transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 335 |
| AbsI | CCTCGAGG | 1 cut(s) | 239 |
| Acc16I | TGCGCA | 1 cut(s) | 475 |
| AccB1I | GGYRCC | 1 cut(s) | 323 |
| AccII | CGCG | 1 cut(s) | 366 |
| AciI | CCGC | 4 cut(s) | 364, 371, 588, 603 |
| AclWI | GGATC | 3 cut(s) | 99, 140, 552 |
| AcuI | CTGAAG | 2 cut(s) | 183, 845 |
| AcyI | GRCGYC | 2 cut(s) | 332, 506 |
| AfaI | GTAC | 2 cut(s) | 701, 857 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 88, 523, 709, 850 |
| AflIII | ACRYGT | 1 cut(s) | 671 |
| AgsI | TTSAA | 2 cut(s) | 161, 868 |
| AluBI | AGCT | 5 cut(s) | 73, 87, 609, 649, 784 |
| AluI | AGCT | 5 cut(s) | 73, 87, 609, 649, 784 |
| Alw21I | GWGCWC | 2 cut(s) | 75, 89 |
| Alw26I | GTCTC | 1 cut(s) | 633 |
| AlwI | GGATC | 3 cut(s) | 99, 140, 552 |
| Ama87I | CYCGRG | 2 cut(s) | 239, 401 |
| AoxI | GGCC | 2 cut(s) | 10, 408 |
| ApeKI | GCWGC | 6 cut(s) | 373, 439, 476, 540, 613, 646 |
| AspLEI | GCGC | 5 cut(s) | 426, 476, 540, 545, 567 |
| AspS9I | GGNCC | 2 cut(s) | 188, 203 |
| AsuHPI | GGTGA | 2 cut(s) | 190, 808 |
| AsuII | TTCGAA | 1 cut(s) | 54 |
| AsuNHI | GCTAGC | 1 cut(s) | 605 |
| AvaI | CYCGRG | 2 cut(s) | 239, 401 |
| AvaII | GGWCC | 2 cut(s) | 188, 203 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 683, 716 |
| BanI | GGYRCC | 1 cut(s) | 323 |
| BanII | GRGCYC | 3 cut(s) | 65, 75, 89 |
| BbsI | GAAGAC | 3 cut(s) | 43, 694, 875 |
| Bbv12I | GWGCWC | 2 cut(s) | 75, 89 |
| BbvI | GCAGC | 6 cut(s) | 360, 451, 488, 552, 600, 658 |
| BccI | CCATC | 3 cut(s) | 61, 645, 711 |
| BceAI | ACGGC | 1 cut(s) | 54 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 431, 465 |
| BcoDI | GTCTC | 1 cut(s) | 633 |
| BfaI | CTAG | 4 cut(s) | 356, 387, 483, 606 |
| BfmI | CTRYAG | 3 cut(s) | 14, 310, 644 |
| BfoI | RGCGCY | 2 cut(s) | 427, 568 |
| BisI | GCNGC | 6 cut(s) | 374, 440, 477, 541, 614, 647 |
| BlsI | GCNGC | 6 cut(s) | 375, 441, 478, 542, 615, 648 |
| Bme18I | GGWCC | 2 cut(s) | 188, 203 |
| BmeT110I | CYCGRG | 2 cut(s) | 239, 401 |
| BmgT120I | GGNCC | 2 cut(s) | 188, 203 |
| BmiI | GGNNCC | 4 cut(s) | 189, 205, 235, 325 |
| BmrI | ACTGGG | 2 cut(s) | 201, 859 |
| BmsI | GCATC | 2 cut(s) | 451, 881 |
| BmtI | GCTAGC | 1 cut(s) | 609 |
| BmuI | ACTGGG | 2 cut(s) | 201, 859 |
| BpiI | GAAGAC | 3 cut(s) | 43, 694, 875 |
| Bpu14I | TTCGAA | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 1 cut(s) | 716 |
| BsaHI | GRCGYC | 2 cut(s) | 332, 506 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 575, 605 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 88, 523, 709, 850 |
| Bse118I | RCCGGY | 1 cut(s) | 420 |
| Bse1I | ACTGG | 3 cut(s) | 207, 517, 854 |
| BseGI | GGATG | 4 cut(s) | 232, 345, 442, 896 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 88, 523, 709, 850 |
| BseMII | CTCAG | 1 cut(s) | 812 |
| BseNI | ACTGG | 3 cut(s) | 207, 517, 854 |
| BseRI | GAGGAG | 1 cut(s) | 257 |
| BseXI | GCAGC | 6 cut(s) | 360, 451, 488, 552, 600, 658 |
| BseYI | CCCAGC | 3 cut(s) | 145, 534, 561 |
| Bsh1236I | CGCG | 1 cut(s) | 366 |
| BshFI | GGCC | 2 cut(s) | 12, 410 |
| BshNI | GGYRCC | 1 cut(s) | 323 |
| BsiHKAI | GWGCWC | 2 cut(s) | 75, 89 |
| BsiHKCI | CYCGRG | 2 cut(s) | 239, 401 |
| BsiSI | CCGG | 2 cut(s) | 191, 421 |
| BslFI | GGGAC | 3 cut(s) | 17, 279, 353 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 88, 523, 709, 850 |
| BsmAI | GTCTC | 1 cut(s) | 633 |
| BsmBI | CGTCTC | 1 cut(s) | 633 |
| BsmFI | GGGAC | 3 cut(s) | 17, 279, 353 |
| BsmI | GAATGC | 1 cut(s) | 490 |
| BsnI | GGCC | 2 cut(s) | 12, 410 |
| BsoBI | CYCGRG | 2 cut(s) | 239, 401 |
| Bsp119I | TTCGAA | 1 cut(s) | 54 |
| Bsp1286I | GDGCHC | 3 cut(s) | 65, 75, 89 |
| Bsp143I | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| BspACI | CCGC | 4 cut(s) | 364, 371, 588, 603 |
| BspANI | GGCC | 2 cut(s) | 12, 410 |
| BspCNI | CTCAG | 1 cut(s) | 813 |
| BspFNI | CGCG | 1 cut(s) | 366 |
| BspLI | GGNNCC | 4 cut(s) | 189, 205, 235, 325 |
| BspMAI | CTGCAG | 1 cut(s) | 648 |
| BspOI | GCTAGC | 1 cut(s) | 609 |
| BspPI | GGATC | 3 cut(s) | 99, 140, 552 |
| BspT104I | TTCGAA | 1 cut(s) | 54 |
| BspT107I | GGYRCC | 1 cut(s) | 323 |
| BsrFI | RCCGGY | 1 cut(s) | 420 |
| BsrI | ACTGG | 3 cut(s) | 207, 517, 854 |
| BssAI | RCCGGY | 1 cut(s) | 420 |
| BssMI | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| BssNI | GRCGYC | 2 cut(s) | 332, 506 |
| Bst4CI | ACNGT | 4 cut(s) | 311, 435, 549, 886 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstACI | GRCGYC | 2 cut(s) | 332, 506 |
| BstBI | TTCGAA | 1 cut(s) | 54 |
| BstC8I | GCNNGC | 5 cut(s) | 418, 422, 607, 611, 624 |
| BstDEI | CTNAG | 2 cut(s) | 821, 839 |
| BstF5I | GGATG | 4 cut(s) | 232, 345, 442, 896 |
| BstFNI | CGCG | 1 cut(s) | 366 |
| BstH2I | RGCGCY | 2 cut(s) | 427, 568 |
| BstHHI | GCGC | 5 cut(s) | 426, 476, 540, 545, 567 |
| BstKTI | GATC | 5 cut(s) | 94, 135, 451, 560, 838 |
| BstMAI | GTCTC | 1 cut(s) | 633 |
| BstMBI | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 587, 619 |
| BstNSI | RCATGY | 1 cut(s) | 675 |
| BstSFI | CTRYAG | 3 cut(s) | 14, 310, 644 |
| BstUI | CGCG | 1 cut(s) | 366 |
| BstV1I | GCAGC | 6 cut(s) | 360, 451, 488, 552, 600, 658 |
| BstV2I | GAAGAC | 3 cut(s) | 43, 694, 875 |
| BstX2I | RGATCY | 2 cut(s) | 91, 557 |
| BstYI | RGATCY | 2 cut(s) | 91, 557 |
| BsuRI | GGCC | 2 cut(s) | 12, 410 |
| BtgZI | GCGATG | 1 cut(s) | 736 |
| BtsCI | GGATG | 4 cut(s) | 232, 345, 442, 896 |
| BtsI | GCAGTG | 1 cut(s) | 411 |
| BtsIMutI | CAGTG | 3 cut(s) | 214, 411, 847 |
| Cac8I | GCNNGC | 5 cut(s) | 418, 422, 607, 611, 624 |
| CfoI | GCGC | 5 cut(s) | 426, 476, 540, 545, 567 |
| Cfr10I | RCCGGY | 1 cut(s) | 420 |
| Cfr13I | GGNCC | 2 cut(s) | 188, 203 |
| CseI | GACGC | 4 cut(s) | 19, 355, 495, 615 |
| Csp6I | GTAC | 2 cut(s) | 700, 856 |
| CviAII | CATG | 3 cut(s) | 184, 248, 672 |
| CviQI | GTAC | 2 cut(s) | 700, 856 |
| DdeI | CTNAG | 2 cut(s) | 821, 839 |
| DpnI | GATC | 5 cut(s) | 93, 134, 450, 559, 837 |
| DpnII | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Ecl136II | GAGCTC | 2 cut(s) | 73, 87 |
| Eco24I | GRGCYC | 3 cut(s) | 65, 75, 89 |
| Eco47I | GGWCC | 2 cut(s) | 188, 203 |
| Eco53kI | GAGCTC | 2 cut(s) | 73, 87 |
| Eco57I | CTGAAG | 2 cut(s) | 183, 845 |
| Eco88I | CYCGRG | 2 cut(s) | 239, 401 |
| EcoICRI | GAGCTC | 2 cut(s) | 73, 87 |
| EcoO109I | RGGNCCY | 1 cut(s) | 203 |
| EcoT38I | GRGCYC | 3 cut(s) | 65, 75, 89 |
| Esp3I | CGTCTC | 1 cut(s) | 633 |
| FaeI | CATG | 3 cut(s) | 187, 251, 675 |
| FaiI | YATR | 7 cut(s) | 23, 77, 185, 249, 668, 673, 831 |
| FaqI | GGGAC | 3 cut(s) | 17, 279, 353 |
| FatI | CATG | 3 cut(s) | 183, 247, 671 |
| FauI | CCCGC | 3 cut(s) | 378, 595, 610 |
| Fnu4HI | GCNGC | 6 cut(s) | 374, 440, 477, 541, 614, 647 |
| FokI | GGATG | 3 cut(s) | 239, 332, 429 |
| FriOI | GRGCYC | 3 cut(s) | 65, 75, 89 |
| Fsp4HI | GCNGC | 6 cut(s) | 374, 440, 477, 541, 614, 647 |
| FspBI | CTAG | 4 cut(s) | 356, 387, 483, 606 |
| FspI | TGCGCA | 1 cut(s) | 475 |
| GlaI | GCGC | 5 cut(s) | 425, 475, 539, 544, 566 |
| GluI | GCNGC | 6 cut(s) | 374, 440, 477, 541, 614, 647 |
| GsaI | CCCAGC | 3 cut(s) | 149, 538, 565 |
| HaeII | RGCGCY | 2 cut(s) | 427, 568 |
| HaeIII | GGCC | 2 cut(s) | 12, 410 |
| HapII | CCGG | 2 cut(s) | 191, 421 |
| HgaI | GACGC | 4 cut(s) | 19, 355, 495, 615 |
| HhaI | GCGC | 5 cut(s) | 426, 476, 540, 545, 567 |
| Hin1I | GRCGYC | 2 cut(s) | 332, 506 |
| Hin1II | CATG | 3 cut(s) | 187, 251, 675 |
| Hin6I | GCGC | 5 cut(s) | 424, 474, 538, 543, 565 |
| HinP1I | GCGC | 5 cut(s) | 424, 474, 538, 543, 565 |
| HincII | GTYRAC | 1 cut(s) | 461 |
| HindII | GTYRAC | 1 cut(s) | 461 |
| HinfI | GANTC | 2 cut(s) | 338, 454 |
| HpaII | CCGG | 2 cut(s) | 191, 421 |
| HphI | GGTGA | 2 cut(s) | 190, 808 |
| Hpy166II | GTNNAC | 3 cut(s) | 181, 286, 461 |
| Hpy188I | TCNGA | 7 cut(s) | 91, 96, 337, 453, 526, 718, 822 |
| Hpy188III | TCNNGA | 5 cut(s) | 82, 201, 356, 446, 498 |
| Hpy8I | GTNNAC | 3 cut(s) | 181, 286, 461 |
| Hpy99I | CGWCG | 2 cut(s) | 334, 439 |
| HpyAV | CCTTC | 5 cut(s) | 256, 352, 400, 579, 869 |
| HpyCH4III | ACNGT | 4 cut(s) | 311, 435, 549, 886 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 332 |
| HpyCH4V | TGCA | 2 cut(s) | 646, 654 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 587, 619 |
| HpyF3I | CTNAG | 2 cut(s) | 821, 839 |
| HpySE526I | ACGT | 2 cut(s) | 318, 332 |
| Hsp92I | GRCGYC | 2 cut(s) | 332, 506 |
| Hsp92II | CATG | 3 cut(s) | 187, 251, 675 |
| HspAI | GCGC | 5 cut(s) | 424, 474, 538, 543, 565 |
| KroI | GCCGGC | 1 cut(s) | 420 |
| KroNI | GCCGGC | 1 cut(s) | 422 |
| Kzo9I | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| LmnI | GCTCC | 2 cut(s) | 70, 244 |
| Lsp1109I | GCAGC | 6 cut(s) | 360, 451, 488, 552, 600, 658 |
| LweI | GCATC | 2 cut(s) | 451, 881 |
| MaeI | CTAG | 4 cut(s) | 356, 387, 483, 606 |
| MaeII | ACGT | 2 cut(s) | 318, 332 |
| MaeIII | GTNAC | 2 cut(s) | 305, 549 |
| MalI | GATC | 5 cut(s) | 93, 134, 450, 559, 837 |
| MboI | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| MboII | GAAGA | 7 cut(s) | 43, 233, 486, 689, 696, 699, 880 |
| MfeI | CAATTG | 1 cut(s) | 156 |
| MflI | RGATCY | 2 cut(s) | 91, 557 |
| MhlI | GDGCHC | 3 cut(s) | 65, 75, 89 |
| MluCI | AATT | 2 cut(s) | 56, 156 |
| MmeI | TCCRAC | 1 cut(s) | 618 |
| MnlI | CCTC | 7 cut(s) | 217, 223, 235, 248, 391, 601, 816 |
| MreI | CGCCGGCG | 1 cut(s) | 420 |
| MroNI | GCCGGC | 1 cut(s) | 420 |
| MseI | TTAA | 5 cut(s) | 168, 215, 293, 812, 898 |
| MspA1I | CMGCKG | 1 cut(s) | 373 |
| MspI | CCGG | 2 cut(s) | 191, 421 |
| MteI | GCGCNGCGC | 1 cut(s) | 541 |
| MunI | CAATTG | 1 cut(s) | 156 |
| Mva1269I | GAATGC | 1 cut(s) | 490 |
| MvnI | CGCG | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 587, 619 |
| NaeI | GCCGGC | 1 cut(s) | 422 |
| NdeII | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| NgoMIV | GCCGGC | 1 cut(s) | 420 |
| NheI | GCTAGC | 1 cut(s) | 605 |
| NlaIII | CATG | 3 cut(s) | 187, 251, 675 |
| NlaIV | GGNNCC | 4 cut(s) | 189, 205, 235, 325 |
| NsbI | TGCGCA | 1 cut(s) | 475 |
| NspI | RCATGY | 1 cut(s) | 675 |
| NspV | TTCGAA | 1 cut(s) | 54 |
| PaeR7I | CTCGAG | 1 cut(s) | 239 |
| PciI | ACATGT | 1 cut(s) | 671 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 274, 399 |
| PctI | GAATGC | 1 cut(s) | 490 |
| PdiI | GCCGGC | 1 cut(s) | 422 |
| PfeI | GAWTC | 2 cut(s) | 338, 454 |
| PflFI | GACNNNGTC | 1 cut(s) | 270 |
| PkrI | GCNGC | 6 cut(s) | 375, 441, 478, 542, 615, 648 |
| PpuMI | RGGWCCY | 1 cut(s) | 203 |
| PscI | ACATGT | 1 cut(s) | 671 |
| Psp124BI | GAGCTC | 2 cut(s) | 75, 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 203 |
| PspFI | CCCAGC | 3 cut(s) | 145, 534, 561 |
| PspN4I | GGNNCC | 4 cut(s) | 189, 205, 235, 325 |
| PspPI | GGNCC | 2 cut(s) | 188, 203 |
| PspPPI | RGGWCCY | 1 cut(s) | 203 |
| PspXI | VCTCGAGB | 1 cut(s) | 239 |
| PstI | CTGCAG | 1 cut(s) | 648 |
| PsuI | RGATCY | 2 cut(s) | 91, 557 |
| PsyI | GACNNNGTC | 1 cut(s) | 270 |
| RsaI | GTAC | 2 cut(s) | 701, 857 |
| RsaNI | GTAC | 2 cut(s) | 700, 856 |
| SacI | GAGCTC | 2 cut(s) | 75, 89 |
| SaqAI | TTAA | 5 cut(s) | 168, 215, 293, 812, 898 |
| SatI | GCNGC | 6 cut(s) | 374, 440, 477, 541, 614, 647 |
| Sau3AI | GATC | 5 cut(s) | 91, 132, 448, 557, 835 |
| Sau96I | GGNCC | 2 cut(s) | 188, 203 |
| SduI | GDGCHC | 3 cut(s) | 65, 75, 89 |
| SfaNI | GCATC | 2 cut(s) | 451, 881 |
| SfcI | CTRYAG | 3 cut(s) | 14, 310, 644 |
| Sfr274I | CTCGAG | 1 cut(s) | 239 |
| SfuI | TTCGAA | 1 cut(s) | 54 |
| SgrAI | CRCCGGYG | 1 cut(s) | 420 |
| SinI | GGWCC | 2 cut(s) | 188, 203 |
| SlaI | CTCGAG | 1 cut(s) | 239 |
| SmlI | CTYRAG | 2 cut(s) | 239, 695 |
| SmoI | CTYRAG | 2 cut(s) | 239, 695 |
| Sse9I | AATT | 2 cut(s) | 56, 156 |
| SsiI | CCGC | 4 cut(s) | 364, 371, 588, 603 |
| SspMI | CTAG | 4 cut(s) | 356, 387, 483, 606 |
| SstI | GAGCTC | 2 cut(s) | 75, 89 |
| TaaI | ACNGT | 4 cut(s) | 311, 435, 549, 886 |
| TaiI | ACGT | 2 cut(s) | 321, 335 |
| TaqI | TCGA | 3 cut(s) | 54, 65, 240 |
| TasI | AATT | 2 cut(s) | 56, 156 |
| TfiI | GAWTC | 2 cut(s) | 338, 454 |
| Tru1I | TTAA | 5 cut(s) | 168, 215, 293, 812, 898 |
| Tru9I | TTAA | 5 cut(s) | 168, 215, 293, 812, 898 |
| TscAI | CASTG | 3 cut(s) | 214, 418, 854 |
| TseI | GCWGC | 6 cut(s) | 373, 439, 476, 540, 613, 646 |
| TspDTI | ATGAA | 3 cut(s) | 113, 269, 334 |
| TspRI | CASTG | 3 cut(s) | 214, 418, 854 |
| Tth111I | GACNNNGTC | 1 cut(s) | 270 |
| VpaK11BI | GGWCC | 2 cut(s) | 188, 203 |
| XbaI | TCTAGA | 1 cut(s) | 355 |
| XceI | RCATGY | 1 cut(s) | 675 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 214, 883 |
| XhoI | CTCGAG | 1 cut(s) | 239 |
| XspI | CTAG | 4 cut(s) | 356, 387, 483, 606 |
| ZraI | GACGTC | 1 cut(s) | 333 |