 57, 160, 166, 212, 226, 405, 506 |
| CviKI_1 | RGCY | 8 cut(s) | 29, 57, 160, 166, 212, 226, 405, 506 |
| CviQI | GTAC | 2 cut(s) | 262, 418 |
| DdeI | CTNAG | 3 cut(s) | 77, 247, 383 |
| DpnI | GATC | 3 cut(s) | 189, 216, 399 |
| DpnII | GATC | 3 cut(s) | 187, 214, 397 |
| EaeI | YGGCCR | 2 cut(s) | 27, 158 |
| EagI | CGGCCG | 1 cut(s) | 27 |
| EclXI | CGGCCG | 1 cut(s) | 27 |
| Eco47I | GGWCC | 2 cut(s) | 33, 197 |
| Eco52I | CGGCCG | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 1 cut(s) | 407 |
| FaeI | CATG | 2 cut(s) | 485, 571 |
| FaiI | YATR | 5 cut(s) | 393, 483, 540, 569, 625 |
| FaqI | GGGAC | 1 cut(s) | 477 |
| FatI | CATG | 2 cut(s) | 481, 567 |
| Fnu4HI | GCNGC | 1 cut(s) | 68 |
| FokI | GGATG | 2 cut(s) | 220, 464 |
| Fsp4HI | GCNGC | 1 cut(s) | 68 |
| FspBI | CTAG | 1 cut(s) | 90 |
| GlaI | GCGC | 2 cut(s) | 88, 575 |
| GluI | GCNGC | 1 cut(s) | 68 |
| GsaI | CCCAGC | 2 cut(s) | 405, 415 |
| GsuI | CTGGAG | 1 cut(s) | 172 |
| HaeII | RGCGCY | 1 cut(s) | 90 |
| HaeIII | GGCC | 3 cut(s) | 29, 160, 226 |
| HapII | CCGG | 6 cut(s) | 11, 26, 30, 161, 194, 200 |
| HhaI | GCGC | 2 cut(s) | 89, 576 |
| Hin1II | CATG | 2 cut(s) | 485, 571 |
| Hin6I | GCGC | 2 cut(s) | 87, 574 |
| HinP1I | GCGC | 2 cut(s) | 87, 574 |
| HinfI | GANTC | 3 cut(s) | 81, 245, 522 |
| HpaII | CCGG | 6 cut(s) | 11, 26, 30, 161, 194, 200 |
| HphI | GGTGA | 1 cut(s) | 370 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 187, 207, 250 |
| Hpy188III | TCNNGA | 3 cut(s) | 135, 482, 497 |
| Hpy99I | CGWCG | 1 cut(s) | 150 |
| HpyAV | CCTTC | 3 cut(s) | 68, 245, 431 |
| HpyCH4III | ACNGT | 1 cut(s) | 447 |
| HpyCH4IV | ACGT | 2 cut(s) | 129, 466 |
| HpyCH4V | TGCA | 1 cut(s) | 52 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 299 |
| HpyF3I | CTNAG | 3 cut(s) | 77, 247, 383 |
| HpySE526I | ACGT | 2 cut(s) | 129, 466 |
| Hsp92II | CATG | 2 cut(s) | 485, 571 |
| HspAI | GCGC | 2 cut(s) | 87, 574 |
| Kzo9I | GATC | 3 cut(s) | 187, 214, 397 |
| LmnI | GCTCC | 2 cut(s) | 109, 163 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 1 cut(s) | 90 |
| MaeII | ACGT | 2 cut(s) | 129, 466 |
| MalI | GATC | 3 cut(s) | 189, 216, 399 |
| MboI | GATC | 3 cut(s) | 187, 214, 397 |
| MboII | GAAGA | 1 cut(s) | 442 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MluCI | AATT | 2 cut(s) | 230, 592 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MmeI | TCCRAC | 3 cut(s) | 165, 185, 242 |
| MnlI | CCTC | 3 cut(s) | 100, 112, 115 |
| MseI | TTAA | 3 cut(s) | 324, 374, 459 |
| MspCI | CTTAAG | 1 cut(s) | 458 |
| MspI | CCGG | 6 cut(s) | 11, 26, 30, 161, 194, 200 |
| MspR9I | CCNGG | 3 cut(s) | 31, 195, 201 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 299 |
| NciI | CCSGG | 3 cut(s) | 31, 195, 201 |
| NdeII | GATC | 3 cut(s) | 187, 214, 397 |
| NlaIII | CATG | 2 cut(s) | 485, 571 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 198 |
| NmeAIII | GCCGAG | 1 cut(s) | 202 |
| NspI | RCATGY | 1 cut(s) | 571 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PciI | ACATGT | 1 cut(s) | 567 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 122 |
| PfeI | GAWTC | 2 cut(s) | 81, 522 |
| PkrI | GCNGC | 1 cut(s) | 69 |
| PleI | GAGTC | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 239 |
| PscI | ACATGT | 1 cut(s) | 567 |
| PspFI | CCCAGC | 2 cut(s) | 401, 411 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 198 |
| PspPI | GGNCC | 2 cut(s) | 33, 197 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| RsaI | GTAC | 2 cut(s) | 263, 419 |
| RsaNI | GTAC | 2 cut(s) | 262, 418 |
| SaqAI | TTAA | 3 cut(s) | 324, 374, 459 |
| SatI | GCNGC | 1 cut(s) | 68 |
| Sau3AI | GATC | 3 cut(s) | 187, 214, 397 |
| Sau96I | GGNCC | 2 cut(s) | 33, 197 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 3 cut(s) | 31, 195, 201 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SetI | ASST | 5 cut(s) | 132, 168, 360, 423, 469 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| SinI | GGWCC | 2 cut(s) | 33, 197 |
| SmlI | CTYRAG | 2 cut(s) | 257, 458 |
| SmoI | CTYRAG | 2 cut(s) | 257, 458 |
| Sse9I | AATT | 2 cut(s) | 230, 592 |
| SsiI | CCGC | 2 cut(s) | 68, 526 |
| SspMI | CTAG | 1 cut(s) | 90 |
| StyD4I | CCNGG | 3 cut(s) | 29, 193, 199 |
| TaaI | ACNGT | 1 cut(s) | 447 |
| TaiI | ACGT | 2 cut(s) | 132, 469 |
| TasI | AATT | 2 cut(s) | 230, 592 |
| TauI | GCSGC | 1 cut(s) | 70 |
| TfiI | GAWTC | 2 cut(s) | 81, 522 |
| Tru1I | TTAA | 3 cut(s) | 324, 374, 459 |
| Tru9I | TTAA | 3 cut(s) | 324, 374, 459 |
| TscAI | CASTG | 2 cut(s) | 81, 518 |
| TspDTI | ATGAA | 4 cut(s) | 17, 357, 470, 620 |
| TspGWI | ACGGA | 1 cut(s) | 131 |
| TspRI | CASTG | 2 cut(s) | 81, 518 |
| Vha464I | CTTAAG | 1 cut(s) | 458 |
| VpaK11BI | GGWCC | 2 cut(s) | 33, 197 |
| XapI | RAATTY | 1 cut(s) | 230 |
| XceI | RCATGY | 1 cut(s) | 571 |
| XspI | CTAG | 1 cut(s) | 90 |