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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 319, 416 |
| AclWI | GGATC | 2 cut(s) | 2, 185 |
| AcuI | CTGAAG | 1 cut(s) | 200 |
| AfaI | GTAC | 2 cut(s) | 56, 212 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 205, 402 |
| AflIII | ACRYGT | 1 cut(s) | 360 |
| AgsI | TTSAA | 2 cut(s) | 223, 352 |
| AhlI | ACTAGT | 1 cut(s) | 295 |
| AjnI | CCWGG | 1 cut(s) | 395 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 2 cut(s) | 2, 185 |
| AoxI | GGCC | 3 cut(s) | 390, 407, 442 |
| ApeKI | GCWGC | 2 cut(s) | 419, 432 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 2 cut(s) | 391, 442 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AxyI | CCTNAGG | 3 cut(s) | 411, 424, 438 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| BbvI | GCAGC | 2 cut(s) | 406, 444 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 397 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BcuI | ACTAGT | 1 cut(s) | 295 |
| BfaI | CTAG | 2 cut(s) | 195, 296 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 441 |
| BisI | GCNGC | 3 cut(s) | 417, 420, 433 |
| BlsI | GCNGC | 3 cut(s) | 418, 421, 434 |
| Bme1390I | CCNGG | 1 cut(s) | 397 |
| BmgT120I | GGNCC | 2 cut(s) | 391, 442 |
| BmiI | GGNNCC | 2 cut(s) | 393, 401 |
| BmrFI | CCNGG | 1 cut(s) | 397 |
| BmsI | GCATC | 2 cut(s) | 151, 235 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaI | GGTCTC | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 205, 402 |
| Bse118I | RCCGGY | 2 cut(s) | 402, 444 |
| Bse21I | CCTNAGG | 3 cut(s) | 411, 424, 438 |
| BseBI | CCWGG | 1 cut(s) | 397 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 205, 402 |
| BseMII | CTCAG | 6 cut(s) | 12, 54, 167, 402, 438, 452 |
| BseXI | GCAGC | 2 cut(s) | 406, 444 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 3 cut(s) | 392, 409, 444 |
| BsiSI | CCGG | 2 cut(s) | 403, 445 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 205, 402 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsnI | GGCC | 3 cut(s) | 392, 409, 444 |
| Bso31I | GGTCTC | 1 cut(s) | 73 |
| Bsp143I | GATC | 2 cut(s) | 7, 190 |
| BspACI | CCGC | 2 cut(s) | 319, 416 |
| BspANI | GGCC | 3 cut(s) | 392, 409, 444 |
| BspCNI | CTCAG | 6 cut(s) | 13, 53, 168, 403, 437, 451 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 2 cut(s) | 393, 401 |
| BspPI | GGATC | 2 cut(s) | 2, 185 |
| BspTNI | GGTCTC | 1 cut(s) | 73 |
| BsrFI | RCCGGY | 2 cut(s) | 402, 444 |
| BssAI | RCCGGY | 2 cut(s) | 402, 444 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 2 cut(s) | 7, 190 |
| Bst2UI | CCWGG | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 2 cut(s) | 323, 446 |
| BstDEI | CTNAG | 6 cut(s) | 21, 40, 176, 411, 424, 438 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 2 cut(s) | 10, 193 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 2 cut(s) | 7, 190 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 441, 450 |
| BstNI | CCWGG | 1 cut(s) | 397 |
| BstNSI | RCATGY | 1 cut(s) | 364 |
| BstSCI | CCNGG | 1 cut(s) | 395 |
| BstV1I | GCAGC | 2 cut(s) | 406, 444 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| Bsu36I | CCTNAGG | 3 cut(s) | 411, 424, 438 |
| BsuRI | GGCC | 3 cut(s) | 392, 409, 444 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 311 |
| Cac8I | GCNNGC | 2 cut(s) | 323, 446 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr10I | RCCGGY | 2 cut(s) | 402, 444 |
| Cfr13I | GGNCC | 2 cut(s) | 391, 442 |
| Csp6I | GTAC | 2 cut(s) | 55, 211 |
| CviAII | CATG | 2 cut(s) | 275, 361 |
| CviJI | RGCY | 9 cut(s) | 5, 198, 392, 402, 409, 419, 435, 444, 448 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 198, 392, 402, 409, 419, 435, 444, 448 |
| CviQI | GTAC | 2 cut(s) | 55, 211 |
| DdeI | CTNAG | 6 cut(s) | 21, 40, 176, 411, 424, 438 |
| DpnI | GATC | 2 cut(s) | 9, 192 |
| DpnII | GATC | 2 cut(s) | 7, 190 |
| Eco31I | GGTCTC | 1 cut(s) | 73 |
| Eco57I | CTGAAG | 1 cut(s) | 200 |
| Eco81I | CCTNAGG | 3 cut(s) | 411, 424, 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 391 |
| EcoRII | CCWGG | 1 cut(s) | 395 |
| FaeI | CATG | 2 cut(s) | 278, 364 |
| FaiI | YATR | 7 cut(s) | 77, 186, 276, 333, 362, 381, 460 |
| FatI | CATG | 2 cut(s) | 274, 360 |
| Fnu4HI | GCNGC | 3 cut(s) | 417, 420, 433 |
| FokI | GGATG | 1 cut(s) | 257 |
| Fsp4HI | GCNGC | 3 cut(s) | 417, 420, 433 |
| FspBI | CTAG | 2 cut(s) | 195, 296 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GluI | GCNGC | 3 cut(s) | 417, 420, 433 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeIII | GGCC | 3 cut(s) | 392, 409, 444 |
| HapII | CCGG | 2 cut(s) | 403, 445 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1II | CATG | 2 cut(s) | 278, 364 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HinfI | GANTC | 2 cut(s) | 38, 315 |
| HpaII | CCGG | 2 cut(s) | 403, 445 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 177 |
| Hpy188III | TCNNGA | 1 cut(s) | 275 |
| HpyAV | CCTTC | 1 cut(s) | 224 |
| HpyCH4IV | ACGT | 1 cut(s) | 259 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 441, 450 |
| HpyF3I | CTNAG | 6 cut(s) | 21, 40, 176, 411, 424, 438 |
| HpySE526I | ACGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 2 cut(s) | 278, 364 |
| HspAI | GCGC | 1 cut(s) | 367 |
| KroI | GCCGGC | 1 cut(s) | 444 |
| KroNI | GCCGGC | 1 cut(s) | 446 |
| Kzo9I | GATC | 2 cut(s) | 7, 190 |
| LmnI | GCTCC | 1 cut(s) | 399 |
| Lsp1109I | GCAGC | 2 cut(s) | 406, 444 |
| LweI | GCATC | 2 cut(s) | 151, 235 |
| MaeI | CTAG | 2 cut(s) | 195, 296 |
| MaeII | ACGT | 1 cut(s) | 259 |
| MalI | GATC | 2 cut(s) | 9, 192 |
| MboI | GATC | 2 cut(s) | 7, 190 |
| MboII | GAAGA | 1 cut(s) | 235 |
| MluCI | AATT | 1 cut(s) | 236 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 6 cut(s) | 134, 171, 382, 406, 433, 447 |
| MroNI | GCCGGC | 1 cut(s) | 444 |
| MseI | TTAA | 2 cut(s) | 167, 252 |
| MspI | CCGG | 2 cut(s) | 403, 445 |
| MspR9I | CCNGG | 1 cut(s) | 397 |
| MvaI | CCWGG | 1 cut(s) | 397 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 441, 450 |
| NaeI | GCCGGC | 1 cut(s) | 446 |
| NdeII | GATC | 2 cut(s) | 7, 190 |
| NgoMIV | GCCGGC | 1 cut(s) | 444 |
| NlaIII | CATG | 2 cut(s) | 278, 364 |
| NlaIV | GGNNCC | 2 cut(s) | 393, 401 |
| NspI | RCATGY | 1 cut(s) | 364 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PciI | ACATGT | 1 cut(s) | 360 |
| PdiI | GCCGGC | 1 cut(s) | 446 |
| PfeI | GAWTC | 1 cut(s) | 315 |
| PkrI | GCNGC | 3 cut(s) | 418, 421, 434 |
| PleI | GAGTC | 1 cut(s) | 32 |
| PpsI | GAGTC | 1 cut(s) | 32 |
| PscI | ACATGT | 1 cut(s) | 360 |
| Psp6I | CCWGG | 1 cut(s) | 395 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 2 cut(s) | 393, 401 |
| PspPI | GGNCC | 2 cut(s) | 391, 442 |
| RsaI | GTAC | 2 cut(s) | 56, 212 |
| RsaNI | GTAC | 2 cut(s) | 55, 211 |
| SaqAI | TTAA | 2 cut(s) | 167, 252 |
| SatI | GCNGC | 3 cut(s) | 417, 420, 433 |
| Sau3AI | GATC | 2 cut(s) | 7, 190 |
| Sau96I | GGNCC | 2 cut(s) | 391, 442 |
| SchI | GAGTC | 1 cut(s) | 32 |
| ScrFI | CCNGG | 1 cut(s) | 397 |
| SetI | ASST | 7 cut(s) | 22, 126, 153, 216, 262, 342, 430 |
| SfaNI | GCATC | 2 cut(s) | 151, 235 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| SpeI | ACTAGT | 1 cut(s) | 295 |
| Sse9I | AATT | 1 cut(s) | 236 |
| SsiI | CCGC | 2 cut(s) | 319, 416 |
| SspMI | CTAG | 2 cut(s) | 195, 296 |
| StyD4I | CCNGG | 1 cut(s) | 395 |
| TaiI | ACGT | 1 cut(s) | 262 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 1 cut(s) | 236 |
| TauI | GCSGC | 1 cut(s) | 419 |
| TfiI | GAWTC | 1 cut(s) | 315 |
| Tru1I | TTAA | 2 cut(s) | 167, 252 |
| Tru9I | TTAA | 2 cut(s) | 167, 252 |
| TscAI | CASTG | 2 cut(s) | 112, 311 |
| TseI | GCWGC | 2 cut(s) | 419, 432 |
| TspDTI | ATGAA | 2 cut(s) | 150, 263 |
| TspGWI | ACGGA | 2 cut(s) | 60, 401 |
| TspRI | CASTG | 2 cut(s) | 112, 311 |
| XceI | RCATGY | 1 cut(s) | 364 |
| XspI | CTAG | 2 cut(s) | 195, 296 |